Wall clock time and date at job start Tue Mar 31 2020 21:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48503 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47349 * 299.99705 * 3 2 1 6 6 H 1.48502 * 109.47245 * 60.00347 * 3 2 1 7 7 C 1.38815 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99661 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99629 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46823 * 180.02562 * 10 9 7 12 12 H 1.08993 * 110.05459 * 53.58160 * 11 10 9 13 13 C 1.54265 * 110.02832 * 292.16859 * 11 10 9 14 14 C 1.54891 * 104.19461 * 217.10640 * 13 11 10 15 15 C 1.54894 * 102.74609 * 37.94246 * 14 13 11 16 16 C 1.53871 * 110.02808 * 175.00344 * 11 10 9 17 17 H 1.09005 * 110.07114 * 238.58589 * 16 11 10 18 18 N 1.46493 * 110.03743 * 359.97438 * 16 11 10 19 19 C 1.34771 * 120.00458 * 203.61859 * 18 16 11 20 20 O 1.21280 * 119.99808 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00425 * 179.97438 * 19 18 16 22 22 C 1.50696 * 109.47478 * 180.02562 * 21 19 18 23 23 C 1.38254 * 120.00336 * 264.98424 * 22 21 19 24 24 C 1.38220 * 120.07087 * 180.02562 * 23 22 21 25 25 C 1.38255 * 120.06932 * 359.97438 * 24 23 22 26 26 C 1.38364 * 120.00057 * 0.02562 * 25 24 23 27 27 F 1.35106 * 120.03588 * 180.02562 * 26 25 24 28 28 C 1.38370 * 119.99667 * 85.00543 * 22 21 19 29 29 F 1.35097 * 120.03596 * 359.97438 * 28 22 21 30 30 H 0.96999 * 119.99897 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00194 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46880 * 60.00084 * 10 9 7 33 33 H 1.08998 * 109.47044 * 300.00025 * 10 9 7 34 34 H 1.08994 * 110.48666 * 98.43076 * 13 11 10 35 35 H 1.08997 * 110.60470 * 335.83935 * 13 11 10 36 36 H 1.08996 * 110.75537 * 279.62925 * 14 13 11 37 37 H 1.09003 * 110.91552 * 156.32954 * 14 13 11 38 38 H 1.09007 * 110.48356 * 203.37758 * 15 14 13 39 39 H 1.08995 * 110.48562 * 80.74180 * 15 14 13 40 40 H 0.97010 * 119.99792 * 23.62227 * 18 16 11 41 41 H 1.09004 * 109.46642 * 60.00685 * 21 19 18 42 42 H 1.09003 * 109.47647 * 300.00890 * 21 19 18 43 43 H 1.08004 * 119.96662 * 0.02562 * 23 22 21 44 44 H 1.07997 * 119.95962 * 180.27529 * 24 23 22 45 45 H 1.08000 * 119.99314 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.3591 -4.7086 -0.8242 13 6 0.3042 -4.8662 1.3418 14 6 0.1413 -6.3786 1.6339 15 6 1.4871 -6.9682 1.1437 16 6 1.8159 -6.1562 -0.1260 17 1 1.4770 -6.6942 -1.0114 18 7 3.2584 -5.9144 -0.2082 19 6 4.0635 -6.8297 -0.7830 20 8 3.5936 -7.8533 -1.2328 21 6 5.5473 -6.5807 -0.8680 22 6 6.2141 -7.7472 -1.5505 23 6 6.7629 -8.7678 -0.7964 24 6 7.3753 -9.8381 -1.4209 25 6 7.4400 -9.8904 -2.8009 26 6 6.8918 -8.8706 -3.5584 27 9 6.9541 -8.9213 -4.9071 28 6 6.2776 -7.7964 -2.9318 29 9 5.7416 -6.7995 -3.6694 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6846 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 -0.6711 -4.3893 1.2449 35 1 0.8860 -4.3863 2.1287 36 1 -0.6918 -6.7940 1.0669 37 1 0.0073 -6.5566 2.7009 38 1 1.3751 -8.0253 0.9022 39 1 2.2620 -6.8282 1.8974 40 1 3.6342 -5.0955 0.1513 41 1 5.9545 -6.4659 0.1366 42 1 5.7311 -5.6716 -1.4407 43 1 6.7130 -8.7288 0.2818 44 1 7.7994 -10.6365 -0.8302 45 1 7.9192 -10.7271 -3.2876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320162065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:24 Heat of formation + Delta-G solvation = -96.384723 kcal Electronic energy + Delta-G solvation = -29046.461311 eV Core-core repulsion = 24699.710365 eV Total energy + Delta-G solvation = -4346.750945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.63519 -48.71381 -40.31338 -39.19683 -37.87990 -34.39966 -33.64311 -33.08994 -31.43918 -30.58811 -28.83963 -28.51560 -26.84389 -24.58981 -23.11700 -22.81000 -22.51311 -20.77277 -20.38610 -19.05009 -18.13927 -17.57946 -17.51509 -17.17818 -16.99700 -16.38835 -15.83296 -15.28322 -15.17148 -15.11962 -15.05982 -14.60000 -14.54005 -14.34503 -13.80517 -13.70905 -13.60502 -13.19079 -13.03682 -12.91625 -12.54354 -12.33291 -12.22047 -12.02037 -11.62515 -11.52468 -11.31533 -10.90543 -10.86108 -10.82435 -10.50917 -10.41809 -10.30114 -9.98547 -9.93445 -9.72390 -9.18759 -9.00391 -8.98288 -8.86446 -6.97225 -5.80826 -3.09862 0.64772 0.67216 2.62758 2.94025 3.35624 3.40396 3.45843 3.48220 3.52856 4.06555 4.15664 4.36231 4.51267 4.60673 4.67449 4.73932 4.80786 4.87495 5.01329 5.09802 5.14418 5.43928 5.45059 5.50849 5.51266 5.62052 5.64510 5.65050 5.74956 5.77391 5.84035 5.91114 5.91770 6.03286 6.15886 6.19583 6.28363 6.42346 6.45289 6.56177 6.58636 6.70338 6.79415 7.55480 7.64981 8.24119 8.37693 9.49287 10.06522 10.41061 11.41983 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.002723 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.786304 B =10279.204168 C =11819.319341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.157 3.843 11 C -0.108 4.108 12 H 0.082 0.918 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.149 3.851 17 H 0.088 0.912 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.539 6.539 21 C -0.109 4.109 22 C -0.068 4.068 23 C -0.089 4.089 24 C -0.101 4.101 25 C -0.129 4.129 26 C 0.066 3.934 27 F -0.130 7.130 28 C 0.084 3.916 29 F -0.123 7.123 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.018 0.982 33 H 0.021 0.979 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.408 0.592 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.416 -21.153 1.102 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.029 3.971 11 C -0.127 4.127 12 H 0.100 0.900 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.044 3.956 17 H 0.106 0.894 18 N -0.372 5.372 19 C 0.301 3.699 20 O -0.416 6.416 21 C -0.149 4.149 22 C -0.069 4.069 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.147 4.147 26 C 0.046 3.954 27 F -0.108 7.108 28 C 0.063 3.937 29 F -0.102 7.102 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.247 0.753 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.192 -21.704 0.685 25.408 hybrid contribution 0.188 1.601 -0.324 1.644 sum 13.380 -20.103 0.360 24.151 Atomic orbital electron populations 1.69667 1.05127 1.25600 1.57602 1.24745 0.95520 0.97725 1.02904 0.86129 0.78767 0.84130 0.77211 1.20549 1.21852 1.21854 1.19248 0.91007 0.84147 1.42854 0.91172 1.42328 1.05905 0.99717 1.89320 1.20686 0.93408 0.85695 0.97289 1.22215 0.97995 0.93471 0.99032 0.89975 1.22349 1.00806 0.95060 0.96659 1.22492 0.96813 0.96334 1.00644 1.22750 0.97795 0.99327 0.97023 1.21649 0.79126 0.96061 0.98744 0.89434 1.46383 1.07985 1.22609 1.60263 1.20299 0.88175 0.83706 0.77721 1.90706 1.76694 1.26924 1.47316 1.20669 0.92889 0.97849 1.03466 1.19265 0.99417 0.97625 0.90624 1.20995 0.96699 0.92485 1.00542 1.21025 0.98930 0.98470 0.93453 1.21075 1.01084 0.98115 0.94472 1.17652 1.03594 0.96429 0.77712 1.91532 1.94656 1.96375 1.28269 1.17503 0.99693 0.87140 0.89323 1.91546 1.83713 1.58370 1.76551 0.93515 0.78140 0.96482 0.96120 0.91208 0.90995 0.91603 0.91645 0.91565 0.91368 0.75344 0.86800 0.87061 0.84278 0.84179 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.70 5.45 -59.90 -0.33 -18.03 16 10 C 0.16 2.92 4.18 -4.03 -0.02 2.91 16 11 C -0.11 -1.68 2.96 -89.50 -0.27 -1.94 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.11 -1.62 6.08 -25.07 -0.15 -1.77 16 14 C -0.12 -1.48 6.91 -24.73 -0.17 -1.66 16 15 C -0.13 -1.58 6.53 -25.07 -0.16 -1.75 16 16 C 0.15 2.06 3.20 -66.82 -0.21 1.84 16 17 H 0.09 1.33 7.61 -51.93 -0.39 0.93 16 18 N -0.72 -9.21 4.43 -52.73 -0.23 -9.44 16 19 C 0.52 6.78 7.81 -10.99 -0.09 6.69 16 20 O -0.54 -8.92 15.71 5.56 0.09 -8.84 16 21 C -0.11 -1.06 5.60 -29.04 -0.16 -1.23 16 22 C -0.07 -0.71 4.38 -104.57 -0.46 -1.17 16 23 C -0.09 -0.71 9.68 -39.58 -0.38 -1.10 16 24 C -0.10 -0.69 10.04 -39.58 -0.40 -1.09 16 25 C -0.13 -1.05 10.02 -39.53 -0.40 -1.45 16 26 C 0.07 0.75 7.31 -39.37 -0.29 0.46 16 27 F -0.13 -1.61 17.18 2.25 0.04 -1.58 16 28 C 0.08 1.04 7.25 -39.36 -0.29 0.76 16 29 F -0.12 -1.79 16.48 2.25 0.04 -1.75 16 30 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.38 9.93 7.55 -40.82 -0.31 9.63 16 32 H 0.02 0.31 7.12 -51.93 -0.37 -0.06 16 33 H 0.02 0.40 7.40 -51.93 -0.38 0.01 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.12 7.77 -51.93 -0.40 0.72 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 40 H 0.41 4.88 5.84 -40.82 -0.24 4.64 16 41 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 42 H 0.11 1.04 7.79 -51.93 -0.40 0.64 16 43 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -33.23 378.83 -8.94 -42.17 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.27 Total: 9.44 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.69 Total: -7.66 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.16 Total: -54.52 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.23 -8.94 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320162065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.215 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds