Wall clock time and date at job start Tue Mar 31 2020 21:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00181 * 2 1 4 4 H 1.48498 * 109.47211 * 240.00344 * 3 2 1 5 5 H 1.48493 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46885 * 120.00577 * 3 2 1 7 7 C 1.38815 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00147 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99569 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46643 * 184.93211 * 10 9 7 12 12 H 1.09002 * 110.00022 * 54.22041 * 11 10 9 13 13 C 1.54330 * 109.99221 * 293.17838 * 11 10 9 14 14 C 1.55154 * 103.02371 * 218.66488 * 13 11 10 15 15 C 1.54918 * 101.57812 * 35.30804 * 14 13 11 16 16 N 1.47026 * 109.88105 * 175.31361 * 11 10 9 17 17 C 1.34783 * 125.64372 * 298.39446 * 16 11 10 18 18 O 1.21280 * 120.00282 * 354.65453 * 17 16 11 19 19 C 1.50701 * 119.99637 * 174.65432 * 17 16 11 20 20 C 1.52995 * 109.47292 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47292 * 180.02562 * 20 19 17 22 22 C 1.38229 * 119.98860 * 99.99916 * 21 20 19 23 23 C 1.38181 * 120.05275 * 180.27352 * 22 21 20 24 24 C 1.38498 * 120.02295 * 359.49754 * 23 22 21 25 25 F 1.35098 * 120.01269 * 180.25603 * 24 23 22 26 26 C 1.38405 * 119.97385 * 0.50095 * 24 23 22 27 27 C 1.38435 * 119.94745 * 359.74752 * 26 24 23 28 28 F 1.35106 * 120.01197 * 179.97438 * 27 26 24 29 29 H 0.97002 * 119.99503 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00063 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47321 * 64.93656 * 10 9 7 32 32 H 1.08999 * 109.46991 * 304.92721 * 10 9 7 33 33 H 1.09001 * 110.84751 * 100.19870 * 13 11 10 34 34 H 1.09003 * 110.66673 * 337.04788 * 13 11 10 35 35 H 1.08999 * 111.00575 * 277.23830 * 14 13 11 36 36 H 1.08998 * 111.00916 * 153.37787 * 14 13 11 37 37 H 1.08996 * 110.36620 * 204.15042 * 15 14 13 38 38 H 1.09004 * 110.36696 * 81.83405 * 15 14 13 39 39 H 1.09000 * 109.47605 * 59.99742 * 19 17 16 40 40 H 1.09003 * 109.47032 * 299.99900 * 19 17 16 41 41 H 1.09000 * 109.47044 * 59.99352 * 20 19 17 42 42 H 1.09003 * 109.46963 * 299.99896 * 20 19 17 43 43 H 1.08007 * 119.97594 * 0.02562 * 22 21 20 44 44 H 1.08003 * 119.98955 * 179.74030 * 23 22 21 45 45 H 1.07998 * 120.02154 * 179.77567 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0683 -4.8170 -0.1246 12 1 0.4345 -4.6745 -0.9998 13 6 0.1945 -4.9032 1.1446 14 6 0.0585 -6.4318 1.3724 15 6 1.4480 -6.9396 0.9126 16 7 1.7992 -6.0877 -0.2382 17 6 2.6533 -6.4168 -1.2275 18 8 2.7990 -5.6739 -2.1750 19 6 3.4272 -7.7079 -1.1563 20 6 4.3174 -7.8379 -2.3938 21 6 5.0909 -9.1293 -2.3229 22 6 4.6642 -10.2305 -3.0413 23 6 5.3692 -11.4170 -2.9728 24 6 6.5103 -11.5010 -2.1923 25 9 7.2023 -12.6596 -2.1296 26 6 6.9384 -10.3990 -1.4726 27 6 6.2284 -9.2125 -1.5380 28 9 6.6449 -8.1361 -0.8356 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6167 -3.7538 0.9303 32 1 2.7493 -3.6772 -0.8431 33 1 -0.7822 -4.4502 0.9745 34 1 0.6955 -4.4304 1.9894 35 1 -0.7349 -6.8501 0.7530 36 1 -0.1106 -6.6565 2.4255 37 1 1.3881 -7.9841 0.6070 38 1 2.1796 -6.8186 1.7115 39 1 2.7321 -8.5467 -1.1186 40 1 4.0483 -7.7103 -0.2606 41 1 5.0125 -6.9991 -2.4310 42 1 3.6967 -7.8353 -3.2898 43 1 3.7768 -10.1648 -3.6534 44 1 5.0326 -12.2780 -3.5312 45 1 7.8260 -10.4648 -0.8609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324252468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:49 Heat of formation + Delta-G solvation = -94.126436 kcal Electronic energy + Delta-G solvation = -28567.741203 eV Core-core repulsion = 24221.088185 eV Total energy + Delta-G solvation = -4346.653019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.41274 -49.31863 -40.15607 -39.35314 -37.47637 -34.52577 -34.13929 -31.77778 -31.29740 -31.26846 -29.68952 -28.59044 -25.34135 -24.88357 -23.63549 -23.00064 -22.06178 -21.71747 -20.42313 -18.80544 -18.59368 -17.65579 -17.37477 -16.81701 -16.47888 -16.31973 -16.17104 -15.67669 -15.58663 -15.28234 -14.75969 -14.68424 -14.42936 -14.28161 -13.75131 -13.55443 -13.33965 -13.16980 -13.01460 -12.83778 -12.66809 -12.54190 -12.26570 -12.05334 -11.95966 -11.70489 -11.52047 -11.24385 -11.13228 -10.88880 -10.79257 -10.53460 -10.39185 -10.03602 -9.76497 -9.60435 -9.50715 -8.99710 -8.80678 -8.42531 -6.86647 -5.71352 -2.99432 0.49063 0.55665 2.77218 2.86456 3.11082 3.44676 3.48818 3.52441 3.54366 3.98633 4.12435 4.17786 4.38521 4.58721 4.62258 4.65408 4.66890 4.82265 4.87807 5.00620 5.07127 5.27340 5.32707 5.36751 5.39912 5.48867 5.49871 5.52005 5.58940 5.62379 5.63419 5.80828 5.90294 5.92696 5.95479 6.07123 6.09653 6.19004 6.32977 6.43400 6.56369 6.85758 6.99764 7.69531 7.76286 8.33258 8.47929 9.58635 10.15124 10.50898 11.51673 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.002234 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.998689 B =12528.792701 C =13475.936867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.130 3.870 12 H 0.076 0.924 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.100 3.900 16 N -0.613 5.613 17 C 0.525 3.475 18 O -0.529 6.529 19 C -0.130 4.130 20 C -0.066 4.066 21 C -0.122 4.122 22 C -0.058 4.058 23 C -0.162 4.162 24 C 0.123 3.877 25 F -0.133 7.133 26 C -0.191 4.191 27 C 0.134 3.866 28 F -0.125 7.125 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.014 0.986 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -28.359 -1.093 29.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.019 3.981 11 C 0.027 3.973 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.023 4.023 16 N -0.348 5.348 17 C 0.313 3.687 18 O -0.405 6.405 19 C -0.170 4.170 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.076 4.076 23 C -0.181 4.181 24 C 0.103 3.897 25 F -0.112 7.112 26 C -0.210 4.210 27 C 0.114 3.886 28 F -0.103 7.103 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.163 0.837 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.548 -27.853 -1.646 28.905 hybrid contribution 0.467 0.840 0.295 1.005 sum 8.015 -27.013 -1.351 28.210 Atomic orbital electron populations 1.69650 1.05054 1.25675 1.58058 1.24723 0.95558 0.97618 1.03176 0.86244 0.78496 0.83471 0.77864 1.21265 1.21694 1.21319 1.19175 0.90995 0.84034 1.42346 0.91330 1.42194 1.05737 0.99709 1.89599 1.20927 0.93652 0.85221 0.98298 1.21822 0.93514 0.83487 0.98477 0.90545 1.22677 1.00685 0.95004 0.97649 1.22794 0.96006 0.96676 1.01729 1.22319 0.96903 0.94407 0.88709 1.48567 1.44624 1.17744 1.23902 1.20163 0.79174 0.87852 0.81483 1.90762 1.64849 1.52749 1.32106 1.21619 0.98960 0.96243 1.00189 1.20309 0.98057 0.93377 0.98632 1.20110 0.95707 0.97917 0.98575 1.20872 0.99192 0.90412 0.97106 1.21225 0.95349 1.00072 1.01411 1.17312 0.92085 0.81796 0.98484 1.91534 1.78339 1.46294 1.95008 1.21049 1.03541 0.91917 1.04535 1.17200 0.94133 0.83540 0.93697 1.91568 1.89556 1.52985 1.76199 0.93535 0.78321 0.96792 0.94680 0.89790 0.89947 0.90819 0.89995 0.90954 0.91350 0.88922 0.88881 0.89258 0.89166 0.83658 0.83953 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.78 13.06 55.49 0.72 -28.06 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.25 5.46 -59.91 -0.33 -19.58 16 10 C 0.15 3.26 5.66 -4.04 -0.02 3.23 16 11 C 0.13 2.27 2.92 -66.94 -0.20 2.07 16 12 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 13 C -0.12 -1.76 6.08 -24.89 -0.15 -1.91 16 14 C -0.13 -1.35 7.09 -24.58 -0.17 -1.53 16 15 C 0.10 1.01 6.65 -2.53 -0.02 0.99 16 16 N -0.61 -8.79 3.06 -163.00 -0.50 -9.29 16 17 C 0.53 7.81 7.57 -10.98 -0.08 7.73 16 18 O -0.53 -10.25 15.17 5.56 0.08 -10.16 16 19 C -0.13 -1.30 4.77 -27.89 -0.13 -1.43 16 20 C -0.07 -0.66 4.36 -27.89 -0.12 -0.78 16 21 C -0.12 -1.01 5.14 -104.55 -0.54 -1.55 16 22 C -0.06 -0.37 9.66 -39.61 -0.38 -0.75 16 23 C -0.16 -1.01 10.02 -39.51 -0.40 -1.40 16 24 C 0.12 0.94 7.30 -39.42 -0.29 0.65 16 25 F -0.13 -1.11 17.27 2.25 0.04 -1.07 16 26 C -0.19 -1.51 10.01 -39.45 -0.39 -1.91 16 27 C 0.13 1.21 7.24 -39.43 -0.29 0.93 16 28 F -0.12 -1.34 16.66 2.25 0.04 -1.30 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.38 7.44 -40.82 -0.30 10.08 16 31 H 0.01 0.32 8.04 -51.93 -0.42 -0.10 16 32 H 0.04 0.87 6.90 -51.93 -0.36 0.51 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.28 7.78 -51.93 -0.40 0.88 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.54 7.51 -51.93 -0.39 0.15 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.69 7.77 -51.93 -0.40 0.29 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 42 H 0.09 0.87 7.96 -51.93 -0.41 0.46 16 43 H 0.15 0.62 8.04 -52.48 -0.42 0.20 16 44 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -34.57 381.95 -9.09 -43.66 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.45 Total: 5.15 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.43 Total: -3.22 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.10 Total: -56.93 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.57 -9.09 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324252468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.467 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds