Wall clock time and date at job start Tue Mar 31 2020 21:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99823 * 2 1 4 4 H 1.48498 * 109.47409 * 240.00056 * 3 2 1 5 5 H 1.48500 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47025 * 120.00028 * 3 2 1 7 7 C 1.38810 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00480 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99635 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99812 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47040 * 185.07464 * 10 9 7 12 12 H 1.08993 * 109.87792 * 303.77559 * 11 10 9 13 13 C 1.54331 * 109.87893 * 64.79327 * 11 10 9 14 14 C 1.55159 * 102.94101 * 141.76556 * 13 11 10 15 15 C 1.54909 * 101.58165 * 324.49339 * 14 13 11 16 16 N 1.47024 * 110.01189 * 182.67508 * 11 10 9 17 17 C 1.34772 * 125.64851 * 61.60637 * 16 11 10 18 18 O 1.21284 * 119.99997 * 5.06097 * 17 16 11 19 19 C 1.50700 * 120.00055 * 185.05926 * 17 16 11 20 20 C 1.52999 * 109.47060 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47060 * 179.97438 * 20 19 17 22 22 C 1.38227 * 119.98585 * 264.71544 * 21 20 19 23 23 C 1.38195 * 120.04569 * 179.76744 * 22 21 20 24 24 C 1.38494 * 120.02646 * 0.51329 * 23 22 21 25 25 F 1.35105 * 120.00960 * 179.76925 * 24 23 22 26 26 C 1.38392 * 119.97466 * 359.74138 * 24 23 22 27 27 C 1.38437 * 119.95085 * 0.02562 * 26 24 23 28 28 F 1.35106 * 120.01388 * 180.02562 * 27 26 24 29 29 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99691 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46813 * 65.08174 * 10 9 7 32 32 H 1.08997 * 109.47615 * 305.07801 * 10 9 7 33 33 H 1.09004 * 110.71912 * 260.12471 * 13 11 10 34 34 H 1.08997 * 110.71934 * 23.40083 * 13 11 10 35 35 H 1.08993 * 111.00952 * 82.57072 * 14 13 11 36 36 H 1.09001 * 110.99872 * 206.42102 * 14 13 11 37 37 H 1.09002 * 110.36947 * 278.17318 * 15 14 13 38 38 H 1.08998 * 110.45867 * 155.89702 * 15 14 13 39 39 H 1.09006 * 109.47176 * 299.99691 * 19 17 16 40 40 H 1.08995 * 109.47105 * 60.00228 * 19 17 16 41 41 H 1.09010 * 109.46862 * 299.99580 * 20 19 17 42 42 H 1.08995 * 109.47482 * 59.99839 * 20 19 17 43 43 H 1.08000 * 119.97698 * 0.03041 * 22 21 20 44 44 H 1.08005 * 119.98347 * 180.26227 * 23 22 21 45 45 H 1.08000 * 120.02437 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0688 -4.8167 -0.1290 12 1 0.3321 -4.7651 0.6725 13 6 0.3599 -4.7539 -1.4984 14 6 0.2537 -6.2479 -1.9036 15 6 1.5775 -6.8187 -1.3367 16 7 1.7859 -6.0987 -0.0672 17 6 2.5129 -6.5425 0.9773 18 8 2.5412 -5.9072 2.0100 19 6 3.2905 -7.8283 0.8621 20 6 4.0218 -8.1016 2.1779 21 6 4.7989 -9.3877 2.0628 22 6 4.2457 -10.5717 2.5130 23 6 4.9553 -11.7526 2.4038 24 6 6.2259 -11.7491 1.8528 25 9 6.9211 -12.9030 1.7504 26 6 6.7828 -10.5634 1.4066 27 6 6.0692 -9.3818 1.5121 28 9 6.6115 -8.2236 1.0764 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 2.6156 -3.7552 0.9299 32 1 2.7507 -3.6757 -0.8432 33 1 -0.6307 -4.3097 -1.3999 34 1 0.9618 -4.2007 -2.2193 35 1 -0.6086 -6.7201 -1.4330 36 1 0.2136 -6.3568 -2.9874 37 1 2.4005 -6.6222 -2.0239 38 1 1.4837 -7.8893 -1.1547 39 1 2.6056 -8.6494 0.6501 40 1 4.0164 -7.7426 0.0535 41 1 4.7067 -7.2806 2.3902 42 1 3.2957 -8.1874 2.9862 43 1 3.2565 -10.5747 2.9465 44 1 4.5203 -12.6778 2.7519 45 1 7.7734 -10.5598 0.9764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324252474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:53 Heat of formation + Delta-G solvation = -94.157941 kcal Electronic energy + Delta-G solvation = -28544.460630 eV Core-core repulsion = 24197.806245 eV Total energy + Delta-G solvation = -4346.654385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.41291 -49.31799 -40.15857 -39.35457 -37.47730 -34.52865 -34.14433 -31.77563 -31.29670 -31.26636 -29.69529 -28.58594 -25.34399 -24.89008 -23.63499 -23.00012 -22.05552 -21.71017 -20.41773 -18.81345 -18.59872 -17.66326 -17.39149 -16.79459 -16.47844 -16.31976 -16.17709 -15.67761 -15.58510 -15.26830 -14.76266 -14.70137 -14.43087 -14.28426 -13.74276 -13.53916 -13.34136 -13.16840 -13.01370 -12.87922 -12.72308 -12.54023 -12.22951 -12.06501 -11.95262 -11.69744 -11.44243 -11.24350 -11.12000 -10.89150 -10.80191 -10.52226 -10.42723 -10.05381 -9.77386 -9.61143 -9.50739 -8.99975 -8.80573 -8.43013 -6.86579 -5.71715 -2.99846 0.48856 0.55422 2.76700 2.86096 3.10777 3.44535 3.48180 3.52051 3.53748 3.98411 4.12365 4.17448 4.38455 4.59064 4.62780 4.65555 4.66541 4.81774 4.87567 5.00846 5.07641 5.26879 5.32832 5.36578 5.40838 5.48602 5.49785 5.51696 5.59437 5.62053 5.62827 5.81836 5.89487 5.92813 5.95399 6.07008 6.10582 6.21119 6.32808 6.44130 6.58108 6.84197 7.00971 7.69284 7.75375 8.32708 8.47438 9.58154 10.14856 10.50578 11.51263 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.002209 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.279014 B =12671.420676 C =13588.512662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.130 3.870 12 H 0.075 0.925 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.100 3.900 16 N -0.613 5.613 17 C 0.525 3.475 18 O -0.529 6.529 19 C -0.129 4.129 20 C -0.067 4.067 21 C -0.122 4.122 22 C -0.058 4.058 23 C -0.162 4.162 24 C 0.123 3.877 25 F -0.133 7.133 26 C -0.191 4.191 27 C 0.134 3.866 28 F -0.125 7.125 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.030 0.970 32 H 0.020 0.980 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.071 -28.439 -0.592 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.019 3.981 11 C 0.027 3.973 12 H 0.093 0.907 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.023 4.023 16 N -0.348 5.348 17 C 0.313 3.687 18 O -0.405 6.405 19 C -0.169 4.169 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.076 4.076 23 C -0.181 4.181 24 C 0.103 3.897 25 F -0.112 7.112 26 C -0.210 4.210 27 C 0.115 3.885 28 F -0.103 7.103 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.163 0.837 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.319 -27.995 0.019 28.936 hybrid contribution 0.514 0.876 -0.234 1.042 sum 7.832 -27.119 -0.216 28.228 Atomic orbital electron populations 1.69647 1.05052 1.25681 1.58012 1.24720 0.95551 0.97608 1.03175 0.86250 0.78496 0.83498 0.77853 1.21319 1.21695 1.21281 1.19166 0.90977 0.84032 1.42404 0.91344 1.42187 1.05738 0.99686 1.89639 1.20923 0.93377 0.85195 0.98596 1.21805 0.94381 0.83089 0.98039 0.90680 1.22658 1.01819 0.95301 0.96014 1.22800 0.96608 0.96763 1.01096 1.22318 0.98121 0.96214 0.85665 1.48563 1.50791 1.20070 1.15386 1.20166 0.79159 0.86881 0.82474 1.90760 1.63045 1.58563 1.28174 1.21615 0.99730 0.96079 0.99520 1.20311 0.99129 0.93361 0.97614 1.20106 0.93761 0.97391 1.01065 1.20867 0.99993 0.90008 0.96722 1.21226 0.93653 1.00305 1.02877 1.17308 0.90884 0.81365 1.00104 1.91537 1.78763 1.46896 1.93978 1.21047 1.02763 0.90830 1.06403 1.17203 0.91904 0.81503 0.97934 1.91568 1.85593 1.46288 1.86854 0.93527 0.78321 0.95263 0.96205 0.89801 0.89870 0.90844 0.90005 0.91357 0.90965 0.88917 0.88893 0.89281 0.89151 0.83669 0.83953 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.18 5.38 -59.91 -0.32 -19.50 16 10 C 0.15 3.25 5.64 -4.04 -0.02 3.23 16 11 C 0.13 2.26 2.91 -66.95 -0.20 2.06 16 12 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 13 C -0.12 -1.74 6.11 -24.89 -0.15 -1.90 16 14 C -0.13 -1.37 7.09 -24.58 -0.17 -1.54 16 15 C 0.10 1.01 6.65 -2.53 -0.02 0.99 16 16 N -0.61 -8.76 3.07 -163.01 -0.50 -9.26 16 17 C 0.53 7.76 7.59 -10.99 -0.08 7.68 16 18 O -0.53 -10.19 15.18 5.55 0.08 -10.11 16 19 C -0.13 -1.28 4.77 -27.88 -0.13 -1.41 16 20 C -0.07 -0.66 4.41 -27.88 -0.12 -0.78 16 21 C -0.12 -1.01 5.14 -104.55 -0.54 -1.55 16 22 C -0.06 -0.36 9.67 -39.60 -0.38 -0.75 16 23 C -0.16 -1.00 10.03 -39.50 -0.40 -1.40 16 24 C 0.12 0.94 7.30 -39.43 -0.29 0.65 16 25 F -0.13 -1.11 17.27 2.25 0.04 -1.07 16 26 C -0.19 -1.51 10.01 -39.45 -0.39 -1.91 16 27 C 0.13 1.22 7.24 -39.43 -0.29 0.93 16 28 F -0.12 -1.34 16.57 2.25 0.04 -1.31 16 29 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.38 10.39 7.53 -40.82 -0.31 10.09 16 31 H 0.03 0.73 6.95 -51.93 -0.36 0.36 16 32 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.32 7.81 -51.93 -0.41 0.91 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.54 7.50 -51.93 -0.39 0.15 16 39 H 0.09 0.68 7.76 -51.93 -0.40 0.28 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.06 7.75 -51.92 -0.40 0.66 16 42 H 0.09 0.87 8.01 -51.93 -0.42 0.45 16 43 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 45 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -34.40 381.99 -9.09 -43.49 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.46 Total: 5.16 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -3.43 Total: -3.21 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.10 Total: -56.74 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.40 -9.09 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324252474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.663 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds