Wall clock time and date at job start Tue Mar 31 2020 21:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00015 * 89.99305 * 12 11 10 14 14 C 1.50700 * 109.47024 * 90.00576 * 13 12 11 15 15 C 1.38228 * 119.99960 * 269.72643 * 14 13 12 16 16 C 1.38236 * 119.99933 * 179.78906 * 15 14 13 17 17 C 1.38242 * 119.99731 * 0.43610 * 16 15 14 18 18 C 1.38227 * 120.00031 * 359.81724 * 17 16 15 19 19 C 1.38234 * 120.00134 * 359.97438 * 18 17 16 20 20 C 1.34780 * 119.99575 * 270.00486 * 12 11 10 21 21 O 1.21276 * 119.99931 * 359.97438 * 20 12 11 22 22 C 1.50702 * 119.99636 * 179.97438 * 20 12 11 23 23 H 1.08992 * 115.55421 * 325.72092 * 22 20 12 24 24 C 1.53003 * 117.49638 * 111.38593 * 22 20 12 25 25 C 1.52997 * 60.00017 * 107.48930 * 24 22 20 26 26 H 1.09002 * 117.49873 * 252.51032 * 25 24 22 27 27 C 1.53003 * 117.50020 * 107.48699 * 25 24 22 28 28 F 1.39899 * 109.47048 * 111.38250 * 27 25 24 29 29 F 1.39903 * 109.47085 * 231.37833 * 27 25 24 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 35 35 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 36 36 H 1.09006 * 109.47427 * 210.00270 * 13 12 11 37 37 H 1.08998 * 109.47658 * 330.00592 * 13 12 11 38 38 H 1.07993 * 120.00310 * 359.97438 * 15 14 13 39 39 H 1.08001 * 120.00547 * 180.27677 * 16 15 14 40 40 H 1.08003 * 119.99888 * 179.83709 * 17 16 15 41 41 H 1.08005 * 119.99952 * 179.97438 * 18 17 16 42 42 H 1.08004 * 120.00001 * 179.97438 * 19 18 17 43 43 H 1.08999 * 117.49604 * 214.97672 * 24 22 20 44 44 H 1.08997 * 117.50242 * 0.02562 * 24 22 20 45 45 H 1.08999 * 109.46826 * 351.38047 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 7 1.7960 -6.0885 0.0188 13 6 2.1623 -6.7167 1.2905 14 6 1.0573 -7.6425 1.7300 15 6 0.0353 -7.1678 2.5304 16 6 -0.9806 -8.0160 2.9299 17 6 -0.9695 -9.3411 2.5363 18 6 0.0554 -9.8171 1.7402 19 6 1.0689 -8.9679 1.3372 20 6 2.1331 -6.6776 -1.1457 21 8 1.8296 -6.1575 -2.1984 22 6 2.8869 -7.9824 -1.1394 23 1 3.6017 -8.1086 -0.3263 24 6 2.1460 -9.2287 -1.6283 25 6 3.2403 -8.6006 -2.4936 26 1 2.9276 -8.0634 -3.3891 27 6 4.5706 -9.3485 -2.6032 28 9 4.7227 -9.8415 -3.9036 29 9 5.6227 -8.4741 -2.3100 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 0.4367 -4.7574 0.9022 35 1 0.4373 -4.7664 -0.8777 36 1 3.0835 -7.2854 1.1629 37 1 2.3127 -5.9461 2.0465 38 1 0.0287 -6.1336 2.8412 39 1 -1.7816 -7.6440 3.5516 40 1 -1.7618 -10.0044 2.8506 41 1 0.0643 -10.8525 1.4331 42 1 1.8699 -9.3399 0.7155 43 1 2.3738 -10.1746 -1.1370 44 1 1.1135 -9.1047 -1.9548 45 1 4.5802 -10.1783 -1.8965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325689607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:37 Heat of formation + Delta-G solvation = -69.179678 kcal Electronic energy + Delta-G solvation = -29167.092081 eV Core-core repulsion = 24821.520835 eV Total energy + Delta-G solvation = -4345.571246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.17445 -47.20511 -40.56814 -39.15817 -37.27663 -35.88974 -34.51736 -32.04036 -31.12632 -30.95866 -28.50840 -27.44118 -26.18253 -24.70980 -23.13182 -22.78387 -21.85158 -21.73224 -21.21950 -19.12966 -18.11661 -17.48997 -17.32977 -17.19378 -16.79620 -16.48728 -16.05876 -15.61709 -15.08892 -14.93394 -14.49099 -14.31820 -14.10531 -13.87436 -13.63326 -13.57469 -13.54566 -13.23625 -13.21230 -13.05934 -12.96196 -12.64628 -12.50806 -12.14900 -11.65331 -11.34157 -11.26330 -11.13103 -11.09320 -10.96048 -10.90070 -10.82439 -10.64577 -10.13724 -9.85780 -9.68537 -9.10431 -9.02650 -8.85622 -8.60159 -6.92387 -5.74856 -3.04183 1.08698 1.21524 2.34317 2.84237 3.20692 3.43811 3.46340 3.50491 3.51907 3.64921 3.84817 4.06207 4.17063 4.44439 4.48795 4.58992 4.63250 4.66471 4.75739 4.81884 4.86167 4.91126 4.99870 5.09795 5.28443 5.39354 5.41624 5.46450 5.53048 5.64947 5.67772 5.77661 5.81147 5.83746 6.01057 6.09838 6.24624 6.32148 6.37412 6.53050 6.72310 6.79650 6.89630 7.40274 7.71417 8.19024 8.43628 9.54535 10.10264 10.45358 11.47982 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008473 B = 0.003341 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.838886 B = 8379.390773 C =11113.080523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.143 3.857 11 C 0.109 3.891 12 N -0.594 5.594 13 C 0.145 3.855 14 C -0.105 4.105 15 C -0.100 4.100 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.110 4.110 20 C 0.543 3.457 21 O -0.526 6.526 22 C -0.167 4.167 23 H 0.132 0.868 24 C -0.128 4.128 25 C -0.193 4.193 26 H 0.141 0.859 27 C 0.297 3.703 28 F -0.200 7.200 29 F -0.200 7.200 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.023 0.977 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -27.642 4.559 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.014 3.986 11 C -0.013 4.013 12 N -0.326 5.326 13 C 0.022 3.978 14 C -0.106 4.106 15 C -0.119 4.119 16 C -0.138 4.138 17 C -0.137 4.137 18 C -0.142 4.142 19 C -0.128 4.128 20 C 0.330 3.670 21 O -0.401 6.401 22 C -0.188 4.188 23 H 0.150 0.850 24 C -0.166 4.166 25 C -0.212 4.212 26 H 0.159 0.841 27 C 0.244 3.756 28 F -0.181 7.181 29 F -0.181 7.181 30 H 0.066 0.934 31 H 0.217 0.783 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.035 -27.186 3.958 27.639 hybrid contribution 0.215 1.025 0.062 1.049 sum 3.250 -26.160 4.020 26.666 Atomic orbital electron populations 1.69653 1.05109 1.25801 1.57678 1.24739 0.95546 0.97685 1.02907 0.86242 0.78514 0.83403 0.77883 1.21213 1.21640 1.21247 1.19164 0.90996 0.83976 1.42880 0.91241 1.42190 1.05827 0.99755 1.89687 1.20907 0.93843 0.85620 0.98197 1.21738 0.94782 0.81414 1.03361 1.47779 1.57058 1.22879 1.04882 1.20562 0.94960 0.95836 0.86414 1.20259 0.97516 0.94587 0.98239 1.21177 0.93677 0.99966 0.97041 1.21191 0.98597 0.93832 1.00169 1.21175 0.98488 0.95825 0.98235 1.21105 0.94845 0.99605 0.98646 1.21173 0.99019 0.93192 0.99454 1.19361 0.79205 0.84698 0.83702 1.90756 1.54121 1.64647 1.30619 1.22329 1.03827 0.94157 0.98455 0.85038 1.23162 0.98085 0.95163 1.00154 1.23403 0.95506 1.04230 0.98053 0.84087 1.21278 0.83710 0.89412 0.81249 1.93001 1.96115 1.88203 1.40824 1.93027 1.59851 1.72062 1.93177 0.93439 0.78274 0.95872 0.96387 0.90438 0.89667 0.89477 0.88677 0.85651 0.85985 0.86284 0.86211 0.85925 0.86927 0.86822 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.10 5.60 -59.91 -0.34 -19.44 16 10 C 0.14 3.02 6.58 -4.04 -0.03 2.99 16 11 C 0.11 1.86 5.52 -4.04 -0.02 1.84 16 12 N -0.59 -8.10 2.46 -175.06 -0.43 -8.53 16 13 C 0.15 1.44 5.38 -5.20 -0.03 1.42 16 14 C -0.10 -1.00 5.46 -104.63 -0.57 -1.57 16 15 C -0.10 -1.01 9.70 -39.59 -0.38 -1.39 16 16 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 17 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 18 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 19 C -0.11 -0.88 9.06 -39.58 -0.36 -1.24 16 20 C 0.54 7.83 7.46 -10.98 -0.08 7.75 16 21 O -0.53 -10.02 15.84 5.56 0.09 -9.93 16 22 C -0.17 -1.58 3.74 -91.77 -0.34 -1.92 16 23 H 0.13 0.93 6.44 -51.93 -0.33 0.59 16 24 C -0.13 -0.88 8.11 -26.73 -0.22 -1.09 16 25 C -0.19 -1.79 5.41 -90.62 -0.49 -2.28 16 26 H 0.14 1.67 7.67 -51.93 -0.40 1.27 16 27 C 0.30 2.42 5.50 37.16 0.20 2.62 16 28 F -0.20 -2.03 17.34 2.25 0.04 -1.99 16 29 F -0.20 -2.19 17.29 2.25 0.04 -2.15 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.38 10.42 7.67 -40.82 -0.31 10.10 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.08 1.64 7.42 -51.93 -0.39 1.25 16 36 H 0.09 0.66 5.94 -51.93 -0.31 0.35 16 37 H 0.09 0.94 8.01 -51.93 -0.42 0.52 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.12 0.73 4.85 -52.48 -0.25 0.48 16 43 H 0.11 0.38 7.61 -51.93 -0.40 -0.01 16 44 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.11 0.45 7.90 -51.93 -0.41 0.04 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -35.58 384.39 -9.00 -44.59 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.14 Total: 6.38 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.76 Total: -4.61 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.04 Total: -55.90 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.08 Total: -4.14 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.58 -9.00 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325689607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.591 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds