Wall clock time and date at job start Tue Mar 31 2020 21:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00015 * 89.99305 * 12 11 10 14 14 C 1.50700 * 109.47024 * 90.00576 * 13 12 11 15 15 C 1.38228 * 119.99960 * 269.72643 * 14 13 12 16 16 C 1.38236 * 119.99933 * 179.78906 * 15 14 13 17 17 C 1.38242 * 119.99731 * 0.43610 * 16 15 14 18 18 C 1.38227 * 120.00031 * 359.81724 * 17 16 15 19 19 C 1.38234 * 120.00134 * 359.97438 * 18 17 16 20 20 C 1.34780 * 119.99575 * 270.00486 * 12 11 10 21 21 O 1.21276 * 119.99931 * 359.97438 * 20 12 11 22 22 C 1.50702 * 119.99636 * 179.97438 * 20 12 11 23 23 H 1.08992 * 115.55421 * 325.72092 * 22 20 12 24 24 C 1.53003 * 117.49638 * 111.38593 * 22 20 12 25 25 C 1.52997 * 60.00017 * 107.48930 * 24 22 20 26 26 H 1.09002 * 117.49873 * 252.51032 * 25 24 22 27 27 C 1.53003 * 117.50020 * 107.48699 * 25 24 22 28 28 F 1.39899 * 109.47048 * 111.38250 * 27 25 24 29 29 F 1.39903 * 109.47085 * 231.37833 * 27 25 24 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 35 35 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 36 36 H 1.09006 * 109.47427 * 210.00270 * 13 12 11 37 37 H 1.08998 * 109.47658 * 330.00592 * 13 12 11 38 38 H 1.07993 * 120.00310 * 359.97438 * 15 14 13 39 39 H 1.08001 * 120.00547 * 180.27677 * 16 15 14 40 40 H 1.08003 * 119.99888 * 179.83709 * 17 16 15 41 41 H 1.08005 * 119.99952 * 179.97438 * 18 17 16 42 42 H 1.08004 * 120.00001 * 179.97438 * 19 18 17 43 43 H 1.08999 * 117.49604 * 214.97672 * 24 22 20 44 44 H 1.08997 * 117.50242 * 0.02562 * 24 22 20 45 45 H 1.08999 * 109.46826 * 351.38047 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 7 1.7960 -6.0885 0.0188 13 6 2.1623 -6.7167 1.2905 14 6 1.0573 -7.6425 1.7300 15 6 0.0353 -7.1678 2.5304 16 6 -0.9806 -8.0160 2.9299 17 6 -0.9695 -9.3411 2.5363 18 6 0.0554 -9.8171 1.7402 19 6 1.0689 -8.9679 1.3372 20 6 2.1331 -6.6776 -1.1457 21 8 1.8296 -6.1575 -2.1984 22 6 2.8869 -7.9824 -1.1394 23 1 3.6017 -8.1086 -0.3263 24 6 2.1460 -9.2287 -1.6283 25 6 3.2403 -8.6006 -2.4936 26 1 2.9276 -8.0634 -3.3891 27 6 4.5706 -9.3485 -2.6032 28 9 4.7227 -9.8415 -3.9036 29 9 5.6227 -8.4741 -2.3100 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 0.4367 -4.7574 0.9022 35 1 0.4373 -4.7664 -0.8777 36 1 3.0835 -7.2854 1.1629 37 1 2.3127 -5.9461 2.0465 38 1 0.0287 -6.1336 2.8412 39 1 -1.7816 -7.6440 3.5516 40 1 -1.7618 -10.0044 2.8506 41 1 0.0643 -10.8525 1.4331 42 1 1.8699 -9.3399 0.7155 43 1 2.3738 -10.1746 -1.1370 44 1 1.1135 -9.1047 -1.9548 45 1 4.5802 -10.1783 -1.8965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325689607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:35 Heat of formation + Delta-G solvation = -90.703432 kcal Electronic energy + Delta-G solvation = -29168.025421 eV Core-core repulsion = 24821.520835 eV Total energy + Delta-G solvation = -4346.504586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.85870 -47.91350 -41.55953 -39.87259 -38.20317 -37.14721 -36.25958 -33.64710 -32.26675 -31.72779 -29.99583 -28.26009 -27.07602 -26.18821 -24.55287 -23.52486 -22.94526 -22.42720 -22.34009 -20.12692 -19.28417 -18.90695 -18.16511 -18.01581 -17.55566 -17.36411 -17.22360 -16.67164 -16.36224 -15.79414 -15.73584 -15.56601 -15.24463 -15.17817 -14.83021 -14.75049 -14.47730 -14.29785 -14.16094 -14.02148 -13.88345 -13.38888 -13.15783 -13.12399 -13.04581 -12.91602 -12.82119 -12.43678 -12.21498 -12.09041 -11.98738 -11.90234 -11.76055 -11.65923 -11.54957 -11.00461 -10.95325 -9.87266 -9.72721 -9.62279 -9.10013 -8.00278 -5.31498 0.42203 0.59097 1.34917 1.44299 1.48494 1.54526 1.83942 2.48508 2.53553 2.77057 3.00432 3.28771 3.32863 3.37649 3.48187 3.70185 3.81520 3.84840 3.97115 4.06329 4.08514 4.18384 4.22377 4.24291 4.25720 4.31640 4.37619 4.51264 4.64342 4.65652 4.76472 4.80189 4.89181 4.95395 4.99754 5.04681 5.15903 5.23250 5.36495 5.45114 5.63447 5.70831 5.75046 6.18832 6.20820 6.32192 7.08118 7.27044 7.97955 8.23671 9.22878 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008473 B = 0.003341 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.838886 B = 8379.390773 C =11113.080523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.978 3.022 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.254 4.254 8 H 0.073 0.927 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.126 3.874 12 N -0.591 5.591 13 C 0.142 3.858 14 C -0.117 4.117 15 C -0.123 4.123 16 C -0.136 4.136 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.108 4.108 20 C 0.533 3.467 21 O -0.587 6.587 22 C -0.173 4.173 23 H 0.167 0.833 24 C -0.095 4.095 25 C -0.208 4.208 26 H 0.101 0.899 27 C 0.295 3.705 28 F -0.216 7.216 29 F -0.220 7.220 30 H 0.254 0.746 31 H 0.375 0.625 32 H -0.002 1.002 33 H 0.033 0.967 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.101 0.899 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -30.796 5.982 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.386 4.386 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.022 3.978 11 C 0.002 3.998 12 N -0.321 5.321 13 C 0.021 3.979 14 C -0.118 4.118 15 C -0.141 4.141 16 C -0.154 4.154 17 C -0.143 4.143 18 C -0.142 4.142 19 C -0.126 4.126 20 C 0.323 3.677 21 O -0.467 6.467 22 C -0.193 4.193 23 H 0.184 0.816 24 C -0.132 4.132 25 C -0.228 4.228 26 H 0.120 0.880 27 C 0.242 3.758 28 F -0.197 7.197 29 F -0.201 7.201 30 H 0.063 0.937 31 H 0.207 0.793 32 H 0.016 0.984 33 H 0.050 0.950 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.185 0.815 44 H 0.119 0.881 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.407 -30.389 5.420 31.181 hybrid contribution -0.247 1.955 -0.393 2.010 sum 4.160 -28.434 5.027 29.173 Atomic orbital electron populations 1.69814 1.06639 1.26438 1.58852 1.25620 0.96488 1.01213 1.03013 0.85159 0.77255 0.78738 0.78276 1.20728 1.21652 1.19801 1.19557 0.91415 0.85231 1.42362 0.90933 1.42373 1.05631 1.00947 1.89637 1.20936 0.94265 0.85279 0.97270 1.21278 0.93812 0.82158 1.02517 1.47842 1.56234 1.21448 1.06568 1.20832 0.96600 0.96169 0.84319 1.20234 0.97256 0.95444 0.98861 1.21258 0.94784 0.99837 0.98259 1.21374 0.98694 0.94615 1.00748 1.21502 0.99309 0.95508 0.97987 1.21503 0.94030 1.01009 0.97662 1.21477 0.99775 0.92298 0.99063 1.20333 0.78564 0.86076 0.82723 1.90729 1.56603 1.66623 1.32765 1.22351 1.04881 0.92367 0.99724 0.81610 1.23416 0.96635 0.95618 0.97544 1.23332 0.97639 1.05230 0.96601 0.88047 1.21836 0.82000 0.90340 0.81575 1.92969 1.96081 1.88274 1.42387 1.92989 1.60763 1.73103 1.93241 0.93735 0.79295 0.98390 0.94957 0.89133 0.92577 0.86176 0.88951 0.86846 0.85520 0.84434 0.83182 0.83218 0.81543 0.88062 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.25 -14.97 9.99 84.03 0.84 -14.13 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -40.33 5.60 -343.46 -1.92 -42.26 16 10 C 0.15 6.59 6.58 86.38 0.57 7.16 16 11 C 0.13 4.50 5.52 86.38 0.48 4.98 16 12 N -0.59 -16.06 2.46 -826.16 -2.03 -18.09 16 13 C 0.14 2.57 5.38 85.63 0.46 3.03 16 14 C -0.12 -2.00 5.46 -19.87 -0.11 -2.11 16 15 C -0.12 -2.42 9.70 22.27 0.22 -2.20 16 16 C -0.14 -2.37 10.05 22.27 0.22 -2.14 16 17 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 18 C -0.12 -1.39 10.05 22.27 0.22 -1.17 16 19 C -0.11 -1.31 9.06 22.27 0.20 -1.10 16 20 C 0.53 15.44 7.46 87.66 0.65 16.09 16 21 O -0.59 -23.79 15.84 -3.02 -0.05 -23.84 16 22 C -0.17 -2.82 3.74 -11.54 -0.04 -2.87 16 23 H 0.17 1.53 6.44 -2.39 -0.02 1.52 16 24 C -0.10 -0.92 8.11 30.59 0.25 -0.67 16 25 C -0.21 -3.52 5.41 -10.79 -0.06 -3.58 16 26 H 0.10 2.55 7.67 -2.39 -0.02 2.53 16 27 C 0.30 3.92 5.50 71.98 0.40 4.32 16 28 F -0.22 -4.04 17.34 44.97 0.78 -3.26 16 29 F -0.22 -4.38 17.29 44.97 0.78 -3.60 16 30 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.38 21.33 7.67 -92.71 -0.71 20.62 16 32 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 2.97 8.07 -2.38 -0.02 2.95 16 35 H 0.06 2.33 7.42 -2.39 -0.02 2.31 16 36 H 0.12 1.36 5.94 -2.38 -0.01 1.35 16 37 H 0.09 1.73 8.01 -2.39 -0.02 1.71 16 38 H 0.11 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 41 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.15 0.88 4.85 -2.91 -0.01 0.87 16 43 H 0.17 -0.14 7.61 -2.39 -0.02 -0.15 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.17 0.33 7.90 -2.39 -0.02 0.31 16 Total: -1.00 -83.08 384.39 5.17 -77.92 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.31 Total: 23.77 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.99 Total: 0.37 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -3.67 Total: -120.80 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 1.56 Total: -6.86 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -83.08 5.17 -77.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325689607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.785 kcal (2) G-P(sol) polarization free energy of solvation -83.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds