Wall clock time and date at job start Tue Mar 31 2020 21:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99872 * 180.02562 * 18 17 16 21 21 C 1.50703 * 109.47046 * 180.02562 * 20 18 17 22 22 C 1.38265 * 119.96330 * 269.72435 * 21 20 18 23 23 C 1.38207 * 120.06729 * 179.76450 * 22 21 20 24 24 C 1.38406 * 120.00588 * 0.51378 * 23 22 21 25 25 F 1.35097 * 120.04017 * 179.72519 * 24 23 22 26 26 C 1.38658 * 119.92530 * 359.73856 * 24 23 22 27 27 F 1.35096 * 120.03313 * 180.02562 * 26 24 23 28 28 C 1.38211 * 119.96874 * 89.99961 * 21 20 18 29 29 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 33 33 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 34 34 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 35 35 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 36 36 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 37 37 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 38 38 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 39 39 H 1.08999 * 109.47802 * 300.00200 * 20 18 17 40 40 H 1.08999 * 109.47403 * 60.00515 * 20 18 17 41 41 H 1.07999 * 119.96303 * 0.02562 * 22 21 20 42 42 H 1.08007 * 119.99877 * 180.25321 * 23 22 21 43 43 H 1.08004 * 119.99461 * 0.02562 * 28 21 20 44 44 H 1.09002 * 110.48043 * 217.71140 * 29 14 13 45 45 H 1.09002 * 110.60152 * 95.12776 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5532 -3.2379 -0.5375 12 6 4.4236 -2.9249 1.4467 13 6 5.6485 -3.8507 1.2975 14 6 6.3476 -3.4472 -0.0126 15 1 6.3646 -4.2912 -0.7021 16 6 7.7746 -2.9781 0.2778 17 7 8.5785 -4.1140 0.7354 18 6 9.8767 -3.9371 1.0515 19 8 10.3792 -2.8373 0.9576 20 6 10.7037 -5.1058 1.5217 21 6 12.1093 -4.6437 1.8079 22 6 13.0635 -4.6746 0.8078 23 6 14.3520 -4.2467 1.0665 24 6 14.6911 -3.7967 2.3307 25 9 15.9518 -3.3835 2.5858 26 6 13.7355 -3.7706 3.3351 27 9 14.0640 -3.3312 4.5696 28 6 12.4447 -4.1947 3.0713 29 6 5.5226 -2.2906 -0.6141 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 4.6684 -2.0660 2.0714 33 1 3.5794 -3.4735 1.8645 34 1 5.3263 -4.8906 1.2438 35 1 6.3263 -3.7132 2.1400 36 1 8.2132 -2.5650 -0.6306 37 1 7.7545 -2.2116 1.0525 38 1 8.1767 -4.9937 0.8102 39 1 10.2655 -5.5191 2.4301 40 1 10.7236 -5.8720 0.7468 41 1 12.8006 -5.0295 -0.1778 42 1 15.0954 -4.2675 0.2833 43 1 11.6997 -4.1757 3.8530 44 1 5.4810 -2.3763 -1.6999 45 1 5.9437 -1.3279 -0.3242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479470708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:23 Heat of formation + Delta-G solvation = -103.563940 kcal Electronic energy + Delta-G solvation = -27718.008890 eV Core-core repulsion = 23370.946630 eV Total energy + Delta-G solvation = -4347.062260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.82666 -48.90343 -40.45503 -39.16766 -38.19217 -35.11702 -33.54225 -33.07151 -31.28759 -31.09370 -29.45421 -28.15961 -27.26187 -24.45517 -23.72757 -22.73697 -22.47532 -20.83391 -19.93890 -19.49361 -18.35684 -17.64371 -17.60026 -17.44216 -17.32476 -16.63211 -16.36864 -15.75619 -15.35951 -15.31161 -14.93152 -14.91545 -14.67978 -14.37092 -14.24800 -13.89628 -13.68378 -13.19021 -13.05898 -12.76720 -12.58378 -12.44759 -12.35823 -12.30170 -12.16708 -11.72539 -11.39080 -11.03765 -10.87370 -10.69545 -10.63642 -10.44302 -10.29552 -10.18029 -9.92244 -9.60374 -9.51718 -9.28338 -9.06364 -8.92670 -7.28004 -5.79145 -3.14575 0.42869 0.55283 2.34278 2.69443 3.12183 3.35879 3.36822 3.40012 3.44839 3.87438 3.98941 4.08834 4.47372 4.50352 4.57527 4.58522 4.69244 4.76732 4.80103 4.87839 4.91934 5.25632 5.34128 5.37171 5.41843 5.43882 5.52490 5.55068 5.59417 5.66541 5.76225 5.82848 5.88713 5.92493 6.04958 6.17895 6.22340 6.25276 6.28320 6.38399 6.56243 6.75695 6.94583 7.21665 7.94101 7.97476 8.40420 9.18877 9.91690 10.11278 11.39102 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.001753 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.922881 B =15969.156514 C =16423.293564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.182 3.818 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.076 0.924 16 C 0.126 3.874 17 N -0.726 5.726 18 C 0.510 3.490 19 O -0.532 6.532 20 C -0.104 4.104 21 C -0.046 4.046 22 C -0.086 4.086 23 C -0.123 4.123 24 C 0.065 3.935 25 F -0.130 7.130 26 C 0.070 3.930 27 F -0.129 7.129 28 C -0.111 4.111 29 C -0.127 4.127 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.401 0.599 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.067 0.933 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.533 -16.160 2.625 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.072 3.928 11 H 0.083 0.917 12 C -0.185 4.185 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.094 0.906 16 C 0.003 3.997 17 N -0.378 5.378 18 C 0.295 3.705 19 O -0.408 6.408 20 C -0.144 4.144 21 C -0.046 4.046 22 C -0.104 4.104 23 C -0.142 4.142 24 C 0.045 3.955 25 F -0.108 7.108 26 C 0.050 3.950 27 F -0.107 7.107 28 C -0.130 4.130 29 C -0.166 4.166 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.085 0.915 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 28.678 -15.355 2.600 32.634 hybrid contribution 0.596 1.041 0.420 1.270 sum 29.274 -14.315 3.019 32.726 Atomic orbital electron populations 1.69701 1.05112 1.25839 1.57474 1.24685 0.95249 0.97245 1.02006 0.86558 0.79243 0.84972 0.77804 1.21065 1.21754 1.20288 1.19090 0.80620 0.94691 1.43061 0.89210 1.42745 1.04026 1.02002 1.89809 1.21134 0.89848 0.89216 0.92628 0.91715 1.23042 0.96021 0.98533 1.00885 1.22214 0.97862 0.99647 0.96128 1.21954 0.92787 0.99213 0.98003 0.90573 1.21574 0.90003 0.88265 0.99882 1.46057 1.10418 1.13171 1.68174 1.20414 0.82205 0.90096 0.77744 1.90767 1.71473 1.26218 1.52378 1.20705 0.91574 0.97567 1.04566 1.19165 0.94669 0.98194 0.92619 1.20943 0.91625 0.98456 0.99364 1.21049 0.98272 1.00048 0.94818 1.17715 0.79806 1.03570 0.94400 1.91531 1.36631 1.88022 1.94655 1.17610 0.93861 1.03133 0.80423 1.91539 1.93011 1.87129 1.39030 1.20923 0.94202 0.99494 0.98407 1.22646 0.96600 0.97298 1.00059 0.93060 0.80576 0.91999 0.92069 0.92174 0.92326 0.91500 0.91197 0.76448 0.87263 0.87130 0.84226 0.83531 0.83701 0.91463 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.02 27.73 -169.99 -4.71 17.30 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.77 10.44 -15.06 -0.16 -6.93 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.74 -17.11 5.03 -51.51 -0.26 -17.37 16 10 C 0.18 3.25 3.56 -65.95 -0.23 3.02 16 11 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 12 C -0.14 -2.28 6.51 -25.07 -0.16 -2.44 16 13 C -0.12 -1.34 6.19 -25.61 -0.16 -1.50 16 14 C -0.10 -1.05 2.96 -89.50 -0.27 -1.32 16 15 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 16 C 0.13 1.29 4.69 -4.05 -0.02 1.27 16 17 N -0.73 -5.58 5.34 -60.30 -0.32 -5.90 16 18 C 0.51 4.52 7.82 -10.99 -0.09 4.44 16 19 O -0.53 -7.28 16.03 5.56 0.09 -7.19 16 20 C -0.10 -0.50 5.83 -29.03 -0.17 -0.67 16 21 C -0.05 -0.32 4.37 -104.62 -0.46 -0.77 16 22 C -0.09 -0.54 9.70 -39.58 -0.38 -0.92 16 23 C -0.12 -0.86 10.02 -39.53 -0.40 -1.25 16 24 C 0.07 0.60 7.31 -39.36 -0.29 0.32 16 25 F -0.13 -1.34 17.18 2.25 0.04 -1.30 16 26 C 0.07 0.67 7.31 -39.36 -0.29 0.39 16 27 F -0.13 -1.40 17.18 2.25 0.04 -1.36 16 28 C -0.11 -0.89 9.68 -39.53 -0.38 -1.28 16 29 C -0.13 -1.78 5.98 -25.09 -0.15 -1.93 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.36 8.23 5.62 -40.82 -0.23 8.00 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.61 7.61 -51.93 -0.40 0.22 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 1.93 8.35 -40.82 -0.34 1.59 16 39 H 0.11 0.29 8.08 -51.93 -0.42 -0.12 16 40 H 0.11 0.23 8.08 -51.93 -0.42 -0.19 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.97 7.73 -51.93 -0.40 0.57 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -34.70 382.19 -8.73 -43.44 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.45 Total: 4.50 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.69 Total: -9.57 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.19 Total: -51.58 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.09 Total: -7.19 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.70 -8.73 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479470708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.125 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds