Wall clock time and date at job start Tue Mar 31 2020 21:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99872 * 180.02562 * 18 17 16 21 21 C 1.50703 * 109.47046 * 180.02562 * 20 18 17 22 22 C 1.38265 * 119.96330 * 269.72435 * 21 20 18 23 23 C 1.38207 * 120.06729 * 179.76450 * 22 21 20 24 24 C 1.38406 * 120.00588 * 0.51378 * 23 22 21 25 25 F 1.35097 * 120.04017 * 179.72519 * 24 23 22 26 26 C 1.38658 * 119.92530 * 359.73856 * 24 23 22 27 27 F 1.35096 * 120.03313 * 180.02562 * 26 24 23 28 28 C 1.38211 * 119.96874 * 89.99961 * 21 20 18 29 29 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 33 33 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 34 34 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 35 35 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 36 36 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 37 37 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 38 38 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 39 39 H 1.08999 * 109.47802 * 300.00200 * 20 18 17 40 40 H 1.08999 * 109.47403 * 60.00515 * 20 18 17 41 41 H 1.07999 * 119.96303 * 0.02562 * 22 21 20 42 42 H 1.08007 * 119.99877 * 180.25321 * 23 22 21 43 43 H 1.08004 * 119.99461 * 0.02562 * 28 21 20 44 44 H 1.09002 * 110.48043 * 217.71140 * 29 14 13 45 45 H 1.09002 * 110.60152 * 95.12776 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5532 -3.2379 -0.5375 12 6 4.4236 -2.9249 1.4467 13 6 5.6485 -3.8507 1.2975 14 6 6.3476 -3.4472 -0.0126 15 1 6.3646 -4.2912 -0.7021 16 6 7.7746 -2.9781 0.2778 17 7 8.5785 -4.1140 0.7354 18 6 9.8767 -3.9371 1.0515 19 8 10.3792 -2.8373 0.9576 20 6 10.7037 -5.1058 1.5217 21 6 12.1093 -4.6437 1.8079 22 6 13.0635 -4.6746 0.8078 23 6 14.3520 -4.2467 1.0665 24 6 14.6911 -3.7967 2.3307 25 9 15.9518 -3.3835 2.5858 26 6 13.7355 -3.7706 3.3351 27 9 14.0640 -3.3312 4.5696 28 6 12.4447 -4.1947 3.0713 29 6 5.5226 -2.2906 -0.6141 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 4.6684 -2.0660 2.0714 33 1 3.5794 -3.4735 1.8645 34 1 5.3263 -4.8906 1.2438 35 1 6.3263 -3.7132 2.1400 36 1 8.2132 -2.5650 -0.6306 37 1 7.7545 -2.2116 1.0525 38 1 8.1767 -4.9937 0.8102 39 1 10.2655 -5.5191 2.4301 40 1 10.7236 -5.8720 0.7468 41 1 12.8006 -5.0295 -0.1778 42 1 15.0954 -4.2675 0.2833 43 1 11.6997 -4.1757 3.8530 44 1 5.4810 -2.3763 -1.6999 45 1 5.9437 -1.3279 -0.3242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479470708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:22 Heat of formation + Delta-G solvation = -126.123886 kcal Electronic energy + Delta-G solvation = -27718.987163 eV Core-core repulsion = 23370.946630 eV Total energy + Delta-G solvation = -4348.040532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.54051 -49.62894 -41.09880 -39.90645 -39.20322 -36.37479 -34.95268 -33.68563 -32.95379 -31.81512 -30.49714 -29.19084 -28.22923 -25.58789 -24.48023 -24.27209 -23.09914 -21.73808 -21.11574 -20.53171 -19.56126 -19.01035 -18.24676 -18.10786 -17.94772 -17.34761 -17.22753 -16.65324 -16.61271 -16.10385 -16.06036 -15.90505 -15.56347 -15.25146 -14.97799 -14.82188 -14.63398 -14.42336 -14.29259 -14.12037 -13.90871 -13.35295 -13.11345 -13.07402 -12.90716 -12.69098 -12.67704 -12.33145 -12.23825 -12.11009 -11.93626 -11.83963 -11.67557 -11.49048 -11.22797 -10.93946 -10.90817 -10.07329 -10.00540 -9.66280 -9.27127 -8.02351 -5.34341 -0.15405 0.01191 1.37408 1.39637 1.46925 1.72670 2.11094 2.47908 2.55012 2.78587 3.27657 3.28549 3.47327 3.57828 3.62422 3.70844 3.81671 3.99755 4.08448 4.12150 4.17974 4.40412 4.42420 4.52486 4.62951 4.63836 4.68234 4.76173 4.77312 4.81982 4.86058 4.90889 4.98414 5.03075 5.08732 5.16176 5.24061 5.33590 5.40908 5.50954 5.57536 5.60785 5.73692 5.79083 6.23195 6.66471 7.09066 7.36400 7.87854 8.04706 9.19196 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.001753 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.922881 B =15969.156514 C =16423.293564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.067 4.067 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.227 4.227 8 H 0.058 0.942 9 N -0.751 5.751 10 C 0.165 3.835 11 H 0.056 0.944 12 C -0.143 4.143 13 C -0.107 4.107 14 C -0.083 4.083 15 H 0.105 0.895 16 C 0.133 3.867 17 N -0.713 5.713 18 C 0.509 3.491 19 O -0.587 6.587 20 C -0.095 4.095 21 C -0.050 4.050 22 C -0.082 4.082 23 C -0.122 4.122 24 C 0.041 3.959 25 F -0.144 7.144 26 C 0.041 3.959 27 F -0.145 7.145 28 C -0.118 4.118 29 C -0.121 4.121 30 H 0.257 0.743 31 H 0.363 0.637 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.420 0.580 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.171 0.829 42 H 0.169 0.831 43 H 0.155 0.845 44 H 0.074 0.926 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.489 -18.204 1.688 35.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.180 1.180 7 C -0.358 4.358 8 H 0.076 0.924 9 N -0.393 5.393 10 C 0.057 3.943 11 H 0.074 0.926 12 C -0.183 4.183 13 C -0.145 4.145 14 C -0.103 4.103 15 H 0.124 0.876 16 C 0.009 3.991 17 N -0.366 5.366 18 C 0.296 3.704 19 O -0.467 6.467 20 C -0.134 4.134 21 C -0.050 4.050 22 C -0.100 4.100 23 C -0.140 4.140 24 C 0.021 3.979 25 F -0.122 7.122 26 C 0.021 3.979 27 F -0.124 7.124 28 C -0.137 4.137 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.196 0.804 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.257 0.743 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.188 0.812 42 H 0.186 0.814 43 H 0.173 0.827 44 H 0.093 0.907 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 30.679 -17.481 1.669 35.349 hybrid contribution -0.060 1.562 0.682 1.705 sum 30.619 -15.920 2.351 34.590 Atomic orbital electron populations 1.69879 1.07041 1.26516 1.60066 1.25486 0.96106 1.01135 1.03083 0.85439 0.78524 0.79922 0.78057 1.20414 1.22498 1.18000 1.19074 0.82770 0.93353 1.40572 0.92360 1.42803 1.02429 1.04121 1.89952 1.21474 0.91462 0.86917 0.94423 0.92613 1.22907 0.97892 0.98866 0.98641 1.22142 0.95696 0.99721 0.96958 1.21824 0.92049 0.98523 0.97865 0.87644 1.21296 0.90064 0.88749 0.98996 1.45883 1.10035 1.13285 1.67369 1.21089 0.82354 0.90377 0.76557 1.90761 1.72521 1.28661 1.54729 1.20795 0.89237 0.96377 1.06998 1.19512 0.96083 0.97383 0.92069 1.21376 0.90970 0.97146 1.00492 1.21372 0.99362 0.99067 0.94232 1.18072 0.79402 1.04922 0.95517 1.91486 1.37482 1.88403 1.94862 1.17970 0.95024 1.04722 0.80142 1.91485 1.93252 1.87585 1.40043 1.21162 0.93634 0.99319 0.99583 1.22554 0.94254 0.98664 1.00511 0.93467 0.80353 0.93699 0.93603 0.89634 0.91049 0.92154 0.93377 0.74277 0.84498 0.83254 0.81196 0.81396 0.82697 0.90704 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.19 13.97 21.65 0.30 -62.89 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.95 45.92 27.73 68.60 1.90 47.83 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 6 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 7 C -0.23 -12.79 10.44 84.04 0.88 -11.91 16 8 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 9 N -0.75 -34.33 5.03 -316.89 -1.59 -35.92 16 10 C 0.17 5.76 3.56 46.27 0.16 5.92 16 11 H 0.06 2.03 8.09 -2.39 -0.02 2.02 16 12 C -0.14 -4.34 6.51 31.67 0.21 -4.13 16 13 C -0.11 -2.00 6.19 31.32 0.19 -1.81 16 14 C -0.08 -1.43 2.96 -10.07 -0.03 -1.46 16 15 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 16 C 0.13 2.31 4.69 86.38 0.41 2.72 16 17 N -0.71 -7.85 5.34 -463.08 -2.47 -10.33 16 18 C 0.51 7.15 7.82 87.66 0.69 7.84 16 19 O -0.59 -14.88 16.03 -3.03 -0.05 -14.93 16 20 C -0.10 -0.46 5.83 29.10 0.17 -0.29 16 21 C -0.05 -0.54 4.37 -19.86 -0.09 -0.63 16 22 C -0.08 -0.77 9.70 22.27 0.22 -0.56 16 23 C -0.12 -1.49 10.02 22.30 0.22 -1.26 16 24 C 0.04 0.75 7.31 22.41 0.16 0.92 16 25 F -0.14 -3.07 17.18 44.97 0.77 -2.30 16 26 C 0.04 0.81 7.31 22.41 0.16 0.97 16 27 F -0.14 -3.33 17.18 44.97 0.77 -2.56 16 28 C -0.12 -1.75 9.68 22.30 0.22 -1.53 16 29 C -0.12 -3.10 5.98 31.66 0.19 -2.91 16 30 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 31 H 0.36 16.17 5.62 -92.71 -0.52 15.65 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.21 7.61 -2.38 -0.02 1.19 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.42 1.63 8.35 -92.71 -0.77 0.86 16 39 H 0.14 -0.02 8.08 -2.39 -0.02 -0.04 16 40 H 0.15 -0.36 8.08 -2.39 -0.02 -0.38 16 41 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 42 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.64 7.73 -2.39 -0.02 1.62 16 Total: -1.00 -80.68 382.19 3.53 -77.15 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.33 Total: 15.56 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 4.23 Total: -11.61 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -3.77 Total: -109.14 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.05 Total: -14.93 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 1.55 Total: -4.86 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.83 kcal Total: -80.68 3.53 -77.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479470708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.978 kcal (2) G-P(sol) polarization free energy of solvation -80.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds