Wall clock time and date at job start Tue Mar 31 2020 21:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99597 * 2 1 4 4 H 1.48501 * 109.47027 * 270.00248 * 3 2 1 5 5 H 1.48496 * 109.47150 * 30.00013 * 3 2 1 6 6 H 1.48499 * 109.47020 * 150.00564 * 3 2 1 7 7 C 1.38811 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00129 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99857 * 180.02562 * 7 2 1 10 10 C 1.46491 * 119.99917 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47491 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.49641 * 305.06438 * 11 10 9 13 13 C 1.53039 * 109.50094 * 184.99804 * 11 10 9 14 14 C 1.53040 * 109.53579 * 178.64928 * 13 11 10 15 15 C 1.53191 * 109.31454 * 61.36967 * 14 13 11 16 16 N 1.46927 * 108.77356 * 305.36260 * 15 14 13 17 17 C 1.34777 * 120.63303 * 233.58945 * 16 15 14 18 18 O 1.21283 * 120.00463 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99675 * 359.72079 * 17 16 15 20 20 C 1.50703 * 109.47148 * 180.28037 * 19 17 16 21 21 C 1.38262 * 119.99603 * 264.72542 * 20 19 17 22 22 C 1.38218 * 120.06674 * 179.77202 * 21 20 19 23 23 C 1.38257 * 120.07027 * 0.50115 * 22 21 20 24 24 C 1.38368 * 120.00192 * 359.74929 * 23 22 21 25 25 F 1.35099 * 120.03772 * 180.02562 * 24 23 22 26 26 C 1.38368 * 120.00360 * 84.99620 * 20 19 17 27 27 F 1.35097 * 120.03311 * 359.95805 * 26 20 19 28 28 C 1.46925 * 118.74028 * 53.85668 * 16 15 14 29 29 H 0.97004 * 120.00555 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99695 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47332 * 59.99253 * 10 9 7 32 32 H 1.09006 * 109.47409 * 299.99862 * 10 9 7 33 33 H 1.08996 * 109.46168 * 58.63301 * 13 11 10 34 34 H 1.08999 * 109.44913 * 298.65933 * 13 11 10 35 35 H 1.08993 * 109.50223 * 301.41324 * 14 13 11 36 36 H 1.09007 * 109.49588 * 181.31559 * 14 13 11 37 37 H 1.08996 * 109.59004 * 185.57535 * 15 14 13 38 38 H 1.08997 * 109.70978 * 65.21642 * 15 14 13 39 39 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 40 40 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 41 41 H 1.07995 * 119.96653 * 0.02562 * 21 20 19 42 42 H 1.07997 * 119.96264 * 180.27196 * 22 21 20 43 43 H 1.08002 * 119.99641 * 179.73291 * 23 22 21 44 44 H 1.09005 * 109.58329 * 65.93269 * 28 16 15 45 45 H 1.09000 * 109.58776 * 186.35431 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4706 0.0000 11 6 5.6164 -2.1911 0.0000 12 1 5.8662 -1.5443 -0.8410 13 6 6.3813 -3.5106 -0.1257 14 6 7.8852 -3.2292 -0.1597 15 6 8.3034 -2.5508 1.1486 16 7 7.4706 -1.3572 1.3496 17 6 8.0366 -0.1534 1.5663 18 8 7.3382 0.8245 1.7303 19 6 9.5373 -0.0235 1.6106 20 6 9.9097 1.4132 1.8720 21 6 10.2037 2.2544 0.8148 22 6 10.5408 3.5736 1.0525 23 6 10.5949 4.0521 2.3485 24 6 10.3062 3.2114 3.4090 25 9 10.3583 3.6784 4.6756 26 6 9.9629 1.8891 3.1702 27 9 9.6803 1.0665 4.2039 28 6 6.0088 -1.5017 1.3156 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3619 0.0004 31 1 3.8492 -3.0421 -0.8902 32 1 3.8486 -3.0425 0.8898 33 1 6.0856 -4.0156 -1.0452 34 1 6.1502 -4.1469 0.7286 35 1 8.1137 -2.5727 -0.9991 36 1 8.4284 -4.1675 -0.2727 37 1 9.3520 -2.2591 1.0901 38 1 8.1617 -3.2395 1.9815 39 1 9.9331 -0.6522 2.4083 40 1 9.9578 -0.3399 0.6561 41 1 10.1659 1.8814 -0.1980 42 1 10.7659 4.2303 0.2252 43 1 10.8626 5.0820 2.5331 44 1 5.6819 -2.1079 2.1606 45 1 5.5430 -0.5177 1.3673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690425521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:42 Heat of formation + Delta-G solvation = -90.270478 kcal Electronic energy + Delta-G solvation = -29473.689111 eV Core-core repulsion = 25127.203299 eV Total energy + Delta-G solvation = -4346.485812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.67993 -48.76100 -40.48039 -39.17900 -37.64594 -35.13409 -33.40120 -32.81527 -31.78586 -30.61077 -30.28350 -28.41302 -25.78667 -25.28748 -23.14774 -22.96224 -22.61757 -21.28529 -20.34681 -19.11124 -18.12940 -17.69480 -17.59705 -17.29321 -17.07139 -16.42997 -15.91375 -15.44675 -15.15851 -15.14518 -14.76430 -14.68074 -14.64299 -14.14811 -14.08051 -13.81573 -13.50841 -13.31061 -13.12008 -12.98366 -12.65998 -12.50081 -12.44221 -12.29106 -12.05046 -11.73790 -11.52079 -11.40461 -11.20437 -10.91894 -10.71111 -10.49228 -10.29705 -10.05826 -9.89661 -9.53173 -9.20351 -9.01314 -8.86841 -8.63964 -7.19352 -5.72870 -3.08470 0.62127 0.65018 2.54730 2.79899 3.14000 3.44747 3.49194 3.52178 3.54378 3.99175 4.12907 4.32771 4.37534 4.53757 4.61783 4.65448 4.71153 4.76638 4.83146 4.92083 4.98916 5.06317 5.19345 5.26632 5.40407 5.48026 5.51015 5.58308 5.61878 5.62880 5.70647 5.74761 5.80413 5.88815 5.90004 5.98346 6.00835 6.27169 6.33272 6.42321 6.48485 6.65711 6.75515 7.33341 8.02749 8.11450 8.46107 9.25269 9.98144 10.17198 11.45363 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.003408 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.300671 B = 8214.695874 C = 9941.627125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.110 4.110 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.105 3.895 16 N -0.611 5.611 17 C 0.513 3.487 18 O -0.526 6.526 19 C -0.102 4.102 20 C -0.072 4.072 21 C -0.088 4.088 22 C -0.098 4.098 23 C -0.127 4.127 24 C 0.067 3.933 25 F -0.129 7.129 26 C 0.083 3.917 27 F -0.126 7.126 28 C 0.118 3.882 29 H 0.259 0.741 30 H 0.362 0.638 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.070 0.930 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.870 -1.281 1.528 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.037 3.963 11 C -0.130 4.130 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.018 4.018 16 N -0.345 5.345 17 C 0.300 3.700 18 O -0.402 6.402 19 C -0.142 4.142 20 C -0.073 4.073 21 C -0.107 4.107 22 C -0.117 4.117 23 C -0.146 4.146 24 C 0.047 3.953 25 F -0.108 7.108 26 C 0.062 3.938 27 F -0.104 7.104 28 C -0.004 4.004 29 H 0.069 0.931 30 H 0.195 0.805 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.088 0.912 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 29.235 -0.851 1.728 29.298 hybrid contribution 0.400 1.094 0.455 1.250 sum 29.635 0.243 2.182 29.716 Atomic orbital electron populations 1.69699 1.05110 1.25836 1.57594 1.24644 0.95200 0.97165 1.01886 0.86627 0.79665 0.85001 0.77856 1.21126 1.21669 1.19798 1.19042 0.80625 0.94696 1.43136 0.89208 1.42772 1.04119 1.02241 1.91160 1.20615 0.87391 0.89447 0.98858 1.21821 0.96902 0.96684 0.97608 0.90833 1.21511 0.93720 0.97187 1.02628 1.21914 0.97295 1.00678 0.97281 1.21788 0.94558 0.87245 0.98237 1.48166 1.07791 1.07299 1.71218 1.20325 0.89738 0.82976 0.76968 1.90785 1.63984 1.36872 1.48511 1.20664 0.94417 0.93688 1.05445 1.19266 1.00666 0.96409 0.90997 1.21003 0.97789 0.93219 0.98657 1.21049 0.98802 0.95565 0.96247 1.21101 1.01644 1.00312 0.91529 1.17640 1.05749 0.91478 0.80409 1.91531 1.94160 1.88573 1.36527 1.17462 1.03966 0.87432 0.84914 1.91520 1.91100 1.71117 1.56681 1.21847 0.77851 1.03235 0.97442 0.93076 0.80511 0.95150 0.95411 0.91255 0.91523 0.91479 0.90670 0.90066 0.91055 0.87433 0.86958 0.84256 0.84053 0.83681 0.91169 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.14 13.97 55.49 0.78 -29.36 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 23.40 27.74 -169.99 -4.71 18.69 16 4 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 5 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -7.10 6.52 56.52 0.37 -6.73 16 7 C -0.25 -7.13 10.47 -15.06 -0.16 -7.29 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.76 -18.50 5.18 -59.91 -0.31 -18.81 16 10 C 0.16 3.14 5.65 -4.05 -0.02 3.11 16 11 C -0.11 -1.64 2.38 -90.28 -0.22 -1.86 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.11 -1.20 5.16 -26.69 -0.14 -1.34 16 14 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 15 C 0.10 0.85 6.34 -3.71 -0.02 0.83 16 16 N -0.61 -7.71 2.97 -172.50 -0.51 -8.22 16 17 C 0.51 7.14 7.69 -10.98 -0.08 7.06 16 18 O -0.53 -10.03 15.45 5.55 0.09 -9.94 16 19 C -0.10 -0.94 3.95 -29.03 -0.11 -1.06 16 20 C -0.07 -0.77 4.38 -104.56 -0.46 -1.23 16 21 C -0.09 -0.76 9.68 -39.58 -0.38 -1.15 16 22 C -0.10 -0.75 10.04 -39.58 -0.40 -1.15 16 23 C -0.13 -1.12 10.02 -39.53 -0.40 -1.52 16 24 C 0.07 0.79 7.31 -39.37 -0.29 0.50 16 25 F -0.13 -1.64 17.18 2.25 0.04 -1.60 16 26 C 0.08 1.03 7.25 -39.37 -0.29 0.75 16 27 F -0.13 -1.74 16.48 2.25 0.04 -1.70 16 28 C 0.12 1.85 5.55 -3.49 -0.02 1.83 16 29 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 30 H 0.36 8.89 4.78 -40.82 -0.19 8.70 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.44 5.94 -51.93 -0.31 0.13 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.11 0.82 7.59 -51.92 -0.39 0.42 16 40 H 0.11 0.65 7.60 -51.93 -0.39 0.26 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 1.93 6.23 -51.93 -0.32 1.61 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -36.90 373.12 -8.50 -45.40 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.28 Total: 3.54 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.24 Total: -3.62 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.05 Total: -56.39 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.08 Total: -3.30 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.71 Total: 18.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.90 -8.50 -45.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690425521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.869 kcal (2) G-P(sol) polarization free energy of solvation -36.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds