Wall clock time and date at job start Tue Mar 31 2020 21:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.01161 * 53.61216 * 11 10 9 13 13 C 1.54262 * 110.03390 * 292.17070 * 11 10 9 14 14 C 1.54897 * 104.19472 * 217.10213 * 13 11 10 15 15 C 1.54888 * 102.74840 * 37.94282 * 14 13 11 16 16 H 1.09002 * 110.60239 * 80.79079 * 15 14 13 17 17 N 1.46494 * 110.48676 * 203.38158 * 15 14 13 18 18 C 1.34779 * 120.00027 * 269.77366 * 17 15 14 19 19 O 1.21286 * 120.00074 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00295 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.47526 * 180.02562 * 20 18 17 22 22 C 1.38262 * 119.96904 * 89.99192 * 21 20 18 23 23 C 1.38211 * 120.07004 * 180.02562 * 22 21 20 24 24 C 1.38408 * 120.00200 * 0.02562 * 23 22 21 25 25 F 1.35100 * 120.03517 * 180.02562 * 24 23 22 26 26 C 1.38649 * 119.93207 * 359.97438 * 24 23 22 27 27 F 1.35100 * 120.03676 * 180.02562 * 26 24 23 28 28 C 1.38218 * 119.96202 * 269.72985 * 21 20 18 29 29 C 1.53872 * 110.03250 * 175.00000 * 11 10 9 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 34 34 H 1.09000 * 110.48710 * 335.77929 * 13 11 10 35 35 H 1.08998 * 110.48669 * 98.42673 * 13 11 10 36 36 H 1.09000 * 110.75231 * 279.62777 * 14 13 11 37 37 H 1.09001 * 110.90948 * 156.32891 * 14 13 11 38 38 H 0.97002 * 120.00642 * 89.77500 * 17 15 14 39 39 H 1.09008 * 109.47067 * 299.99510 * 20 18 17 40 40 H 1.08999 * 109.47580 * 59.99340 * 20 18 17 41 41 H 1.07997 * 119.96111 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.99531 * 179.97438 * 23 22 21 43 43 H 1.07994 * 119.99831 * 359.96930 * 28 21 20 44 44 H 1.09000 * 110.03137 * 238.57073 * 29 11 10 45 45 H 1.09000 * 110.03483 * 359.95329 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8720 -1.5260 0.8256 13 6 6.0360 -1.5572 -1.3411 14 6 7.4271 -2.1725 -1.6334 15 6 7.2649 -3.6327 -1.1430 16 1 6.7569 -4.2359 -1.8955 17 7 8.5705 -4.2127 -0.8186 18 6 9.2729 -4.8639 -1.7668 19 8 8.8239 -4.9703 -2.8884 20 6 10.6156 -5.4610 -1.4330 21 6 11.1876 -6.1273 -2.6578 22 6 11.9831 -5.4058 -3.5285 23 6 12.5084 -6.0146 -4.6527 24 6 12.2378 -7.3477 -4.9080 25 9 12.7513 -7.9436 -6.0064 26 6 11.4401 -8.0713 -4.0349 27 9 11.1751 -9.3728 -4.2818 28 6 10.9209 -7.4604 -2.9065 29 6 6.3976 -3.5111 0.1271 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 0.0007 32 1 3.8484 -3.0428 0.8907 33 1 3.8490 -3.0424 -0.8892 34 1 5.3285 -1.8232 -2.1265 35 1 6.1106 -0.4741 -1.2443 36 1 8.2035 -1.6587 -1.0667 37 1 7.6479 -2.1457 -2.7005 38 1 8.9295 -4.1280 0.0785 39 1 11.2910 -4.6730 -1.0998 40 1 10.4982 -6.1986 -0.6391 41 1 12.1936 -4.3652 -3.3305 42 1 13.1293 -5.4497 -5.3323 43 1 10.3033 -8.0242 -2.2231 44 1 7.0332 -3.4856 1.0122 45 1 5.7051 -4.3506 0.1890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717877607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:29 Heat of formation + Delta-G solvation = -102.054597 kcal Electronic energy + Delta-G solvation = -27837.218293 eV Core-core repulsion = 23490.221483 eV Total energy + Delta-G solvation = -4346.996810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.82423 -48.90100 -40.52627 -39.29128 -38.08136 -35.03075 -33.62023 -33.00944 -31.33402 -31.23222 -29.11320 -28.71088 -27.14635 -24.50041 -23.73988 -22.69918 -21.87906 -20.90722 -20.62737 -19.70473 -18.35404 -17.64413 -17.52843 -17.45989 -17.40714 -16.64179 -16.50307 -15.51163 -15.31006 -15.07281 -14.90401 -14.74347 -14.66281 -14.40516 -14.26951 -13.89202 -13.63277 -13.38938 -13.21109 -12.82464 -12.57644 -12.42020 -12.35900 -12.33982 -11.91258 -11.72614 -11.68587 -11.28679 -10.96450 -10.80857 -10.73002 -10.40831 -10.32726 -10.16572 -10.03017 -9.58598 -9.51638 -9.22263 -9.06209 -8.88705 -7.21938 -5.76310 -3.11450 0.43036 0.55332 2.33636 2.68718 3.11052 3.35973 3.36662 3.38977 3.44753 3.87224 3.98858 4.08883 4.43154 4.48843 4.57704 4.59049 4.59677 4.68326 4.77873 4.90908 4.91780 5.25507 5.31903 5.34032 5.41396 5.43153 5.46052 5.48543 5.52870 5.56699 5.70951 5.77697 5.82783 5.90645 5.96627 6.05843 6.13411 6.28345 6.31608 6.40574 6.48688 6.68554 6.80564 7.22400 7.95089 8.00469 8.42940 9.22402 9.94754 10.14897 11.42233 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.001728 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.480496 B =16195.178361 C =16328.452813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.163 3.837 11 C -0.100 4.100 12 H 0.073 0.927 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.138 3.862 16 H 0.097 0.903 17 N -0.722 5.722 18 C 0.512 3.488 19 O -0.529 6.529 20 C -0.104 4.104 21 C -0.046 4.046 22 C -0.085 4.085 23 C -0.123 4.123 24 C 0.066 3.934 25 F -0.130 7.130 26 C 0.070 3.930 27 F -0.129 7.129 28 C -0.112 4.112 29 C -0.120 4.120 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.026 0.974 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.399 0.601 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.227 -12.955 -2.524 33.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.036 3.964 11 C -0.119 4.119 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.171 4.171 15 C 0.034 3.966 16 H 0.115 0.885 17 N -0.373 5.373 18 C 0.297 3.703 19 O -0.405 6.405 20 C -0.144 4.144 21 C -0.047 4.047 22 C -0.103 4.103 23 C -0.142 4.142 24 C 0.045 3.955 25 F -0.108 7.108 26 C 0.050 3.950 27 F -0.107 7.107 28 C -0.130 4.130 29 C -0.159 4.159 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.234 0.766 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.086 0.914 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 30.654 -13.208 -3.395 33.550 hybrid contribution 0.655 0.951 0.196 1.171 sum 31.309 -12.257 -3.199 33.774 Atomic orbital electron populations 1.69709 1.05099 1.25773 1.57717 1.24685 0.95254 0.97217 1.02164 0.86534 0.79233 0.84994 0.77707 1.21148 1.20303 1.21758 1.19073 0.80731 0.94712 1.42783 0.89274 1.42701 1.03983 1.02281 1.91133 1.20780 0.87897 0.89239 0.98515 1.21936 0.96437 0.95553 0.97985 0.90823 1.22365 0.95431 0.99944 0.97564 1.22874 0.98101 0.94904 1.01222 1.21967 0.82366 0.94311 0.97929 0.88534 1.46124 1.20676 1.56792 1.13738 1.20422 0.86295 0.78294 0.85289 1.90771 1.70218 1.58360 1.21147 1.20709 0.95116 1.01803 0.96797 1.19158 0.96632 0.92593 0.96286 1.20941 0.96182 1.00237 0.92990 1.21053 1.01792 0.92196 0.99131 1.17715 0.99429 0.92411 0.85906 1.91533 1.85010 1.83736 1.50552 1.17609 1.01158 0.79538 0.96721 1.91540 1.92428 1.32643 1.94102 1.20917 1.00358 0.95350 0.96414 1.22389 0.98234 0.98953 0.96312 0.93096 0.80691 0.95644 0.95434 0.90601 0.91596 0.91577 0.91417 0.76612 0.87182 0.87305 0.84247 0.83528 0.83717 0.91432 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.76 -17.72 5.25 -59.91 -0.31 -18.04 16 10 C 0.16 3.03 5.32 -4.04 -0.02 3.00 16 11 C -0.10 -1.38 2.96 -89.50 -0.26 -1.65 16 12 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 13 C -0.11 -1.58 6.08 -25.07 -0.15 -1.73 16 14 C -0.13 -1.47 6.58 -24.73 -0.16 -1.63 16 15 C 0.14 1.44 3.22 -66.27 -0.21 1.22 16 16 H 0.10 1.23 7.55 -51.93 -0.39 0.83 16 17 N -0.72 -5.39 5.16 -52.20 -0.27 -5.66 16 18 C 0.51 4.42 7.82 -10.99 -0.09 4.33 16 19 O -0.53 -7.12 15.68 5.55 0.09 -7.03 16 20 C -0.10 -0.48 5.83 -29.04 -0.17 -0.65 16 21 C -0.05 -0.31 4.37 -104.62 -0.46 -0.77 16 22 C -0.09 -0.54 9.70 -39.58 -0.38 -0.92 16 23 C -0.12 -0.86 10.02 -39.53 -0.40 -1.26 16 24 C 0.07 0.60 7.31 -39.37 -0.29 0.32 16 25 F -0.13 -1.34 17.18 2.25 0.04 -1.30 16 26 C 0.07 0.67 7.31 -39.36 -0.29 0.38 16 27 F -0.13 -1.38 17.18 2.25 0.04 -1.34 16 28 C -0.11 -0.87 9.68 -39.52 -0.38 -1.25 16 29 C -0.12 -1.25 6.19 -25.61 -0.16 -1.41 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.36 8.22 5.41 -40.82 -0.22 7.99 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 34 H 0.08 1.17 7.76 -51.93 -0.40 0.77 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 1.74 8.37 -40.82 -0.34 1.40 16 39 H 0.11 0.22 8.08 -51.92 -0.42 -0.20 16 40 H 0.11 0.26 8.08 -51.93 -0.42 -0.16 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.07 0.56 7.73 -51.93 -0.40 0.15 16 45 H 0.08 0.82 7.67 -51.93 -0.40 0.43 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -35.37 381.17 -8.68 -44.05 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.39 Total: 4.08 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.68 Total: -9.11 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.19 Total: -52.43 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.09 Total: -7.03 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.37 -8.68 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717877607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.002 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds