Wall clock time and date at job start Tue Mar 31 2020 21:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.01161 * 53.61216 * 11 10 9 13 13 C 1.54262 * 110.03390 * 292.17070 * 11 10 9 14 14 C 1.54897 * 104.19472 * 217.10213 * 13 11 10 15 15 C 1.54888 * 102.74840 * 37.94282 * 14 13 11 16 16 H 1.09002 * 110.60239 * 80.79079 * 15 14 13 17 17 N 1.46494 * 110.48676 * 203.38158 * 15 14 13 18 18 C 1.34779 * 120.00027 * 269.77366 * 17 15 14 19 19 O 1.21286 * 120.00074 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00295 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.47526 * 180.02562 * 20 18 17 22 22 C 1.38262 * 119.96904 * 89.99192 * 21 20 18 23 23 C 1.38211 * 120.07004 * 180.02562 * 22 21 20 24 24 C 1.38408 * 120.00200 * 0.02562 * 23 22 21 25 25 F 1.35100 * 120.03517 * 180.02562 * 24 23 22 26 26 C 1.38649 * 119.93207 * 359.97438 * 24 23 22 27 27 F 1.35100 * 120.03676 * 180.02562 * 26 24 23 28 28 C 1.38218 * 119.96202 * 269.72985 * 21 20 18 29 29 C 1.53872 * 110.03250 * 175.00000 * 11 10 9 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 33 33 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 34 34 H 1.09000 * 110.48710 * 335.77929 * 13 11 10 35 35 H 1.08998 * 110.48669 * 98.42673 * 13 11 10 36 36 H 1.09000 * 110.75231 * 279.62777 * 14 13 11 37 37 H 1.09001 * 110.90948 * 156.32891 * 14 13 11 38 38 H 0.97002 * 120.00642 * 89.77500 * 17 15 14 39 39 H 1.09008 * 109.47067 * 299.99510 * 20 18 17 40 40 H 1.08999 * 109.47580 * 59.99340 * 20 18 17 41 41 H 1.07997 * 119.96111 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.99531 * 179.97438 * 23 22 21 43 43 H 1.07994 * 119.99831 * 359.96930 * 28 21 20 44 44 H 1.09000 * 110.03137 * 238.57073 * 29 11 10 45 45 H 1.09000 * 110.03483 * 359.95329 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8720 -1.5260 0.8256 13 6 6.0360 -1.5572 -1.3411 14 6 7.4271 -2.1725 -1.6334 15 6 7.2649 -3.6327 -1.1430 16 1 6.7569 -4.2359 -1.8955 17 7 8.5705 -4.2127 -0.8186 18 6 9.2729 -4.8639 -1.7668 19 8 8.8239 -4.9703 -2.8884 20 6 10.6156 -5.4610 -1.4330 21 6 11.1876 -6.1273 -2.6578 22 6 11.9831 -5.4058 -3.5285 23 6 12.5084 -6.0146 -4.6527 24 6 12.2378 -7.3477 -4.9080 25 9 12.7513 -7.9436 -6.0064 26 6 11.4401 -8.0713 -4.0349 27 9 11.1751 -9.3728 -4.2818 28 6 10.9209 -7.4604 -2.9065 29 6 6.3976 -3.5111 0.1271 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 0.0007 32 1 3.8484 -3.0428 0.8907 33 1 3.8490 -3.0424 -0.8892 34 1 5.3285 -1.8232 -2.1265 35 1 6.1106 -0.4741 -1.2443 36 1 8.2035 -1.6587 -1.0667 37 1 7.6479 -2.1457 -2.7005 38 1 8.9295 -4.1280 0.0785 39 1 11.2910 -4.6730 -1.0998 40 1 10.4982 -6.1986 -0.6391 41 1 12.1936 -4.3652 -3.3305 42 1 13.1293 -5.4497 -5.3323 43 1 10.3033 -8.0242 -2.2231 44 1 7.0332 -3.4856 1.0122 45 1 5.7051 -4.3506 0.1890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717877607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:28 Heat of formation + Delta-G solvation = -125.205311 kcal Electronic energy + Delta-G solvation = -27838.222183 eV Core-core repulsion = 23490.221483 eV Total energy + Delta-G solvation = -4348.000700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.53877 -49.62717 -41.18900 -39.98656 -39.01088 -36.55684 -34.77763 -33.69156 -33.13643 -31.81020 -30.38168 -29.51768 -27.97334 -26.03834 -24.29327 -23.68811 -23.33755 -21.69111 -21.37533 -20.92923 -19.51586 -19.00489 -18.24933 -18.10405 -18.03173 -17.37134 -17.28225 -16.62575 -16.21165 -16.14665 -16.05746 -15.57784 -15.54880 -15.35110 -15.01515 -14.94126 -14.76256 -14.62285 -14.28960 -14.04424 -13.89037 -13.48488 -13.15166 -12.92583 -12.86850 -12.83860 -12.68045 -12.33981 -12.23885 -12.15025 -11.97865 -11.81756 -11.71667 -11.60844 -11.34096 -10.95241 -10.89218 -10.07076 -9.96035 -9.66170 -9.28346 -8.02781 -5.36066 -0.15333 0.01195 1.37309 1.42002 1.49451 1.72744 2.10310 2.48854 2.54360 2.78692 3.27735 3.28276 3.47401 3.54469 3.60732 3.62989 3.87281 3.94381 3.99823 4.07853 4.12082 4.41796 4.44939 4.52018 4.54743 4.62756 4.65557 4.69105 4.74715 4.76994 4.86187 4.91404 4.95562 5.03056 5.06487 5.11238 5.16010 5.28583 5.33544 5.39291 5.54282 5.65913 5.73715 5.75857 6.21466 6.68126 7.08717 7.38822 7.85388 8.05381 9.18941 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.001728 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.480496 B =16195.178361 C =16328.452813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.249 1.249 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.052 0.948 9 N -0.756 5.756 10 C 0.157 3.843 11 C -0.091 4.091 12 H 0.086 0.914 13 C -0.118 4.118 14 C -0.120 4.120 15 C 0.144 3.856 16 H 0.066 0.934 17 N -0.707 5.707 18 C 0.510 3.490 19 O -0.584 6.584 20 C -0.094 4.094 21 C -0.050 4.050 22 C -0.082 4.082 23 C -0.123 4.123 24 C 0.041 3.959 25 F -0.144 7.144 26 C 0.042 3.958 27 F -0.145 7.145 28 C -0.117 4.117 29 C -0.110 4.110 30 H 0.258 0.742 31 H 0.367 0.633 32 H 0.025 0.975 33 H 0.014 0.986 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.420 0.580 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.104 0.896 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.818 -11.369 -0.578 36.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.260 4.260 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.173 1.173 6 H -0.224 1.224 7 C -0.368 4.368 8 H 0.070 0.930 9 N -0.402 5.402 10 C 0.031 3.969 11 C -0.110 4.110 12 H 0.104 0.896 13 C -0.156 4.156 14 C -0.158 4.158 15 C 0.039 3.961 16 H 0.085 0.915 17 N -0.359 5.359 18 C 0.297 3.703 19 O -0.464 6.464 20 C -0.133 4.133 21 C -0.050 4.050 22 C -0.100 4.100 23 C -0.141 4.141 24 C 0.021 3.979 25 F -0.123 7.123 26 C 0.022 3.978 27 F -0.123 7.123 28 C -0.136 4.136 29 C -0.148 4.148 30 H 0.066 0.934 31 H 0.200 0.800 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.258 0.742 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.175 0.825 44 H 0.122 0.878 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 34.314 -11.652 -1.406 36.265 hybrid contribution -0.530 0.373 -0.413 0.768 sum 33.783 -11.280 -1.818 35.663 Atomic orbital electron populations 1.69907 1.07260 1.26718 1.59746 1.25590 0.96209 1.01550 1.02620 0.85348 0.78675 0.79144 0.78281 1.20026 1.17340 1.22418 1.19057 0.83019 0.93370 1.41327 0.92984 1.42696 1.02289 1.04357 1.90866 1.20990 0.91053 0.87152 0.97668 1.21852 0.92931 0.97785 0.98423 0.89602 1.22332 0.96567 1.00053 0.96685 1.22768 0.96940 0.95207 1.00924 1.21637 0.83707 0.93633 0.97137 0.91533 1.45916 1.19324 1.55970 1.14716 1.21117 0.87309 0.77422 0.84409 1.90769 1.71720 1.60373 1.23542 1.20796 0.92920 1.03302 0.96327 1.19512 0.96190 0.92124 0.97208 1.21367 0.95103 1.01449 0.92118 1.21367 1.01666 0.91260 0.99814 1.18073 1.00409 0.93534 0.85929 1.91487 1.85334 1.84148 1.51284 1.17971 1.02570 0.79251 0.98039 1.91487 1.92729 1.33763 1.94354 1.21168 1.00214 0.96235 0.95981 1.22298 0.98199 0.96581 0.97723 0.93365 0.79959 0.95684 0.96751 0.93373 0.91691 0.89089 0.92648 0.74170 0.83332 0.84336 0.81331 0.81498 0.82549 0.87798 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.92 13.97 21.65 0.30 -63.61 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.96 45.23 27.74 68.60 1.90 47.13 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.25 -10.46 6.52 99.48 0.65 -9.82 16 6 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 7 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 N -0.76 -35.04 5.25 -343.45 -1.80 -36.84 16 10 C 0.16 5.77 5.32 86.38 0.46 6.23 16 11 C -0.09 -2.29 2.96 -10.07 -0.03 -2.32 16 12 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 13 C -0.12 -3.04 6.08 31.67 0.19 -2.84 16 14 C -0.12 -2.34 6.58 31.89 0.21 -2.13 16 15 C 0.14 2.63 3.22 46.07 0.15 2.78 16 16 H 0.07 1.66 7.55 -2.39 -0.02 1.64 16 17 N -0.71 -7.67 5.16 -437.45 -2.26 -9.93 16 18 C 0.51 7.11 7.82 87.66 0.69 7.79 16 19 O -0.58 -14.90 15.68 -3.05 -0.05 -14.95 16 20 C -0.09 -0.43 5.83 29.10 0.17 -0.26 16 21 C -0.05 -0.53 4.37 -19.86 -0.09 -0.62 16 22 C -0.08 -0.80 9.70 22.27 0.22 -0.59 16 23 C -0.12 -1.54 10.02 22.30 0.22 -1.32 16 24 C 0.04 0.76 7.31 22.41 0.16 0.92 16 25 F -0.14 -3.12 17.18 44.97 0.77 -2.35 16 26 C 0.04 0.81 7.31 22.41 0.16 0.98 16 27 F -0.14 -3.31 17.18 44.97 0.77 -2.53 16 28 C -0.12 -1.71 9.68 22.31 0.22 -1.49 16 29 C -0.11 -1.93 6.19 31.32 0.19 -1.73 16 30 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 31 H 0.37 15.96 5.41 -92.71 -0.50 15.46 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.01 0.57 8.00 -2.38 -0.02 0.55 16 34 H 0.05 1.49 7.76 -2.39 -0.02 1.47 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.42 1.24 8.37 -92.71 -0.78 0.47 16 39 H 0.15 -0.38 8.08 -2.38 -0.02 -0.40 16 40 H 0.14 -0.11 8.08 -2.39 -0.02 -0.13 16 41 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.10 1.14 7.73 -2.39 -0.02 1.12 16 45 H 0.07 1.36 7.67 -2.39 -0.02 1.34 16 Total: -1.00 -82.24 381.17 3.61 -78.64 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.31 Total: 15.47 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.27 Total: -11.03 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.76 Total: -110.38 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.05 Total: -14.95 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 1.55 Total: -4.88 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Total: -82.24 3.61 -78.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717877607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.569 kcal (2) G-P(sol) polarization free energy of solvation -82.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds