Wall clock time and date at job start Tue Mar 31 2020 21:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47130 * 299.99890 * 3 2 1 6 6 H 1.48500 * 109.47197 * 59.99835 * 3 2 1 7 7 C 1.38816 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00022 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00267 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47557 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46407 * 294.99895 * 11 10 9 13 13 N 1.46495 * 109.47112 * 54.99577 * 11 10 9 14 14 C 1.34777 * 119.99936 * 244.86280 * 13 11 10 15 15 O 1.21551 * 120.00347 * 354.98781 * 14 13 11 16 16 C 1.47866 * 119.99828 * 175.26479 * 14 13 11 17 17 C 1.39541 * 120.12008 * 359.45117 * 16 14 13 18 18 C 1.38210 * 119.87585 * 179.74204 * 17 16 14 19 19 F 1.35102 * 119.94098 * 180.25034 * 18 17 16 20 20 C 1.38527 * 120.11968 * 0.53125 * 18 17 16 21 21 C 1.38535 * 120.24666 * 359.72158 * 20 18 17 22 22 F 1.35094 * 119.94304 * 180.02562 * 21 20 18 23 23 C 1.38208 * 120.11644 * 0.02562 * 21 20 18 24 24 C 1.53002 * 109.47254 * 174.99820 * 11 10 9 25 25 C 1.54264 * 110.03088 * 297.08746 * 24 11 10 26 26 C 1.54968 * 104.15970 * 217.13739 * 25 24 11 27 27 C 1.54893 * 102.77638 * 37.88702 * 26 25 24 28 28 C 1.53872 * 110.02973 * 179.87210 * 24 11 10 29 29 H 0.96999 * 119.99696 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99649 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47386 * 59.99535 * 10 9 7 32 32 H 1.09008 * 109.47120 * 300.00105 * 10 9 7 33 33 H 0.96998 * 120.00219 * 64.86388 * 13 11 10 34 34 H 1.08004 * 120.06343 * 359.97438 * 17 16 14 35 35 H 1.08004 * 119.87887 * 179.74311 * 20 18 17 36 36 H 1.08000 * 120.05945 * 179.97438 * 23 21 20 37 37 H 1.08997 * 110.01335 * 58.48070 * 24 11 10 38 38 H 1.09005 * 110.49015 * 335.78193 * 25 24 11 39 39 H 1.09002 * 110.48617 * 98.42687 * 25 24 11 40 40 H 1.08996 * 110.71943 * 279.57882 * 26 25 24 41 41 H 1.08995 * 110.76772 * 156.22301 * 26 25 24 42 42 H 1.08993 * 110.48874 * 203.40129 * 27 26 25 43 43 H 1.09009 * 110.59714 * 80.81787 * 27 26 25 44 44 H 1.09004 * 110.03200 * 238.56987 * 28 24 11 45 45 H 1.09009 * 110.03386 * 359.94743 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 6 1.0638 -4.8197 0.0031 12 1 0.4974 -4.8130 0.9343 13 7 0.1448 -4.6768 -1.1287 14 6 -1.1679 -4.4651 -0.9082 15 8 -1.6044 -4.4834 0.2261 16 6 -2.0781 -4.2166 -2.0467 17 6 -1.5787 -4.1894 -3.3494 18 6 -2.4349 -3.9620 -4.4103 19 9 -1.9537 -3.9404 -5.6725 20 6 -3.7846 -3.7503 -4.1813 21 6 -4.2849 -3.7710 -2.8896 22 9 -5.6023 -3.5644 -2.6733 23 6 -3.4386 -4.0027 -1.8218 24 6 1.8248 -6.1413 -0.1215 25 6 2.5734 -6.1949 -1.4692 26 6 2.4536 -7.6755 -1.9107 27 6 1.0181 -8.0505 -1.4660 28 6 0.8365 -7.3207 -0.1191 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0016 31 1 2.6848 -3.7137 0.8927 32 1 2.6848 -3.7153 -0.8873 33 1 0.4809 -4.7346 -2.0367 34 1 -0.5258 -4.3494 -3.5287 35 1 -4.4495 -3.5689 -5.0128 36 1 -3.8295 -4.0183 -0.8151 37 1 2.5310 -6.2442 0.7024 38 1 2.0953 -5.5399 -2.1976 39 1 3.6195 -5.9192 -1.3357 40 1 3.1907 -8.2921 -1.3964 41 1 2.5592 -7.7662 -2.9917 42 1 0.9299 -9.1284 -1.3308 43 1 0.2868 -7.6971 -2.1930 44 1 1.0637 -7.9965 0.7054 45 1 -0.1852 -6.9516 -0.0283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724108708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:24 Heat of formation + Delta-G solvation = -98.433326 kcal Electronic energy + Delta-G solvation = -30070.778078 eV Core-core repulsion = 25723.938299 eV Total energy + Delta-G solvation = -4346.839780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.14232 -49.10571 -40.37528 -38.82108 -37.56044 -35.24613 -33.59221 -31.91908 -30.83854 -30.39158 -29.56502 -28.72944 -26.30990 -24.63501 -23.27648 -22.85923 -21.58379 -21.05122 -20.19398 -19.31081 -18.58724 -17.34743 -17.14196 -16.62051 -16.38427 -16.13197 -15.99814 -15.74751 -15.46073 -15.42064 -14.81245 -14.57157 -14.47395 -14.34032 -13.77255 -13.47204 -13.28446 -13.24974 -12.85186 -12.78281 -12.20363 -12.09412 -11.95419 -11.91430 -11.74024 -11.18676 -11.09875 -11.04578 -10.84459 -10.69889 -10.62558 -10.50185 -10.37260 -10.03367 -9.78739 -9.71421 -9.25582 -8.92297 -8.87967 -8.68530 -6.90706 -5.73922 -3.03453 0.47885 0.82266 2.71591 3.18604 3.43522 3.48782 3.51411 3.65788 3.72277 4.17415 4.42710 4.52790 4.59107 4.61236 4.65267 4.74944 4.84909 4.88857 5.21170 5.33404 5.43225 5.45431 5.57017 5.58633 5.58823 5.63930 5.67073 5.71338 5.79733 5.83596 5.88501 5.92590 5.96509 6.03455 6.10594 6.21386 6.26860 6.31876 6.42440 6.46377 6.54276 6.66881 6.90254 7.68991 7.71587 8.41103 8.43602 9.55261 10.13177 10.47933 11.48125 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.006706 B = 0.005173 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4174.082266 B = 5411.482100 C = 8044.808131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.141 3.859 11 C 0.137 3.863 12 H 0.103 0.897 13 N -0.699 5.699 14 C 0.565 3.435 15 O -0.525 6.525 16 C -0.061 4.061 17 C -0.128 4.128 18 C 0.125 3.875 19 F -0.129 7.129 20 C -0.173 4.173 21 C 0.124 3.876 22 F -0.128 7.128 23 C -0.103 4.103 24 C -0.098 4.098 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.119 4.119 29 H 0.254 0.746 30 H 0.386 0.614 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.396 0.604 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 -16.596 -8.447 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.013 3.987 11 C 0.032 3.968 12 H 0.121 0.879 13 N -0.350 5.350 14 C 0.351 3.649 15 O -0.402 6.402 16 C -0.065 4.065 17 C -0.148 4.148 18 C 0.105 3.895 19 F -0.108 7.108 20 C -0.193 4.193 21 C 0.105 3.895 22 F -0.107 7.107 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.160 4.160 28 C -0.157 4.157 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.233 0.767 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.175 0.825 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.857 -16.460 -7.644 18.372 hybrid contribution 0.194 1.231 -0.713 1.435 sum -2.664 -15.230 -8.356 17.575 Atomic orbital electron populations 1.69689 1.05043 1.25441 1.57447 1.24746 0.95477 0.97622 1.03003 0.86156 0.78753 0.84319 0.77175 1.20604 1.21946 1.21877 1.19236 0.90955 0.84133 1.42901 0.91216 1.42307 1.06007 0.99658 1.89383 1.21053 0.93225 0.85894 0.98545 1.21427 0.90843 0.94029 0.90459 0.87895 1.45711 1.06796 1.72251 1.10281 1.17822 0.82336 0.76790 0.87967 1.90799 1.76120 1.50514 1.22725 1.19630 0.93640 1.00307 0.92889 1.21334 1.00684 1.01674 0.91090 1.17031 0.91351 1.01672 0.79443 1.91548 1.88365 1.93860 1.36987 1.21144 0.95235 1.05567 0.97375 1.17072 0.78427 1.01217 0.92820 1.91545 1.31402 1.92239 1.95486 1.21307 0.92198 0.98665 1.00104 1.22095 0.97018 0.94085 0.98584 1.22438 1.00493 0.96159 0.96529 1.22515 0.96834 0.96502 1.00359 1.22331 0.96881 0.99545 0.97226 1.22164 0.99945 0.96370 0.97175 0.93601 0.78004 0.95371 0.95868 0.76740 0.83703 0.83155 0.82535 0.89758 0.91701 0.91252 0.91674 0.91878 0.92191 0.91953 0.92105 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.26 5.43 -59.91 -0.33 -18.58 16 10 C 0.14 2.70 5.84 -4.04 -0.02 2.67 16 11 C 0.14 2.13 2.04 -67.93 -0.14 1.99 16 12 H 0.10 1.86 6.91 -51.93 -0.36 1.50 16 13 N -0.70 -10.34 3.70 -54.74 -0.20 -10.54 16 14 C 0.56 9.49 6.88 -12.32 -0.08 9.40 16 15 O -0.52 -10.55 15.68 5.32 0.08 -10.47 16 16 C -0.06 -0.89 5.87 -104.98 -0.62 -1.51 16 17 C -0.13 -1.61 9.51 -39.11 -0.37 -1.98 16 18 C 0.12 1.50 7.29 -39.49 -0.29 1.21 16 19 F -0.13 -1.55 17.26 2.25 0.04 -1.51 16 20 C -0.17 -1.97 10.00 -39.37 -0.39 -2.36 16 21 C 0.12 1.57 7.29 -39.48 -0.29 1.29 16 22 F -0.13 -1.63 17.26 2.25 0.04 -1.59 16 23 C -0.10 -1.46 9.57 -39.10 -0.37 -1.83 16 24 C -0.10 -1.15 2.81 -89.50 -0.25 -1.41 16 25 C -0.12 -1.23 5.13 -25.03 -0.13 -1.36 16 26 C -0.12 -1.10 6.91 -24.69 -0.17 -1.27 16 27 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 28 C -0.12 -1.30 6.19 -25.62 -0.16 -1.46 16 29 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.39 10.45 6.80 -40.82 -0.28 10.17 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.43 7.13 -51.92 -0.37 0.06 16 33 H 0.40 5.03 5.01 -40.82 -0.20 4.82 16 34 H 0.15 1.56 6.42 -52.48 -0.34 1.22 16 35 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.16 2.25 7.65 -52.49 -0.40 1.85 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.69 5.96 -51.93 -0.31 0.38 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.87 7.12 -51.92 -0.37 0.50 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -32.27 373.26 -8.73 -41.00 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.98 Total: 11.53 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -3.71 Total: -5.26 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.20 Total: -56.85 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.27 -8.73 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724108708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.438 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds