Wall clock time and date at job start Tue Mar 31 2020 21:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47130 * 299.99890 * 3 2 1 6 6 H 1.48500 * 109.47197 * 59.99835 * 3 2 1 7 7 C 1.38816 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00022 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00267 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47557 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46407 * 294.99895 * 11 10 9 13 13 N 1.46495 * 109.47112 * 54.99577 * 11 10 9 14 14 C 1.34777 * 119.99936 * 244.86280 * 13 11 10 15 15 O 1.21551 * 120.00347 * 354.98781 * 14 13 11 16 16 C 1.47866 * 119.99828 * 175.26479 * 14 13 11 17 17 C 1.39541 * 120.12008 * 359.45117 * 16 14 13 18 18 C 1.38210 * 119.87585 * 179.74204 * 17 16 14 19 19 F 1.35102 * 119.94098 * 180.25034 * 18 17 16 20 20 C 1.38527 * 120.11968 * 0.53125 * 18 17 16 21 21 C 1.38535 * 120.24666 * 359.72158 * 20 18 17 22 22 F 1.35094 * 119.94304 * 180.02562 * 21 20 18 23 23 C 1.38208 * 120.11644 * 0.02562 * 21 20 18 24 24 C 1.53002 * 109.47254 * 174.99820 * 11 10 9 25 25 C 1.54264 * 110.03088 * 297.08746 * 24 11 10 26 26 C 1.54968 * 104.15970 * 217.13739 * 25 24 11 27 27 C 1.54893 * 102.77638 * 37.88702 * 26 25 24 28 28 C 1.53872 * 110.02973 * 179.87210 * 24 11 10 29 29 H 0.96999 * 119.99696 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99649 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47386 * 59.99535 * 10 9 7 32 32 H 1.09008 * 109.47120 * 300.00105 * 10 9 7 33 33 H 0.96998 * 120.00219 * 64.86388 * 13 11 10 34 34 H 1.08004 * 120.06343 * 359.97438 * 17 16 14 35 35 H 1.08004 * 119.87887 * 179.74311 * 20 18 17 36 36 H 1.08000 * 120.05945 * 179.97438 * 23 21 20 37 37 H 1.08997 * 110.01335 * 58.48070 * 24 11 10 38 38 H 1.09005 * 110.49015 * 335.78193 * 25 24 11 39 39 H 1.09002 * 110.48617 * 98.42687 * 25 24 11 40 40 H 1.08996 * 110.71943 * 279.57882 * 26 25 24 41 41 H 1.08995 * 110.76772 * 156.22301 * 26 25 24 42 42 H 1.08993 * 110.48874 * 203.40129 * 27 26 25 43 43 H 1.09009 * 110.59714 * 80.81787 * 27 26 25 44 44 H 1.09004 * 110.03200 * 238.56987 * 28 24 11 45 45 H 1.09009 * 110.03386 * 359.94743 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 6 1.0638 -4.8197 0.0031 12 1 0.4974 -4.8130 0.9343 13 7 0.1448 -4.6768 -1.1287 14 6 -1.1679 -4.4651 -0.9082 15 8 -1.6044 -4.4834 0.2261 16 6 -2.0781 -4.2166 -2.0467 17 6 -1.5787 -4.1894 -3.3494 18 6 -2.4349 -3.9620 -4.4103 19 9 -1.9537 -3.9404 -5.6725 20 6 -3.7846 -3.7503 -4.1813 21 6 -4.2849 -3.7710 -2.8896 22 9 -5.6023 -3.5644 -2.6733 23 6 -3.4386 -4.0027 -1.8218 24 6 1.8248 -6.1413 -0.1215 25 6 2.5734 -6.1949 -1.4692 26 6 2.4536 -7.6755 -1.9107 27 6 1.0181 -8.0505 -1.4660 28 6 0.8365 -7.3207 -0.1191 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0016 31 1 2.6848 -3.7137 0.8927 32 1 2.6848 -3.7153 -0.8873 33 1 0.4809 -4.7346 -2.0367 34 1 -0.5258 -4.3494 -3.5287 35 1 -4.4495 -3.5689 -5.0128 36 1 -3.8295 -4.0183 -0.8151 37 1 2.5310 -6.2442 0.7024 38 1 2.0953 -5.5399 -2.1976 39 1 3.6195 -5.9192 -1.3357 40 1 3.1907 -8.2921 -1.3964 41 1 2.5592 -7.7662 -2.9917 42 1 0.9299 -9.1284 -1.3308 43 1 0.2868 -7.6971 -2.1930 44 1 1.0637 -7.9965 0.7054 45 1 -0.1852 -6.9516 -0.0283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724108708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:23 Heat of formation + Delta-G solvation = -116.875592 kcal Electronic energy + Delta-G solvation = -30071.577795 eV Core-core repulsion = 25723.938299 eV Total energy + Delta-G solvation = -4347.639496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.13263 -50.10085 -41.60469 -39.85484 -38.70057 -36.77679 -35.22379 -33.38969 -32.28996 -31.54542 -30.78316 -29.57699 -27.77324 -25.92169 -24.91656 -23.95450 -22.92238 -22.19828 -21.13720 -20.42413 -19.70395 -19.16332 -18.36628 -17.67208 -17.46386 -17.17331 -17.12832 -16.81747 -16.57419 -16.45778 -16.41058 -15.96950 -15.58505 -15.41920 -15.16449 -15.09227 -14.95889 -14.15594 -14.04842 -13.87181 -13.69344 -13.19434 -13.08884 -13.03064 -12.99365 -12.94166 -12.79330 -12.12323 -11.99521 -11.89108 -11.82960 -11.66183 -11.53178 -11.45310 -11.36966 -11.15566 -10.92578 -10.33200 -9.97584 -9.95480 -8.98198 -7.92907 -5.22236 -0.58621 -0.21032 1.46068 1.47128 1.55603 1.56971 1.98141 2.47603 2.55653 2.69633 3.13728 3.38337 3.41126 3.56782 3.60140 3.74296 3.82317 3.84126 3.86745 4.16164 4.25159 4.29738 4.43071 4.56575 4.58074 4.63042 4.69505 4.72317 4.79597 4.80137 4.89079 4.89741 4.91264 4.92294 5.09086 5.15979 5.18380 5.32980 5.39047 5.46283 5.51591 5.52609 5.56159 5.60185 6.27159 6.45979 7.14398 7.34252 8.11100 8.33204 9.30122 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.006706 B = 0.005173 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4174.082266 B = 5411.482100 C = 8044.808131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.240 4.240 8 H 0.079 0.921 9 N -0.743 5.743 10 C 0.139 3.861 11 C 0.147 3.853 12 H 0.072 0.928 13 N -0.687 5.687 14 C 0.560 3.440 15 O -0.570 6.570 16 C -0.080 4.080 17 C -0.122 4.122 18 C 0.126 3.874 19 F -0.124 7.124 20 C -0.155 4.155 21 C 0.122 3.878 22 F -0.129 7.129 23 C -0.116 4.116 24 C -0.091 4.091 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.117 4.117 29 H 0.248 0.752 30 H 0.372 0.628 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.408 0.592 34 H 0.162 0.838 35 H 0.181 0.819 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -17.605 -10.544 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.226 1.226 7 C -0.372 4.372 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.012 3.988 11 C 0.042 3.958 12 H 0.090 0.910 13 N -0.338 5.338 14 C 0.348 3.652 15 O -0.450 6.450 16 C -0.084 4.084 17 C -0.141 4.141 18 C 0.107 3.893 19 F -0.103 7.103 20 C -0.175 4.175 21 C 0.102 3.898 22 F -0.107 7.107 23 C -0.135 4.135 24 C -0.110 4.110 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.157 4.157 28 C -0.154 4.154 29 H 0.057 0.943 30 H 0.204 0.796 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.247 0.753 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.162 0.838 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.227 -17.513 -9.771 20.092 hybrid contribution -0.281 1.484 -0.055 1.511 sum -1.509 -16.030 -9.826 18.862 Atomic orbital electron populations 1.69866 1.06700 1.25699 1.59633 1.25562 0.96267 1.01077 1.03949 0.85102 0.78381 0.79994 0.76449 1.18733 1.22125 1.22555 1.19672 0.91521 0.85210 1.40793 0.90305 1.42536 1.05628 1.01090 1.89311 1.21264 0.93785 0.84687 0.99046 1.21236 0.90078 0.94896 0.89594 0.90979 1.45603 1.06190 1.71332 1.10721 1.18213 0.83025 0.75969 0.88035 1.90766 1.76942 1.52680 1.24584 1.19458 0.93435 1.02453 0.93014 1.21454 1.01713 1.00658 0.90300 1.16991 0.91473 1.01487 0.79378 1.91566 1.88340 1.93798 1.36546 1.21399 0.95393 1.03241 0.97459 1.17028 0.78242 1.01511 0.92974 1.91545 1.31325 1.92278 1.95544 1.21308 0.92585 0.99401 1.00252 1.22057 0.96977 0.91885 1.00120 1.22457 1.00397 0.97571 0.95237 1.22478 0.96439 0.95094 1.01302 1.22322 0.97386 1.00060 0.95893 1.22124 0.98202 0.96261 0.98858 0.94311 0.79600 0.95252 0.94038 0.75350 0.82017 0.80167 0.83849 0.88981 0.92013 0.90673 0.90678 0.90522 0.90922 0.92122 0.91231 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.76 13.06 21.65 0.28 -60.48 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.74 -37.68 5.43 -343.46 -1.87 -39.54 16 10 C 0.14 5.27 5.84 86.38 0.50 5.77 16 11 C 0.15 4.63 2.04 44.99 0.09 4.72 16 12 H 0.07 2.76 6.91 -2.39 -0.02 2.74 16 13 N -0.69 -20.63 3.70 -445.39 -1.65 -22.28 16 14 C 0.56 19.72 6.88 86.79 0.60 20.32 16 15 O -0.57 -24.60 15.68 -3.88 -0.06 -24.66 16 16 C -0.08 -2.40 5.87 -20.10 -0.12 -2.52 16 17 C -0.12 -2.95 9.51 22.58 0.21 -2.73 16 18 C 0.13 2.79 7.29 22.33 0.16 2.95 16 19 F -0.12 -2.64 17.26 44.97 0.78 -1.86 16 20 C -0.16 -3.22 10.00 22.41 0.22 -2.99 16 21 C 0.12 3.04 7.29 22.33 0.16 3.20 16 22 F -0.13 -3.21 17.26 44.97 0.78 -2.43 16 23 C -0.12 -3.40 9.57 22.58 0.22 -3.19 16 24 C -0.09 -2.04 2.81 -10.07 -0.03 -2.07 16 25 C -0.12 -2.19 5.13 31.70 0.16 -2.02 16 26 C -0.12 -1.68 6.91 31.91 0.22 -1.46 16 27 C -0.12 -1.96 6.83 31.67 0.22 -1.75 16 28 C -0.12 -2.46 6.19 31.32 0.19 -2.27 16 29 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.37 20.83 6.80 -92.70 -0.63 20.20 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 1.45 7.13 -2.38 -0.02 1.43 16 33 H 0.41 10.08 5.01 -92.71 -0.46 9.62 16 34 H 0.16 3.22 6.42 -2.91 -0.02 3.20 16 35 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.14 4.50 7.65 -2.91 -0.02 4.48 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.17 5.96 -2.38 -0.01 1.16 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.04 1.15 7.12 -2.38 -0.02 1.13 16 Total: -1.00 -70.96 373.26 4.36 -66.60 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -0.05 Total: 36.54 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 4.13 Total: -0.51 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -3.23 Total: -122.30 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.06 Total: -24.66 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 1.55 Total: -4.29 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -70.96 4.36 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724108708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.280 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds