Wall clock time and date at job start Tue Mar 31 2020 21:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38212 * 119.99668 * 2 1 4 4 C 1.38436 * 119.99425 * 179.76860 * 3 2 1 5 5 F 1.35101 * 119.99569 * 180.24989 * 4 3 2 6 6 C 1.38466 * 120.00006 * 0.47892 * 4 3 2 7 7 C 1.50701 * 119.99673 * 179.74637 * 6 4 3 8 8 C 1.50698 * 109.47395 * 279.72666 * 7 6 4 9 9 O 1.21285 * 119.99560 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00443 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99444 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99914 * 179.97438 * 10 8 7 13 13 H 1.08999 * 110.64376 * 1.69162 * 12 10 8 14 14 C 1.55161 * 110.87067 * 124.94100 * 12 10 8 15 15 C 1.55120 * 101.48786 * 82.76345 * 14 12 10 16 16 N 1.47424 * 104.72214 * 37.29539 * 15 14 12 17 17 C 1.36942 * 125.64678 * 155.81719 * 16 15 14 18 18 H 1.07993 * 119.99892 * 199.23821 * 17 16 15 19 19 C 1.38814 * 120.00134 * 19.23561 * 17 16 15 20 20 N 1.31623 * 119.99620 * 28.47837 * 19 17 16 21 21 Si 1.86802 * 119.99976 * 208.47823 * 19 17 16 22 22 H 1.48505 * 109.46818 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46897 * 60.00222 * 21 19 17 24 24 H 1.48493 * 109.46888 * 299.99831 * 21 19 17 25 25 C 1.47018 * 108.70331 * 335.55374 * 16 15 14 26 26 C 1.38164 * 120.00108 * 359.47348 * 6 4 3 27 27 C 1.38426 * 120.00245 * 179.97438 * 2 1 3 28 28 F 1.35102 * 119.99939 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47387 * 270.02800 * 1 2 3 30 30 H 1.09006 * 109.47379 * 30.02799 * 1 2 3 31 31 H 1.08995 * 109.47062 * 150.02286 * 1 2 3 32 32 H 1.07996 * 120.00271 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46932 * 159.72986 * 7 6 4 34 34 H 1.08998 * 109.47269 * 39.73173 * 7 6 4 35 35 H 1.08998 * 109.47381 * 269.99287 * 11 10 8 36 36 H 1.08995 * 109.47735 * 30.00099 * 11 10 8 37 37 H 1.09005 * 109.47097 * 150.00229 * 11 10 8 38 38 H 1.08998 * 111.00378 * 201.00910 * 14 12 10 39 39 H 1.09003 * 110.99875 * 324.85496 * 14 12 10 40 40 H 1.09006 * 110.49706 * 278.45382 * 15 14 12 41 41 H 1.09003 * 110.34628 * 156.06380 * 15 14 12 42 42 H 0.97001 * 120.00433 * 5.66772 * 20 19 17 43 43 H 1.09004 * 109.88014 * 120.70552 * 25 16 15 44 44 H 1.08998 * 109.87933 * 241.71224 * 25 16 15 45 45 H 1.07998 * 119.99639 * 180.27778 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1970 0.0000 4 6 3.5823 1.1969 0.0048 5 9 4.2578 2.3670 0.0099 6 6 4.2746 -0.0022 -0.0003 7 6 5.7816 -0.0022 -0.0008 8 6 6.2835 0.2437 -1.4004 9 8 5.4951 0.4027 -2.3081 10 7 7.6085 0.2858 -1.6435 11 6 8.5608 0.0921 -0.5473 12 6 8.0963 0.5243 -3.0041 13 1 7.2629 0.6754 -3.6902 14 6 9.0638 1.7368 -3.0400 15 6 10.3990 1.0797 -2.6023 16 7 10.3840 -0.2538 -3.2307 17 6 11.4875 -1.0075 -3.5300 18 1 11.4152 -1.8079 -4.2514 19 6 12.6990 -0.7425 -2.9064 20 7 12.7169 -0.2167 -1.6999 21 14 14.3038 -1.1322 -3.7794 22 1 15.4456 -0.7577 -2.9068 23 1 14.3771 -0.3626 -5.0472 24 1 14.3645 -2.5855 -4.0782 25 6 8.9879 -0.6432 -3.4769 26 6 3.5838 -1.1988 0.0007 27 6 2.1992 -1.1988 0.0005 28 9 1.5237 -2.3688 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6580 2.1323 -0.0004 33 1 6.1451 -0.9677 0.3511 34 1 6.1452 0.7854 0.6591 35 1 8.7976 1.0561 -0.0970 36 1 8.1205 -0.5620 0.2053 37 1 9.4731 -0.3619 -0.9344 38 1 9.1381 2.1476 -4.0468 39 1 8.7559 2.5033 -2.3287 40 1 10.4412 0.9872 -1.5170 41 1 11.2454 1.6616 -2.9673 42 1 11.8872 -0.0904 -1.2134 43 1 8.8345 -0.8193 -4.5417 44 1 8.7501 -1.5459 -2.9141 45 1 4.1239 -2.1340 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033288021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:00 Heat of formation + Delta-G solvation = -71.998727 kcal Electronic energy + Delta-G solvation = -29588.433159 eV Core-core repulsion = 25242.739669 eV Total energy + Delta-G solvation = -4345.693489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.17545 -49.10004 -40.26882 -39.17502 -37.61630 -34.58156 -34.17623 -32.36288 -30.46394 -30.22632 -29.10450 -28.19320 -26.40951 -25.67084 -24.10282 -23.39049 -21.98859 -20.69459 -20.26837 -18.76284 -17.73254 -17.60924 -17.42418 -17.31889 -17.12874 -16.19167 -15.83340 -15.48421 -15.39401 -14.68490 -14.58588 -14.48825 -14.06628 -13.78534 -13.68763 -13.57813 -13.37775 -13.35375 -13.11138 -12.88825 -12.63165 -12.32589 -12.19596 -12.09477 -11.89448 -11.74735 -11.73324 -11.29473 -11.04321 -10.78586 -10.66771 -10.48173 -10.28884 -10.03865 -9.68480 -9.58408 -9.23068 -8.67917 -8.44345 -8.39206 -6.97517 -6.16137 -3.21335 0.65722 0.73973 2.69626 2.91210 3.27017 3.47535 3.52017 3.69203 3.85173 3.90604 4.15483 4.29814 4.46584 4.54973 4.63767 4.78618 5.02183 5.07118 5.17045 5.18298 5.20100 5.22763 5.29420 5.34211 5.42592 5.55859 5.57792 5.61268 5.68495 5.75623 5.78267 5.84325 5.86928 6.03036 6.07103 6.12959 6.34717 6.42334 6.51178 6.59084 6.85682 6.93484 6.98048 7.57250 7.77648 8.26923 8.44574 8.96101 9.75537 10.31782 11.16370 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.002428 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.834973 B =11529.391477 C =11908.257872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.128 4.128 4 C 0.113 3.887 5 F -0.130 7.130 6 C -0.073 4.073 7 C -0.103 4.103 8 C 0.516 3.484 9 O -0.542 6.542 10 N -0.593 5.593 11 C 0.065 3.935 12 C 0.127 3.873 13 H 0.102 0.898 14 C -0.145 4.145 15 C 0.136 3.864 16 N -0.600 5.600 17 C -0.337 4.337 18 H 0.063 0.937 19 C -0.023 4.023 20 N -0.913 5.913 21 Si 1.064 2.936 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.293 1.293 25 C 0.126 3.874 26 C -0.110 4.110 27 C 0.087 3.913 28 F -0.135 7.135 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.266 0.734 43 H 0.035 0.965 44 H 0.029 0.971 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.333 2.202 7.661 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.094 3.906 5 F -0.109 7.109 6 C -0.074 4.074 7 C -0.143 4.143 8 C 0.304 3.696 9 O -0.420 6.420 10 N -0.325 5.325 11 C -0.077 4.077 12 C 0.023 3.977 13 H 0.120 0.880 14 C -0.185 4.185 15 C 0.010 3.990 16 N -0.328 5.328 17 C -0.465 4.465 18 H 0.081 0.919 19 C -0.225 4.225 20 N -0.554 5.554 21 Si 0.893 3.107 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.220 1.220 25 C 0.000 4.000 26 C -0.128 4.128 27 C 0.067 3.933 28 F -0.113 7.113 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.987 2.328 7.258 21.391 hybrid contribution -1.468 -0.220 -0.092 1.487 sum -21.455 2.109 7.166 22.718 Atomic orbital electron populations 1.20751 0.89437 1.03776 1.03087 1.19716 0.97290 0.91043 1.01379 1.20821 0.91917 0.98819 1.03099 1.17417 0.89847 0.81085 1.02260 1.91519 1.80233 1.45532 1.93599 1.19162 0.95177 0.91483 1.01590 1.20664 0.91088 1.05850 0.96656 1.20278 0.82220 0.76952 0.90199 1.90690 1.54886 1.50157 1.46236 1.47773 1.05166 1.70065 1.09516 1.22141 0.95088 1.01348 0.89145 1.22114 0.96843 0.96261 0.82467 0.87966 1.23187 0.97147 0.96372 1.01765 1.21796 0.94079 0.86597 0.96491 1.44574 1.00233 1.14797 1.73207 1.19704 0.88330 1.16807 1.21613 0.91939 1.25748 1.00903 1.00225 0.95612 1.70825 1.30364 1.45612 1.08608 0.83539 0.76071 0.75758 0.75319 1.21091 1.22117 1.22008 1.21673 0.85875 0.94533 0.97951 1.20850 0.92180 0.98729 1.01091 1.17376 0.89716 0.81117 1.05046 1.91494 1.80122 1.45703 1.93989 0.90411 0.90620 0.90775 0.83725 0.87082 0.87226 0.92504 0.91822 0.88036 0.90551 0.91559 0.94670 0.93299 0.92240 0.94748 0.95353 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.83 36.00 0.35 -0.41 16 2 C -0.09 -0.89 5.88 -104.56 -0.62 -1.50 16 3 C -0.13 -1.26 9.68 -39.52 -0.38 -1.64 16 4 C 0.11 1.36 7.14 -39.42 -0.28 1.07 16 5 F -0.13 -1.70 16.66 2.25 0.04 -1.67 16 6 C -0.07 -0.85 4.42 -104.56 -0.46 -1.32 16 7 C -0.10 -1.17 4.11 -29.04 -0.12 -1.29 16 8 C 0.52 8.02 7.66 -10.99 -0.08 7.93 16 9 O -0.54 -10.14 15.33 5.55 0.09 -10.06 16 10 N -0.59 -9.55 2.83 -171.84 -0.49 -10.03 16 11 C 0.07 0.97 8.34 59.84 0.50 1.47 16 12 C 0.13 2.29 3.57 -66.10 -0.24 2.05 16 13 H 0.10 1.87 6.99 -51.93 -0.36 1.51 16 14 C -0.15 -2.62 6.55 -24.47 -0.16 -2.78 16 15 C 0.14 2.98 4.50 -2.42 -0.01 2.97 16 16 N -0.60 -14.64 2.85 -169.94 -0.48 -15.12 16 17 C -0.34 -9.27 10.00 -15.06 -0.15 -9.42 16 18 H 0.06 1.74 7.97 -52.49 -0.42 1.32 16 19 C -0.02 -0.64 5.09 -17.43 -0.09 -0.72 16 20 N -0.91 -26.37 13.01 55.49 0.72 -25.65 16 21 Si 1.06 24.88 30.00 -169.99 -5.10 19.77 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.13 2.65 6.24 -3.07 -0.02 2.63 16 26 C -0.11 -1.19 9.65 -39.52 -0.38 -1.57 16 27 C 0.09 0.93 7.24 -39.43 -0.29 0.64 16 28 F -0.13 -1.46 16.47 2.25 0.04 -1.42 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.07 0.50 7.64 -51.93 -0.40 0.11 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.11 1.01 7.26 -51.93 -0.38 0.63 16 34 H 0.11 1.09 7.90 -51.93 -0.41 0.68 16 35 H 0.06 0.77 7.99 -51.93 -0.41 0.36 16 36 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 37 H 0.10 1.90 5.20 -51.93 -0.27 1.63 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.79 4.20 -51.93 -0.22 0.57 16 41 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16 42 H 0.27 7.53 6.18 -40.82 -0.25 7.28 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 45 H 0.15 1.33 8.04 -52.49 -0.42 0.91 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -32.32 369.02 -8.09 -40.42 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.04 Total: 0.08 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.42 Total: -1.89 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.25 Total: -50.80 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.07 Total: -3.09 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.10 Total: 19.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.32 -8.09 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033288021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.580 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds