Wall clock time and date at job start Tue Mar 31 2020 21:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38231 * 119.84187 * 2 1 4 4 C 1.38268 * 120.14460 * 179.74351 * 3 2 1 5 5 F 1.35106 * 120.08381 * 180.27741 * 4 3 2 6 6 C 1.39835 * 119.83250 * 0.57406 * 4 3 2 7 7 C 1.47704 * 120.15673 * 179.70404 * 6 4 3 8 8 O 1.21571 * 119.99729 * 359.71532 * 7 6 4 9 9 N 1.34777 * 120.00186 * 179.72424 * 7 6 4 10 10 C 1.46504 * 119.99983 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.24357 * 324.65723 * 10 9 7 12 12 C 1.54842 * 109.35713 * 205.00095 * 10 9 7 13 13 C 1.50120 * 110.81478 * 200.92560 * 12 10 9 14 14 C 1.52533 * 105.41491 * 97.68551 * 13 12 10 15 15 C 1.46237 * 114.27420 * 270.59638 * 14 13 12 16 16 N 1.50172 * 107.53509 * 58.40495 * 15 14 13 17 17 C 1.36931 * 120.53516 * 109.56592 * 16 15 14 18 18 H 1.08004 * 119.99977 * 172.84823 * 17 16 15 19 19 C 1.38819 * 120.00300 * 352.84705 * 17 16 15 20 20 N 1.31616 * 119.99532 * 319.30052 * 19 17 16 21 21 Si 1.86802 * 120.00013 * 139.29464 * 19 17 16 22 22 H 1.48494 * 109.46784 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47014 * 60.00199 * 21 19 17 24 24 H 1.48496 * 109.47313 * 300.00228 * 21 19 17 25 25 C 1.43434 * 118.92416 * 289.84036 * 16 15 14 26 26 C 1.39616 * 119.69201 * 359.42601 * 6 4 3 27 27 C 1.38108 * 119.84814 * 0.27647 * 26 6 4 28 28 F 1.35104 * 119.91650 * 179.97438 * 27 26 6 29 29 H 1.08997 * 109.47386 * 269.98054 * 1 2 3 30 30 H 1.09003 * 109.46994 * 29.98578 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.98015 * 1 2 3 32 32 H 1.08004 * 119.92554 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00018 * 359.97438 * 9 7 6 34 34 H 1.09009 * 109.20945 * 80.58420 * 12 10 9 35 35 H 1.08999 * 109.20807 * 321.27404 * 12 10 9 36 36 H 1.09001 * 110.25261 * 338.71142 * 13 12 10 37 37 H 1.08995 * 110.37540 * 216.71968 * 13 12 10 38 38 H 1.08992 * 108.52468 * 149.35447 * 14 13 12 39 39 H 1.08992 * 108.39616 * 31.74264 * 14 13 12 40 40 H 1.09003 * 109.84600 * 298.89501 * 15 14 13 41 41 H 1.09005 * 109.89964 * 177.94494 * 15 14 13 42 42 H 0.97000 * 120.00306 * 353.65432 * 20 19 17 43 43 H 1.09007 * 108.15424 * 213.03102 * 25 16 15 44 44 H 1.08997 * 108.16212 * 329.59765 * 25 16 15 45 45 H 1.08001 * 120.07299 * 180.29776 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1990 0.0000 4 6 3.5775 1.2063 0.0054 5 9 4.2485 2.3790 0.0110 6 6 4.2796 -0.0030 -0.0014 7 6 5.7566 -0.0035 -0.0023 8 8 6.3648 1.0492 -0.0025 9 7 6.4301 -1.1709 -0.0032 10 6 7.8952 -1.1713 -0.0047 11 1 8.2541 -0.3319 -0.6003 12 6 8.4074 -2.4954 -0.6229 13 6 9.8211 -2.7701 -0.1993 14 6 9.7120 -3.7422 0.9711 15 6 9.6007 -3.0980 2.2793 16 7 8.3844 -2.2178 2.2481 17 6 7.2688 -2.5469 2.9706 18 1 6.4433 -1.8535 3.0353 19 6 7.1987 -3.7719 3.6200 20 7 7.6503 -4.8572 3.0281 21 14 6.4638 -3.8797 5.3340 22 1 6.5061 -5.2880 5.8029 23 1 5.0551 -3.4112 5.2988 24 1 7.2464 -3.0254 6.2629 25 6 8.4082 -1.0299 1.4446 26 6 3.5779 -1.2100 -0.0013 27 6 2.1968 -1.2023 -0.0004 28 9 1.5164 -2.3695 -0.0009 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6510 2.1322 0.0004 33 1 5.9449 -2.0108 -0.0028 34 1 8.3663 -2.4233 -1.7098 35 1 7.7687 -3.3153 -0.2942 36 1 10.3052 -1.8474 0.1206 37 1 10.3805 -3.2251 -1.0166 38 1 10.5949 -4.3813 0.9739 39 1 8.8332 -4.3682 0.8176 40 1 10.4886 -2.4957 2.4719 41 1 9.4907 -3.8539 3.0569 42 1 7.9468 -4.8188 2.1053 43 1 7.8030 -0.2716 1.9416 44 1 9.4349 -0.6660 1.4065 45 1 4.1139 -2.1476 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034255421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:13 Heat of formation + Delta-G solvation = -70.403963 kcal Electronic energy + Delta-G solvation = -30503.104267 eV Core-core repulsion = 26157.479932 eV Total energy + Delta-G solvation = -4345.624335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.07287 -48.88306 -40.02428 -38.74996 -37.76444 -34.55259 -33.53187 -33.10390 -31.17100 -30.43589 -29.99736 -27.81966 -26.02977 -24.34541 -23.40021 -23.10508 -22.25758 -20.73980 -20.08683 -19.37824 -18.13285 -17.44357 -17.24465 -17.08123 -16.12615 -16.01377 -15.58055 -15.43917 -15.10183 -14.68671 -14.55262 -14.45178 -14.25729 -13.66082 -13.62102 -13.53807 -13.42946 -13.39159 -12.76976 -12.72927 -12.44169 -12.24827 -12.18155 -11.88838 -11.66114 -11.58781 -11.09486 -10.89194 -10.60579 -10.43721 -10.20700 -10.04755 -9.84594 -9.78565 -9.61760 -9.47756 -9.34193 -8.81358 -8.64600 -8.17617 -6.99209 -6.20077 -3.04756 0.41674 0.78029 2.69860 3.35570 3.49319 3.57055 3.60357 3.72701 3.91083 3.95965 4.26429 4.38400 4.58653 4.75614 4.87802 5.10354 5.12322 5.15429 5.24673 5.27884 5.29796 5.37613 5.53363 5.63060 5.64947 5.73735 5.80571 5.89588 5.90872 5.95275 5.98542 6.21967 6.30654 6.34302 6.51715 6.55970 6.64672 6.65569 6.83006 6.87939 7.00276 7.20968 7.22707 7.82732 7.98468 8.48752 8.50700 9.04689 9.82670 10.27422 11.10146 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.004257 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.260368 B = 6575.064719 C = 7875.170768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.142 4.142 4 C 0.152 3.848 5 F -0.111 7.111 6 C -0.141 4.141 7 C 0.554 3.446 8 O -0.534 6.534 9 N -0.694 5.694 10 C 0.114 3.886 11 H 0.078 0.922 12 C -0.112 4.112 13 C -0.110 4.110 14 C -0.135 4.135 15 C 0.129 3.871 16 N -0.586 5.586 17 C -0.353 4.353 18 H 0.063 0.937 19 C -0.014 4.014 20 N -0.900 5.900 21 Si 1.033 2.967 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.295 1.295 25 C 0.153 3.847 26 C -0.084 4.084 27 C 0.080 3.920 28 F -0.130 7.130 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.398 0.602 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.095 0.905 42 H 0.273 0.727 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 6.763 -9.413 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.161 4.161 4 C 0.131 3.869 5 F -0.089 7.089 6 C -0.146 4.146 7 C 0.340 3.660 8 O -0.412 6.412 9 N -0.343 5.343 10 C 0.007 3.993 11 H 0.096 0.904 12 C -0.150 4.150 13 C -0.148 4.148 14 C -0.175 4.175 15 C 0.005 3.995 16 N -0.307 5.307 17 C -0.481 4.481 18 H 0.081 0.919 19 C -0.217 4.217 20 N -0.542 5.542 21 Si 0.864 3.136 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.223 1.223 25 C 0.022 3.978 26 C -0.104 4.104 27 C 0.061 3.939 28 F -0.108 7.108 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.168 0.832 33 H 0.234 0.766 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.095 6.457 -8.093 13.781 hybrid contribution -0.094 0.528 -1.274 1.383 sum -9.189 6.985 -9.368 14.865 Atomic orbital electron populations 1.20816 0.89146 1.03873 1.03536 1.19892 0.97501 0.90954 0.98864 1.20836 0.91660 0.99008 1.04555 1.17620 0.89512 0.81054 0.98666 1.91609 1.80365 1.44163 1.92719 1.20019 0.94964 0.92188 1.07384 1.17747 0.85782 0.84681 0.77823 1.90807 1.69190 1.30900 1.50344 1.45911 1.08080 1.07641 1.72693 1.22860 0.78088 0.97460 1.00927 0.90435 1.21672 0.97491 0.97546 0.98276 1.20939 0.95742 1.00063 0.98056 1.21095 1.01305 0.98389 0.96671 1.20603 0.87665 0.94675 0.96570 1.44370 1.11784 1.24500 1.50094 1.19878 0.97875 1.02631 1.27680 0.91905 1.25377 1.01226 0.90615 1.04464 1.70877 1.41662 1.27449 1.14210 0.83985 0.75692 0.75535 0.78435 1.21332 1.22221 1.22301 1.20622 0.97930 0.90316 0.88895 1.21256 0.92489 0.98738 0.97897 1.17278 0.89479 0.81431 1.05717 1.91524 1.79686 1.45653 1.93977 0.89957 0.90439 0.90527 0.83185 0.76617 0.93548 0.90989 0.91693 0.92563 0.94148 0.91036 0.95777 0.88718 0.91402 0.93995 0.94265 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.82 36.01 0.35 -0.51 16 2 C -0.07 -0.74 5.89 -104.49 -0.62 -1.36 16 3 C -0.14 -1.53 9.66 -39.57 -0.38 -1.91 16 4 C 0.15 2.18 7.28 -38.97 -0.28 1.89 16 5 F -0.11 -1.79 15.55 2.25 0.04 -1.76 16 6 C -0.14 -2.17 5.88 -104.92 -0.62 -2.79 16 7 C 0.55 10.07 7.58 -12.39 -0.09 9.97 16 8 O -0.53 -11.27 15.00 5.30 0.08 -11.19 16 9 N -0.69 -12.10 5.03 -53.14 -0.27 -12.36 16 10 C 0.11 2.05 2.91 -66.23 -0.19 1.86 16 11 H 0.08 1.40 7.57 -51.93 -0.39 1.00 16 12 C -0.11 -1.84 5.23 -27.19 -0.14 -1.98 16 13 C -0.11 -1.77 5.76 -28.40 -0.16 -1.94 16 14 C -0.14 -2.56 4.96 -30.18 -0.15 -2.71 16 15 C 0.13 2.82 5.22 -5.20 -0.03 2.79 16 16 N -0.59 -13.61 2.62 -175.40 -0.46 -14.07 16 17 C -0.35 -9.18 9.46 -15.06 -0.14 -9.33 16 18 H 0.06 1.72 8.05 -52.48 -0.42 1.29 16 19 C -0.01 -0.38 4.53 -17.43 -0.08 -0.46 16 20 N -0.90 -24.70 11.99 55.49 0.67 -24.04 16 21 Si 1.03 24.48 30.06 -169.99 -5.11 19.37 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 3.19 4.75 -4.93 -0.02 3.17 16 26 C -0.08 -1.14 9.52 -39.11 -0.37 -1.51 16 27 C 0.08 0.99 7.23 -39.49 -0.29 0.71 16 28 F -0.13 -1.65 16.45 2.25 0.04 -1.61 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.08 0.55 7.62 -51.93 -0.40 0.16 16 32 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.40 6.54 6.47 -40.82 -0.26 6.28 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 1.32 6.58 -51.93 -0.34 0.98 16 36 H 0.06 1.05 6.28 -51.93 -0.33 0.72 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.51 4.65 -51.93 -0.24 1.27 16 40 H 0.02 0.50 8.13 -51.93 -0.42 0.07 16 41 H 0.09 2.36 5.61 -51.93 -0.29 2.07 16 42 H 0.27 7.25 4.95 -40.82 -0.20 7.05 16 43 H 0.04 0.98 7.81 -51.93 -0.41 0.57 16 44 H 0.04 0.77 6.89 -51.93 -0.36 0.42 16 45 H 0.15 1.94 6.40 -52.49 -0.34 1.60 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -30.04 359.42 -8.55 -38.58 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.73 Total: 5.76 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -3.22 Total: -4.10 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.06 Total: -50.47 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.07 Total: -3.37 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.11 Total: 19.37 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.04 -8.55 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034255421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.819 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds