Wall clock time and date at job start Tue Mar 31 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38303 * 119.81260 * 2 1 4 4 C 1.38212 * 120.19351 * 179.97438 * 3 2 1 5 5 F 1.35100 * 120.09962 * 180.02562 * 4 3 2 6 6 C 1.39901 * 119.80808 * 0.02562 * 4 3 2 7 7 C 1.47541 * 120.19293 * 179.97438 * 6 4 3 8 8 O 1.21589 * 120.00224 * 89.99847 * 7 6 4 9 9 N 1.34773 * 119.99962 * 269.99883 * 7 6 4 10 10 C 1.46498 * 120.00211 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47055 * 324.99941 * 10 9 7 12 12 C 1.52996 * 109.47372 * 84.99699 * 10 9 7 13 13 C 1.52994 * 109.47386 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47449 * 300.00168 * 13 12 10 15 15 H 1.09003 * 109.46903 * 300.00159 * 14 13 12 16 16 N 1.46498 * 109.47606 * 180.02562 * 14 13 12 17 17 C 1.36935 * 120.00239 * 84.99792 * 16 14 13 18 18 H 1.07998 * 119.99613 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00008 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00103 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00201 * 359.72443 * 19 17 16 22 22 H 1.48501 * 109.47085 * 270.27640 * 21 19 17 23 23 H 1.48497 * 109.46789 * 30.27649 * 21 19 17 24 24 H 1.48490 * 109.47245 * 150.27799 * 21 19 17 25 25 C 1.53007 * 109.46922 * 59.99953 * 14 13 12 26 26 C 1.52998 * 109.47423 * 205.00299 * 10 9 7 27 27 C 1.39911 * 119.62127 * 0.26916 * 6 4 3 28 28 F 1.35098 * 120.09723 * 179.72501 * 27 6 4 29 29 C 1.38222 * 119.80139 * 359.44920 * 27 6 4 30 30 H 1.09002 * 109.47214 * 89.99680 * 1 2 3 31 31 H 1.09000 * 109.47164 * 210.00035 * 1 2 3 32 32 H 1.09004 * 109.47095 * 329.99962 * 1 2 3 33 33 H 1.08004 * 119.90136 * 359.95986 * 3 2 1 34 34 H 0.97004 * 120.00060 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47419 * 300.00594 * 12 10 9 36 36 H 1.09003 * 109.46833 * 60.00106 * 12 10 9 37 37 H 1.09003 * 109.47448 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.47197 * 60.00146 * 13 12 10 39 39 H 0.97004 * 119.99747 * 265.00531 * 16 14 13 40 40 H 0.96999 * 120.00174 * 179.72503 * 20 19 17 41 41 H 1.08996 * 109.47219 * 59.99955 * 25 14 13 42 42 H 1.09001 * 109.46845 * 180.02562 * 25 14 13 43 43 H 1.08994 * 109.47476 * 59.99343 * 26 10 9 44 44 H 1.09003 * 109.46713 * 299.99852 * 26 10 9 45 45 H 1.08004 * 119.90118 * 180.26929 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2000 0.0000 4 6 3.5767 1.2092 0.0005 5 9 4.2464 2.3825 0.0011 6 6 4.2802 -0.0001 0.0005 7 6 5.7556 -0.0002 0.0005 8 8 6.3636 -0.0002 1.0535 9 7 6.4294 -0.0003 -1.1666 10 6 7.8944 0.0002 -1.1667 11 1 8.2576 0.5900 -0.3250 12 6 8.4049 -1.4365 -1.0406 13 6 9.9349 -1.4360 -1.0400 14 6 10.4452 -0.8264 -2.3472 15 1 10.0824 -1.4160 -3.1891 16 7 11.9102 -0.8264 -2.3470 17 6 12.5950 -1.9407 -2.7524 18 1 12.0550 -2.8195 -3.0728 19 6 13.9830 -1.9409 -2.7517 20 7 14.6413 -3.0119 -3.1419 21 14 14.9170 -0.4183 -2.2048 22 1 15.1594 0.4611 -3.3766 23 1 14.1169 0.3159 -1.1920 24 1 16.2170 -0.8216 -1.6113 25 6 9.9348 0.6105 -2.4733 26 6 8.4042 0.6097 -2.4742 27 6 3.5766 -1.2094 -0.0057 28 9 4.2462 -2.3827 -0.0114 29 6 2.1944 -1.2001 -0.0003 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6499 2.1326 -0.0007 34 1 5.9444 -0.0006 -2.0067 35 1 8.0417 -1.8708 -0.1091 36 1 8.0417 -2.0263 -1.8823 37 1 10.2986 -2.4597 -0.9506 38 1 10.2977 -0.8463 -0.1981 39 1 12.3952 -0.0370 -2.0595 40 1 15.6113 -3.0106 -3.1451 41 1 10.2975 1.2002 -1.6314 42 1 10.2980 1.0447 -3.4048 43 1 8.0406 1.6333 -2.5640 44 1 8.0411 0.0199 -3.3158 45 1 1.6497 -2.1327 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034689727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:47 Heat of formation + Delta-G solvation = -103.834805 kcal Electronic energy + Delta-G solvation = -28954.140545 eV Core-core repulsion = 24607.066540 eV Total energy + Delta-G solvation = -4347.074005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -49.51994 -49.47680 -40.38158 -39.25853 -37.97479 -35.01760 -33.56186 -32.85747 -30.98850 -30.96675 -30.47785 -28.70411 -27.33738 -23.77376 -23.50551 -22.87658 -22.42760 -21.19960 -20.67169 -19.73737 -18.43890 -17.95053 -17.89931 -17.39165 -16.79328 -16.25926 -16.09587 -15.77445 -15.73001 -15.08253 -14.71536 -14.69887 -14.31089 -14.16890 -14.03536 -13.81317 -13.73384 -13.43651 -12.93914 -12.68643 -12.57358 -12.42055 -12.41291 -12.20052 -12.07733 -11.95222 -11.74773 -11.15990 -10.88886 -10.86779 -10.69425 -10.28762 -10.22502 -10.03165 -9.82183 -9.54578 -9.42283 -9.35976 -9.09021 -8.86143 -7.23064 -5.73865 -3.09035 0.19257 0.38950 2.23201 2.61582 2.88389 3.22204 3.40420 3.43710 3.48084 3.73712 3.93709 4.25103 4.25572 4.46110 4.62253 4.76293 4.81086 4.94272 4.95610 4.95971 5.11299 5.17690 5.20824 5.39475 5.40691 5.47727 5.52475 5.55519 5.62346 5.66932 5.75929 5.80020 5.93234 6.09450 6.11198 6.16870 6.19145 6.37021 6.45189 6.51592 6.64937 6.91384 7.07044 7.25146 7.92569 8.03014 8.45489 9.24305 9.97072 10.17137 11.44543 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.002229 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.509095 B =12558.933234 C =13095.816054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.013 4.013 3 C -0.168 4.168 4 C 0.168 3.832 5 F -0.120 7.120 6 C -0.205 4.205 7 C 0.565 3.435 8 O -0.516 6.516 9 N -0.711 5.711 10 C 0.143 3.857 11 H 0.089 0.911 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.181 3.819 15 H 0.056 0.944 16 N -0.749 5.749 17 C -0.241 4.241 18 H 0.090 0.910 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.277 1.277 24 H -0.292 1.292 25 C -0.124 4.124 26 C -0.118 4.118 27 C 0.170 3.830 28 F -0.118 7.118 29 C -0.168 4.168 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.400 0.600 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.437 9.065 4.142 34.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.013 4.013 3 C -0.187 4.187 4 C 0.148 3.852 5 F -0.098 7.098 6 C -0.210 4.210 7 C 0.349 3.651 8 O -0.391 6.391 9 N -0.360 5.360 10 C 0.040 3.960 11 H 0.108 0.892 12 C -0.164 4.164 13 C -0.173 4.173 14 C 0.072 3.928 15 H 0.074 0.926 16 N -0.391 5.391 17 C -0.371 4.371 18 H 0.108 0.892 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.203 1.203 24 H -0.218 1.218 25 C -0.162 4.162 26 C -0.157 4.157 27 C 0.150 3.850 28 F -0.096 7.096 29 C -0.187 4.187 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.167 0.833 34 H 0.234 0.766 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -32.821 8.836 4.807 34.328 hybrid contribution 0.876 0.935 0.075 1.284 sum -31.944 9.770 4.881 33.760 Atomic orbital electron populations 1.20915 0.89163 1.04004 1.03503 1.19697 0.97009 0.91058 0.93574 1.21029 0.91467 1.00048 1.06189 1.17244 0.89639 0.79846 0.98462 1.91590 1.80604 1.44526 1.93102 1.19978 0.95297 0.92653 1.13059 1.17712 0.85661 0.77023 0.84742 1.90856 1.68897 1.48302 1.31091 1.46133 1.08117 1.73987 1.07790 1.21220 0.77127 0.98075 0.99574 0.89244 1.21899 0.97529 0.95079 1.01846 1.22190 0.92123 1.02638 1.00348 1.20224 0.84364 0.92956 0.95257 0.92632 1.42794 1.00739 1.15361 1.80237 1.19078 0.89477 0.92655 1.35841 0.89229 1.24678 0.96193 0.96962 1.01481 1.69704 1.06961 1.27840 1.53796 0.86545 0.79742 0.83697 0.78539 1.21145 1.20304 1.21823 1.21801 0.93146 0.98989 1.02312 1.21747 0.97088 1.00578 0.96269 1.17270 0.89652 0.79931 0.98190 1.91608 1.80561 1.44418 1.93009 1.21053 0.91495 1.00083 1.06043 0.89829 0.90432 0.90467 0.83317 0.76595 0.92134 0.91942 0.91199 0.92563 0.80698 0.93125 0.92031 0.91156 0.91671 0.91230 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.25 10.00 36.00 0.36 0.11 16 2 C -0.01 -0.07 5.88 -104.57 -0.62 -0.68 16 3 C -0.17 -1.03 9.65 -39.57 -0.38 -1.41 16 4 C 0.17 1.55 7.29 -38.97 -0.28 1.27 16 5 F -0.12 -1.28 16.83 2.25 0.04 -1.24 16 6 C -0.20 -2.23 5.64 -104.86 -0.59 -2.82 16 7 C 0.57 7.80 6.51 -12.47 -0.08 7.72 16 8 O -0.52 -9.27 16.77 5.29 0.09 -9.18 16 9 N -0.71 -8.37 5.07 -54.85 -0.28 -8.65 16 10 C 0.14 1.93 2.45 -67.93 -0.17 1.76 16 11 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 12 C -0.12 -1.88 5.49 -26.74 -0.15 -2.03 16 13 C -0.13 -2.39 5.50 -26.73 -0.15 -2.54 16 14 C 0.18 3.44 2.77 -67.93 -0.19 3.25 16 15 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 16 N -0.75 -17.78 4.93 -53.42 -0.26 -18.04 16 17 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 20 N -0.94 -29.65 13.97 55.49 0.78 -28.87 16 21 Si 0.88 22.44 27.73 -169.99 -4.71 17.72 16 22 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 25 C -0.12 -1.87 5.39 -26.70 -0.14 -2.01 16 26 C -0.12 -1.42 5.39 -26.71 -0.14 -1.57 16 27 C 0.17 1.62 7.29 -38.96 -0.28 1.34 16 28 F -0.12 -1.34 16.83 2.25 0.04 -1.30 16 29 C -0.17 -1.06 9.65 -39.56 -0.38 -1.45 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 32 H 0.08 0.10 8.08 -51.93 -0.42 -0.32 16 33 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 34 H 0.40 3.57 8.59 -40.82 -0.35 3.22 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.36 8.44 5.66 -40.82 -0.23 8.21 16 40 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -34.91 379.53 -8.52 -43.43 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.48 Total: 6.46 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.45 Total: -6.05 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.23 Total: -55.57 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.91 -8.52 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034689727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.406 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds