Wall clock time and date at job start Tue Mar 31 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38303 * 119.81260 * 2 1 4 4 C 1.38212 * 120.19351 * 179.97438 * 3 2 1 5 5 F 1.35100 * 120.09962 * 180.02562 * 4 3 2 6 6 C 1.39901 * 119.80808 * 0.02562 * 4 3 2 7 7 C 1.47541 * 120.19293 * 179.97438 * 6 4 3 8 8 O 1.21589 * 120.00224 * 89.99847 * 7 6 4 9 9 N 1.34773 * 119.99962 * 269.99883 * 7 6 4 10 10 C 1.46498 * 120.00211 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47055 * 324.99941 * 10 9 7 12 12 C 1.52996 * 109.47372 * 84.99699 * 10 9 7 13 13 C 1.52994 * 109.47386 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47449 * 300.00168 * 13 12 10 15 15 H 1.09003 * 109.46903 * 300.00159 * 14 13 12 16 16 N 1.46498 * 109.47606 * 180.02562 * 14 13 12 17 17 C 1.36935 * 120.00239 * 84.99792 * 16 14 13 18 18 H 1.07998 * 119.99613 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00008 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00103 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00201 * 359.72443 * 19 17 16 22 22 H 1.48501 * 109.47085 * 270.27640 * 21 19 17 23 23 H 1.48497 * 109.46789 * 30.27649 * 21 19 17 24 24 H 1.48490 * 109.47245 * 150.27799 * 21 19 17 25 25 C 1.53007 * 109.46922 * 59.99953 * 14 13 12 26 26 C 1.52998 * 109.47423 * 205.00299 * 10 9 7 27 27 C 1.39911 * 119.62127 * 0.26916 * 6 4 3 28 28 F 1.35098 * 120.09723 * 179.72501 * 27 6 4 29 29 C 1.38222 * 119.80139 * 359.44920 * 27 6 4 30 30 H 1.09002 * 109.47214 * 89.99680 * 1 2 3 31 31 H 1.09000 * 109.47164 * 210.00035 * 1 2 3 32 32 H 1.09004 * 109.47095 * 329.99962 * 1 2 3 33 33 H 1.08004 * 119.90136 * 359.95986 * 3 2 1 34 34 H 0.97004 * 120.00060 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47419 * 300.00594 * 12 10 9 36 36 H 1.09003 * 109.46833 * 60.00106 * 12 10 9 37 37 H 1.09003 * 109.47448 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.47197 * 60.00146 * 13 12 10 39 39 H 0.97004 * 119.99747 * 265.00531 * 16 14 13 40 40 H 0.96999 * 120.00174 * 179.72503 * 20 19 17 41 41 H 1.08996 * 109.47219 * 59.99955 * 25 14 13 42 42 H 1.09001 * 109.46845 * 180.02562 * 25 14 13 43 43 H 1.08994 * 109.47476 * 59.99343 * 26 10 9 44 44 H 1.09003 * 109.46713 * 299.99852 * 26 10 9 45 45 H 1.08004 * 119.90118 * 180.26929 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2000 0.0000 4 6 3.5767 1.2092 0.0005 5 9 4.2464 2.3825 0.0011 6 6 4.2802 -0.0001 0.0005 7 6 5.7556 -0.0002 0.0005 8 8 6.3636 -0.0002 1.0535 9 7 6.4294 -0.0003 -1.1666 10 6 7.8944 0.0002 -1.1667 11 1 8.2576 0.5900 -0.3250 12 6 8.4049 -1.4365 -1.0406 13 6 9.9349 -1.4360 -1.0400 14 6 10.4452 -0.8264 -2.3472 15 1 10.0824 -1.4160 -3.1891 16 7 11.9102 -0.8264 -2.3470 17 6 12.5950 -1.9407 -2.7524 18 1 12.0550 -2.8195 -3.0728 19 6 13.9830 -1.9409 -2.7517 20 7 14.6413 -3.0119 -3.1419 21 14 14.9170 -0.4183 -2.2048 22 1 15.1594 0.4611 -3.3766 23 1 14.1169 0.3159 -1.1920 24 1 16.2170 -0.8216 -1.6113 25 6 9.9348 0.6105 -2.4733 26 6 8.4042 0.6097 -2.4742 27 6 3.5766 -1.2094 -0.0057 28 9 4.2462 -2.3827 -0.0114 29 6 2.1944 -1.2001 -0.0003 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6499 2.1326 -0.0007 34 1 5.9444 -0.0006 -2.0067 35 1 8.0417 -1.8708 -0.1091 36 1 8.0417 -2.0263 -1.8823 37 1 10.2986 -2.4597 -0.9506 38 1 10.2977 -0.8463 -0.1981 39 1 12.3952 -0.0370 -2.0595 40 1 15.6113 -3.0106 -3.1451 41 1 10.2975 1.2002 -1.6314 42 1 10.2980 1.0447 -3.4048 43 1 8.0406 1.6333 -2.5640 44 1 8.0411 0.0199 -3.3158 45 1 1.6497 -2.1327 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034689727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:46 Heat of formation + Delta-G solvation = -126.761059 kcal Electronic energy + Delta-G solvation = -28955.134702 eV Core-core repulsion = 24607.066540 eV Total energy + Delta-G solvation = -4348.068162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.24737 -50.22270 -41.38703 -40.02451 -39.21715 -36.56391 -34.82281 -33.89386 -32.81038 -31.76651 -31.54659 -29.74222 -28.32849 -25.37327 -24.11081 -23.99580 -23.59511 -22.45304 -21.75777 -21.18079 -19.72977 -19.10757 -18.61669 -18.52629 -17.76085 -17.03441 -16.92915 -16.83375 -16.52712 -16.50016 -16.09956 -15.79405 -15.54575 -15.14612 -14.98319 -14.79560 -14.64899 -14.39742 -14.38378 -14.19989 -13.74255 -13.46626 -13.17079 -13.02473 -12.99401 -12.91486 -12.76812 -12.59981 -12.43727 -12.37603 -12.11601 -12.03776 -11.81346 -11.55408 -11.29124 -11.24091 -10.91176 -10.24249 -9.99946 -9.94625 -9.31283 -8.02313 -5.35349 -0.41233 -0.17736 1.19814 1.37190 1.40475 1.47635 1.86540 2.14321 2.48244 2.58038 3.17345 3.27987 3.30046 3.53958 3.60693 3.66930 3.69085 3.79709 4.01561 4.18399 4.24549 4.28998 4.42856 4.49054 4.52039 4.52899 4.56045 4.58360 4.68171 4.78201 4.87573 4.90720 4.90804 5.02040 5.06650 5.17534 5.20631 5.26475 5.29075 5.31610 5.44458 5.54589 5.61768 5.77859 6.22274 6.27073 6.93585 7.08259 7.85116 8.04144 9.19282 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.002229 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.509095 B =12558.933234 C =13095.816054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.001 3.999 3 C -0.155 4.155 4 C 0.152 3.848 5 F -0.133 7.133 6 C -0.228 4.228 7 C 0.563 3.437 8 O -0.569 6.569 9 N -0.697 5.697 10 C 0.149 3.851 11 H 0.071 0.929 12 C -0.113 4.113 13 C -0.124 4.124 14 C 0.175 3.825 15 H 0.049 0.951 16 N -0.753 5.753 17 C -0.226 4.226 18 H 0.056 0.944 19 C -0.068 4.068 20 N -0.985 5.985 21 Si 0.956 3.044 22 H -0.275 1.275 23 H -0.255 1.255 24 H -0.298 1.298 25 C -0.116 4.116 26 C -0.106 4.106 27 C 0.148 3.852 28 F -0.136 7.136 29 C -0.157 4.157 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.416 0.584 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.365 0.635 40 H 0.257 0.743 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.088 11.558 3.743 39.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 C -0.174 4.174 4 C 0.132 3.868 5 F -0.112 7.112 6 C -0.233 4.233 7 C 0.348 3.652 8 O -0.448 6.448 9 N -0.347 5.347 10 C 0.045 3.955 11 H 0.089 0.911 12 C -0.153 4.153 13 C -0.165 4.165 14 C 0.067 3.933 15 H 0.067 0.933 16 N -0.395 5.395 17 C -0.357 4.357 18 H 0.074 0.926 19 C -0.259 4.259 20 N -0.636 5.636 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.180 1.180 24 H -0.225 1.225 25 C -0.154 4.154 26 C -0.144 4.144 27 C 0.128 3.872 28 F -0.115 7.115 29 C -0.175 4.175 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.195 0.805 34 H 0.254 0.746 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.198 0.802 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -36.552 11.359 4.379 38.526 hybrid contribution 1.828 0.070 0.198 1.840 sum -34.723 11.429 4.577 36.841 Atomic orbital electron populations 1.21048 0.86300 1.05329 1.04837 1.20129 0.98750 0.89987 0.91031 1.21392 0.90028 1.01792 1.04148 1.17485 0.90734 0.78813 0.99761 1.91551 1.81135 1.45088 1.93408 1.19829 0.93385 0.94101 1.15965 1.18236 0.87105 0.75640 0.84226 1.90816 1.70364 1.50743 1.32859 1.45977 1.07409 1.72973 1.08310 1.21019 0.78195 0.96303 1.00002 0.91111 1.21758 0.95187 0.96819 1.01503 1.22014 0.94273 1.00469 0.99708 1.20470 0.81847 0.95954 0.94997 0.93315 1.42829 1.02669 1.14013 1.80000 1.19030 0.89664 0.92892 1.34150 0.92623 1.25520 0.97328 1.00455 1.02616 1.69890 1.07071 1.30497 1.56129 0.85392 0.77812 0.79746 0.78723 1.20056 1.17986 1.22533 1.21703 0.95222 0.95640 1.02880 1.21672 0.94654 1.02458 0.95640 1.17561 0.90827 0.78904 0.99885 1.91558 1.81189 1.45312 1.93419 1.21393 0.90023 1.01862 1.04272 0.88229 0.89284 0.89087 0.80491 0.74636 0.93723 0.90815 0.94280 0.93283 0.80217 0.93445 0.91836 0.90229 0.88894 0.89423 0.80797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.07 10.00 71.24 0.71 0.78 16 2 C 0.00 0.01 5.88 -19.83 -0.12 -0.11 16 3 C -0.16 -1.42 9.65 22.28 0.22 -1.21 16 4 C 0.15 2.62 7.29 22.67 0.17 2.79 16 5 F -0.13 -2.75 16.83 44.97 0.76 -1.99 16 6 C -0.23 -4.89 5.64 -20.02 -0.11 -5.01 16 7 C 0.56 15.83 6.51 86.70 0.56 16.39 16 8 O -0.57 -21.36 16.77 -4.00 -0.07 -21.43 16 9 N -0.70 -15.99 5.07 -445.71 -2.26 -18.25 16 10 C 0.15 3.91 2.45 44.99 0.11 4.02 16 11 H 0.07 2.18 7.58 -2.39 -0.02 2.16 16 12 C -0.11 -3.49 5.49 30.59 0.17 -3.33 16 13 C -0.12 -4.62 5.50 30.59 0.17 -4.45 16 14 C 0.18 6.61 2.77 44.99 0.12 6.74 16 15 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 16 N -0.75 -35.68 4.93 -322.94 -1.59 -37.27 16 17 C -0.23 -13.14 10.41 84.03 0.87 -12.27 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 19 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 20 N -0.99 -64.46 13.97 21.65 0.30 -64.15 16 21 Si 0.96 46.68 27.73 68.60 1.90 48.58 16 22 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.26 -11.39 6.52 99.48 0.65 -10.74 16 24 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 25 C -0.12 -3.27 5.39 30.61 0.17 -3.10 16 26 C -0.11 -2.28 5.39 30.61 0.17 -2.11 16 27 C 0.15 2.73 7.29 22.67 0.17 2.90 16 28 F -0.14 -3.15 16.83 44.97 0.76 -2.39 16 29 C -0.16 -1.59 9.65 22.28 0.22 -1.37 16 30 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.09 -0.18 8.08 -2.39 -0.02 -0.20 16 32 H 0.09 -0.22 8.08 -2.39 -0.02 -0.24 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.42 6.78 8.59 -92.71 -0.80 5.98 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.36 16.61 5.66 -92.71 -0.52 16.09 16 40 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -80.72 379.53 3.50 -77.22 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.35 Total: 22.66 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 4.05 Total: -2.98 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -3.55 Total: -119.68 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.07 Total: -21.43 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 1.51 Total: -4.38 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.90 Total: 48.58 kcal Total: -80.72 3.50 -77.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034689727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.540 kcal (2) G-P(sol) polarization free energy of solvation -80.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds