Wall clock time and date at job start Tue Mar 31 2020 20:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48506 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47099 * 300.00037 * 3 2 1 6 6 H 1.48492 * 109.47344 * 60.00443 * 3 2 1 7 7 C 1.37888 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99446 * 179.72417 * 7 2 1 9 9 C 1.50697 * 119.99754 * 359.97438 * 7 2 1 10 10 C 1.53951 * 113.73977 * 276.39571 * 9 7 2 11 11 N 1.47579 * 86.11504 * 222.05048 * 10 9 7 12 12 C 1.34782 * 134.49024 * 204.64090 * 11 10 9 13 13 O 1.21280 * 119.99575 * 174.99895 * 12 11 10 14 14 C 1.50701 * 119.99905 * 354.99774 * 12 11 10 15 15 C 1.53060 * 119.24549 * 190.92081 * 14 12 11 16 16 C 1.53998 * 121.22656 * 262.42978 * 14 12 11 17 17 H 1.08999 * 121.76219 * 0.99613 * 16 14 12 18 18 C 1.54581 * 105.00775 * 137.37247 * 16 14 12 19 19 C 1.54942 * 102.85952 * 338.03785 * 18 16 14 20 20 N 1.47528 * 117.36914 * 36.98692 * 14 12 11 21 21 C 1.34777 * 127.04468 * 64.93424 * 20 14 12 22 22 O 1.21278 * 120.00124 * 5.03103 * 21 20 14 23 23 C 1.50703 * 119.99811 * 185.01869 * 21 20 14 24 24 O 1.42902 * 109.46835 * 180.02562 * 23 21 20 25 25 C 1.42902 * 113.99674 * 180.02562 * 24 23 21 26 26 C 1.52999 * 109.46992 * 180.02562 * 25 24 23 27 27 O 1.42898 * 109.47297 * 64.99892 * 26 25 24 28 28 C 1.47577 * 91.01700 * 24.64203 * 11 10 9 29 29 H 0.97002 * 119.99903 * 359.97438 * 1 2 3 30 30 H 1.08996 * 112.94579 * 48.13510 * 9 7 2 31 31 H 1.08991 * 113.76894 * 336.35474 * 10 9 7 32 32 H 1.09008 * 113.76264 * 107.75072 * 10 9 7 33 33 H 1.09002 * 117.45637 * 218.79256 * 15 14 12 34 34 H 1.09007 * 117.45760 * 3.56458 * 15 14 12 35 35 H 1.08999 * 110.73232 * 219.69514 * 18 16 14 36 36 H 1.09001 * 110.89052 * 96.45487 * 18 16 14 37 37 H 1.08996 * 110.65910 * 278.98890 * 19 18 16 38 38 H 1.09006 * 110.79830 * 155.93795 * 19 18 16 39 39 H 1.08995 * 109.47664 * 300.00297 * 23 21 20 40 40 H 1.09001 * 109.46700 * 60.01113 * 23 21 20 41 41 H 1.09004 * 109.47082 * 300.00079 * 25 24 23 42 42 H 1.08999 * 109.47234 * 60.00252 * 25 24 23 43 43 H 1.08999 * 109.47162 * 184.99473 * 26 25 24 44 44 H 1.09000 * 109.47450 * 305.00127 * 26 25 24 45 45 H 0.96705 * 114.00239 * 179.97438 * 27 26 25 46 46 H 1.08996 * 113.77244 * 221.05198 * 28 11 10 47 47 H 1.09004 * 113.86848 * 89.67326 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 0.8056 -2.9577 1.4000 11 7 1.2251 -4.3092 0.9810 12 6 0.8884 -5.5603 1.3524 13 8 1.3444 -6.5131 0.7566 14 6 -0.0547 -5.7751 2.5081 15 6 -0.2307 -7.1849 3.0775 16 6 0.4720 -6.0894 3.9206 17 1 1.5390 -6.1509 4.1346 18 6 -0.3924 -5.2294 4.8707 19 6 -0.9195 -4.1096 3.9386 20 7 -1.1675 -4.8188 2.6621 21 6 -2.1984 -4.6294 1.8150 22 8 -2.3264 -5.3467 0.8455 23 6 -3.1924 -3.5263 2.0725 24 8 -4.1839 -3.5287 1.0434 25 6 -5.1799 -2.5150 1.1936 26 6 -6.1836 -2.6118 0.0430 27 8 -6.8896 -3.8512 0.1297 28 6 2.1614 -3.7406 -0.0079 29 1 -0.4850 0.8401 0.0004 30 1 0.4581 -2.5320 -0.7477 31 1 1.4057 -2.5426 2.2096 32 1 -0.2667 -2.8643 1.5725 33 1 -1.2344 -7.4826 3.3811 34 1 0.3868 -7.9780 2.6558 35 1 0.2157 -4.8100 5.6722 36 1 -1.2181 -5.8120 5.2792 37 1 -0.1665 -3.3327 3.8069 38 1 -1.8446 -3.6849 4.3285 39 1 -3.6714 -3.6869 3.0384 40 1 -2.6763 -2.5662 2.0780 41 1 -5.6998 -2.6540 2.1415 42 1 -4.7048 -1.5340 1.1802 43 1 -6.8913 -1.7853 0.1077 44 1 -5.6526 -2.5619 -0.9076 45 1 -7.5446 -3.9806 -0.5699 46 1 2.1718 -4.2722 -0.9594 47 1 3.1605 -3.5550 0.3865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274433607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:34 Heat of formation + Delta-G solvation = -77.267238 kcal Electronic energy + Delta-G solvation = -31077.043734 eV Core-core repulsion = 26842.209300 eV Total energy + Delta-G solvation = -4234.834434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83566 -38.98008 -38.37190 -37.51000 -36.74471 -36.18347 -33.15157 -32.68375 -30.56725 -30.12135 -29.13624 -27.39422 -25.53384 -25.15498 -23.75110 -22.99051 -22.50925 -21.16758 -20.35547 -19.50168 -17.90606 -17.74100 -17.21271 -16.74142 -16.60736 -16.44042 -16.08939 -15.56703 -15.19344 -14.76539 -14.61692 -14.45731 -14.30642 -13.92982 -13.72494 -13.55164 -13.33999 -12.87633 -12.75314 -12.43729 -12.25118 -12.12538 -12.06229 -11.81416 -11.61613 -11.31656 -11.21139 -11.13564 -11.03728 -10.85455 -10.63301 -10.45536 -10.31068 -10.14364 -9.66685 -9.58536 -9.51499 -9.30385 -9.10917 -8.65403 -8.43505 -7.83656 -6.21360 -4.26780 2.46275 2.79386 2.92888 3.18382 3.27820 3.31346 3.43953 3.73797 3.84106 4.17127 4.29519 4.38961 4.47868 4.70515 4.86246 4.97392 4.99675 5.04436 5.05858 5.09780 5.11101 5.16050 5.31154 5.38113 5.46791 5.50921 5.54286 5.64750 5.69577 5.77427 5.83619 6.05572 6.10780 6.18718 6.24723 6.28094 6.40607 6.51578 6.65896 6.78904 7.07355 7.54779 7.55172 7.57837 7.76696 8.14621 8.34417 8.49648 8.76661 8.77294 9.39692 10.87978 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.007089 B = 0.005197 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.661321 B = 5385.960396 C = 8038.207682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.109 3.891 11 N -0.628 5.628 12 C 0.566 3.434 13 O -0.556 6.556 14 C 0.067 3.933 15 C -0.116 4.116 16 C -0.141 4.141 17 H 0.127 0.873 18 C -0.104 4.104 19 C 0.096 3.904 20 N -0.590 5.590 21 C 0.537 3.463 22 O -0.501 6.501 23 C 0.052 3.948 24 O -0.353 6.353 25 C 0.061 3.939 26 C 0.078 3.922 27 O -0.567 6.567 28 C 0.102 3.898 29 H 0.262 0.738 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.377 0.623 46 H 0.061 0.939 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 -3.304 11.488 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.014 3.986 10 C -0.013 4.013 11 N -0.360 5.360 12 C 0.353 3.647 13 O -0.435 6.435 14 C -0.022 4.022 15 C -0.154 4.154 16 C -0.160 4.160 17 H 0.145 0.855 18 C -0.142 4.142 19 C -0.027 4.027 20 N -0.328 5.328 21 C 0.325 3.675 22 O -0.373 6.373 23 C -0.028 4.028 24 O -0.271 6.271 25 C -0.016 4.016 26 C 0.001 3.999 27 O -0.372 6.372 28 C -0.019 4.019 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.224 0.776 46 H 0.080 0.920 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.406 -4.401 10.946 14.486 hybrid contribution 0.042 1.455 -0.183 1.468 sum -8.363 -2.946 10.763 13.945 Atomic orbital electron populations 1.69977 1.06021 1.26808 1.49403 1.25013 0.94849 0.99274 0.94326 0.86508 0.80268 0.83404 0.77674 1.19583 1.20899 1.20950 1.21012 0.93045 0.89629 1.51788 0.91834 1.20511 0.94433 0.91307 0.92334 1.23695 0.98910 0.76866 1.01834 1.50240 1.41931 1.04483 1.39380 1.18883 0.80878 0.82106 0.82804 1.90634 1.57377 1.40846 1.54632 1.21592 0.90308 0.94447 0.95851 1.23705 1.02105 0.91168 0.98467 1.24108 1.00699 1.01508 0.89703 0.85534 1.22393 0.99249 0.95657 0.96902 1.22891 1.01842 0.95525 0.82400 1.48179 1.22881 1.38635 1.23111 1.19903 0.80513 0.84959 0.82126 1.90766 1.72965 1.45984 1.27617 1.22139 0.90390 0.98210 0.92045 1.88072 1.37833 1.54103 1.47102 1.22612 0.88953 0.91681 0.98352 1.22179 0.92951 0.86188 0.98620 1.86567 1.56644 1.39033 1.54927 1.23524 0.94251 0.93528 0.90610 0.92831 0.91776 0.90991 0.92249 0.87990 0.86439 0.89068 0.90223 0.89688 0.89596 0.90746 0.89327 0.92697 0.91133 0.92073 0.92281 0.77635 0.92032 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.40 13.27 55.43 0.74 -22.66 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 19.63 29.54 -169.99 -5.02 14.61 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.52 -13.03 8.77 -34.44 -0.30 -13.34 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.03 0.80 3.62 -90.84 -0.33 0.47 16 10 C 0.11 2.31 6.49 -2.97 -0.02 2.29 16 11 N -0.63 -13.59 3.61 -178.43 -0.64 -14.23 16 12 C 0.57 12.23 7.91 -10.98 -0.09 12.15 16 13 O -0.56 -13.56 17.24 5.56 0.10 -13.47 16 14 C 0.07 1.15 2.25 -131.86 -0.30 0.85 16 15 C -0.12 -1.65 9.92 -25.61 -0.25 -1.90 16 16 C -0.14 -1.73 7.01 -88.17 -0.62 -2.34 16 17 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 18 C -0.10 -0.95 6.88 -24.88 -0.17 -1.12 16 19 C 0.10 1.07 6.45 -2.13 -0.01 1.05 16 20 N -0.59 -9.37 1.77 -156.29 -0.28 -9.65 16 21 C 0.54 10.03 7.13 -10.98 -0.08 9.95 16 22 O -0.50 -11.94 16.91 -14.35 -0.24 -12.18 16 23 C 0.05 0.79 5.45 36.01 0.20 0.98 16 24 O -0.35 -6.15 9.84 -59.73 -0.59 -6.73 16 25 C 0.06 0.77 6.32 37.16 0.23 1.01 16 26 C 0.08 0.89 7.43 37.16 0.28 1.17 16 27 O -0.57 -7.10 13.62 -40.08 -0.55 -7.64 16 28 C 0.10 2.24 8.39 -2.98 -0.02 2.21 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.06 1.75 8.12 -51.93 -0.42 1.33 16 31 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 32 H 0.06 1.26 5.96 -51.92 -0.31 0.95 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.12 1.71 7.87 -51.93 -0.41 1.30 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.01 6.92 -51.93 -0.36 0.65 16 38 H 0.09 0.72 7.22 -51.93 -0.38 0.35 16 39 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.38 2.79 9.12 45.56 0.42 3.20 16 46 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -36.65 393.33 -8.62 -45.27 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.48 Total: 5.68 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: -1.58 Total: 15.09 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.19 Total: -46.55 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.28 Total: -40.03 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.65 -8.62 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274433607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.999 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds