Wall clock time and date at job start Tue Mar 31 2020 20:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48506 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47099 * 300.00037 * 3 2 1 6 6 H 1.48492 * 109.47344 * 60.00443 * 3 2 1 7 7 C 1.37888 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99446 * 179.72417 * 7 2 1 9 9 C 1.50697 * 119.99754 * 359.97438 * 7 2 1 10 10 C 1.53951 * 113.73977 * 276.39571 * 9 7 2 11 11 N 1.47579 * 86.11504 * 222.05048 * 10 9 7 12 12 C 1.34782 * 134.49024 * 204.64090 * 11 10 9 13 13 O 1.21280 * 119.99575 * 174.99895 * 12 11 10 14 14 C 1.50701 * 119.99905 * 354.99774 * 12 11 10 15 15 C 1.53060 * 119.24549 * 190.92081 * 14 12 11 16 16 C 1.53998 * 121.22656 * 262.42978 * 14 12 11 17 17 H 1.08999 * 121.76219 * 0.99613 * 16 14 12 18 18 C 1.54581 * 105.00775 * 137.37247 * 16 14 12 19 19 C 1.54942 * 102.85952 * 338.03785 * 18 16 14 20 20 N 1.47528 * 117.36914 * 36.98692 * 14 12 11 21 21 C 1.34777 * 127.04468 * 64.93424 * 20 14 12 22 22 O 1.21278 * 120.00124 * 5.03103 * 21 20 14 23 23 C 1.50703 * 119.99811 * 185.01869 * 21 20 14 24 24 O 1.42902 * 109.46835 * 180.02562 * 23 21 20 25 25 C 1.42902 * 113.99674 * 180.02562 * 24 23 21 26 26 C 1.52999 * 109.46992 * 180.02562 * 25 24 23 27 27 O 1.42898 * 109.47297 * 64.99892 * 26 25 24 28 28 C 1.47577 * 91.01700 * 24.64203 * 11 10 9 29 29 H 0.97002 * 119.99903 * 359.97438 * 1 2 3 30 30 H 1.08996 * 112.94579 * 48.13510 * 9 7 2 31 31 H 1.08991 * 113.76894 * 336.35474 * 10 9 7 32 32 H 1.09008 * 113.76264 * 107.75072 * 10 9 7 33 33 H 1.09002 * 117.45637 * 218.79256 * 15 14 12 34 34 H 1.09007 * 117.45760 * 3.56458 * 15 14 12 35 35 H 1.08999 * 110.73232 * 219.69514 * 18 16 14 36 36 H 1.09001 * 110.89052 * 96.45487 * 18 16 14 37 37 H 1.08996 * 110.65910 * 278.98890 * 19 18 16 38 38 H 1.09006 * 110.79830 * 155.93795 * 19 18 16 39 39 H 1.08995 * 109.47664 * 300.00297 * 23 21 20 40 40 H 1.09001 * 109.46700 * 60.01113 * 23 21 20 41 41 H 1.09004 * 109.47082 * 300.00079 * 25 24 23 42 42 H 1.08999 * 109.47234 * 60.00252 * 25 24 23 43 43 H 1.08999 * 109.47162 * 184.99473 * 26 25 24 44 44 H 1.09000 * 109.47450 * 305.00127 * 26 25 24 45 45 H 0.96705 * 114.00239 * 179.97438 * 27 26 25 46 46 H 1.08996 * 113.77244 * 221.05198 * 28 11 10 47 47 H 1.09004 * 113.86848 * 89.67326 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 0.8056 -2.9577 1.4000 11 7 1.2251 -4.3092 0.9810 12 6 0.8884 -5.5603 1.3524 13 8 1.3444 -6.5131 0.7566 14 6 -0.0547 -5.7751 2.5081 15 6 -0.2307 -7.1849 3.0775 16 6 0.4720 -6.0894 3.9206 17 1 1.5390 -6.1509 4.1346 18 6 -0.3924 -5.2294 4.8707 19 6 -0.9195 -4.1096 3.9386 20 7 -1.1675 -4.8188 2.6621 21 6 -2.1984 -4.6294 1.8150 22 8 -2.3264 -5.3467 0.8455 23 6 -3.1924 -3.5263 2.0725 24 8 -4.1839 -3.5287 1.0434 25 6 -5.1799 -2.5150 1.1936 26 6 -6.1836 -2.6118 0.0430 27 8 -6.8896 -3.8512 0.1297 28 6 2.1614 -3.7406 -0.0079 29 1 -0.4850 0.8401 0.0004 30 1 0.4581 -2.5320 -0.7477 31 1 1.4057 -2.5426 2.2096 32 1 -0.2667 -2.8643 1.5725 33 1 -1.2344 -7.4826 3.3811 34 1 0.3868 -7.9780 2.6558 35 1 0.2157 -4.8100 5.6722 36 1 -1.2181 -5.8120 5.2792 37 1 -0.1665 -3.3327 3.8069 38 1 -1.8446 -3.6849 4.3285 39 1 -3.6714 -3.6869 3.0384 40 1 -2.6763 -2.5662 2.0780 41 1 -5.6998 -2.6540 2.1415 42 1 -4.7048 -1.5340 1.1802 43 1 -6.8913 -1.7853 0.1077 44 1 -5.6526 -2.5619 -0.9076 45 1 -7.5446 -3.9806 -0.5699 46 1 2.1718 -4.2722 -0.9594 47 1 3.1605 -3.5550 0.3865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274433607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:29 Heat of formation + Delta-G solvation = -104.641715 kcal Electronic energy + Delta-G solvation = -31078.230780 eV Core-core repulsion = 26842.209300 eV Total energy + Delta-G solvation = -4236.021480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13472 -40.54323 -39.69817 -38.78693 -38.37817 -37.21959 -34.66640 -34.33465 -31.67806 -31.16603 -30.76395 -28.57261 -27.33218 -26.96209 -24.77965 -24.37197 -23.45758 -22.54406 -21.44195 -21.16007 -19.39499 -18.83360 -18.66491 -18.43436 -17.78123 -17.74407 -17.37577 -16.95722 -16.63853 -16.41887 -16.16022 -15.71166 -15.52303 -15.15837 -14.88614 -14.76140 -14.66769 -14.16318 -14.07154 -13.85361 -13.69112 -13.38635 -13.30200 -13.20389 -13.08358 -12.84516 -12.81385 -12.61627 -12.25609 -12.13497 -12.08621 -11.90733 -11.54024 -11.26109 -11.19179 -11.05280 -10.91369 -10.74456 -10.72021 -10.54650 -9.80230 -9.60172 -8.15906 -6.28467 1.13514 1.42937 1.45982 1.50188 1.60271 1.62113 1.85402 2.44606 2.49397 2.78693 3.13675 3.28995 3.37227 3.42725 3.47615 3.68767 3.84295 4.00973 4.12955 4.18196 4.18450 4.21894 4.24922 4.31243 4.35919 4.44153 4.51746 4.53535 4.58162 4.60912 4.63919 4.70530 4.73992 4.80549 4.85076 4.92277 4.97340 5.03574 5.15913 5.30563 5.54608 5.78726 6.02686 6.18746 6.37013 6.78214 6.79788 6.88211 6.98785 7.08367 7.41306 8.94102 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.007089 B = 0.005197 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.661321 B = 5385.960396 C = 8038.207682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.023 3.977 10 C 0.133 3.867 11 N -0.633 5.633 12 C 0.555 3.445 13 O -0.597 6.597 14 C 0.019 3.981 15 C -0.117 4.117 16 C -0.097 4.097 17 H 0.140 0.860 18 C -0.091 4.091 19 C 0.085 3.915 20 N -0.582 5.582 21 C 0.524 3.476 22 O -0.573 6.573 23 C 0.058 3.942 24 O -0.397 6.397 25 C 0.051 3.949 26 C 0.075 3.925 27 O -0.592 6.592 28 C 0.104 3.896 29 H 0.265 0.735 30 H 0.018 0.982 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.396 0.604 46 H 0.049 0.951 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 -1.745 15.245 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.004 3.996 10 C 0.011 3.989 11 N -0.365 5.365 12 C 0.345 3.655 13 O -0.479 6.479 14 C -0.070 4.070 15 C -0.155 4.155 16 C -0.116 4.116 17 H 0.158 0.842 18 C -0.129 4.129 19 C -0.035 4.035 20 N -0.318 5.318 21 C 0.314 3.686 22 O -0.451 6.451 23 C -0.022 4.022 24 O -0.316 6.316 25 C -0.025 4.025 26 C -0.002 4.002 27 O -0.400 6.400 28 C -0.018 4.018 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.059 0.941 45 H 0.245 0.755 46 H 0.067 0.933 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.515 -2.815 14.761 17.272 hybrid contribution 0.077 0.939 -1.429 1.712 sum -8.438 -1.875 13.332 15.889 Atomic orbital electron populations 1.70087 1.07371 1.27756 1.49976 1.25737 0.95571 1.02368 0.93853 0.85479 0.79131 0.79247 0.77600 1.19018 1.21389 1.19877 1.21217 0.93265 0.90181 1.52082 0.91472 1.20369 0.93886 0.92264 0.93124 1.23438 0.98891 0.76221 1.00330 1.50286 1.41851 1.05010 1.39304 1.19775 0.80998 0.81183 0.83584 1.90589 1.59167 1.41802 1.56365 1.21616 0.91325 0.96968 0.97128 1.23759 1.03047 0.90030 0.98706 1.24442 1.01914 0.98321 0.86911 0.84249 1.22521 0.99773 0.94261 0.96301 1.23289 1.03734 0.95939 0.80570 1.48290 1.21249 1.38287 1.23972 1.20733 0.81388 0.85002 0.81443 1.90720 1.75016 1.48675 1.30641 1.22236 0.89771 0.96686 0.93459 1.88034 1.39075 1.55877 1.48625 1.22929 0.88496 0.91166 0.99894 1.22315 0.93441 0.87078 0.97402 1.86506 1.57450 1.39861 1.56185 1.23467 0.95028 0.92488 0.90781 0.92584 0.96410 0.89146 0.92553 0.86740 0.87662 0.85448 0.88102 0.90164 0.86066 0.86273 0.88881 0.90604 0.90059 0.88248 0.94098 0.75453 0.93279 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.69 13.27 21.45 0.28 -48.40 16 2 C 0.03 1.28 5.46 84.66 0.46 1.75 16 3 Si 0.96 39.69 29.54 68.60 2.03 41.72 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.53 -26.86 8.77 25.60 0.22 -26.64 16 8 H 0.07 3.30 7.81 -2.91 -0.02 3.27 16 9 C 0.02 1.14 3.62 -10.88 -0.04 1.10 16 10 C 0.13 5.66 6.49 86.48 0.56 6.23 16 11 N -0.63 -28.07 3.61 -836.81 -3.02 -31.09 16 12 C 0.55 24.67 7.91 87.66 0.69 25.36 16 13 O -0.60 -30.51 17.24 -3.03 -0.05 -30.56 16 14 C 0.02 0.64 2.25 3.02 0.01 0.65 16 15 C -0.12 -3.22 9.92 31.32 0.31 -2.91 16 16 C -0.10 -2.07 7.01 -9.21 -0.06 -2.13 16 17 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 18 C -0.09 -1.19 6.88 31.80 0.22 -0.97 16 19 C 0.08 1.57 6.45 86.73 0.56 2.13 16 20 N -0.58 -17.83 1.77 -766.77 -1.36 -19.19 16 21 C 0.52 19.82 7.13 87.66 0.62 20.44 16 22 O -0.57 -28.85 16.91 16.01 0.27 -28.58 16 23 C 0.06 1.69 5.45 71.24 0.39 2.08 16 24 O -0.40 -13.97 9.84 -125.55 -1.24 -15.21 16 25 C 0.05 1.25 6.32 71.98 0.45 1.70 16 26 C 0.08 1.67 7.43 71.98 0.53 2.20 16 27 O -0.59 -14.60 13.62 -144.34 -1.97 -16.56 16 28 C 0.10 4.71 8.39 86.48 0.73 5.44 16 29 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 30 H 0.02 1.03 8.12 -2.39 -0.02 1.02 16 31 H 0.09 3.51 8.08 -2.39 -0.02 3.50 16 32 H 0.06 2.42 5.96 -2.38 -0.01 2.41 16 33 H 0.11 2.81 8.14 -2.39 -0.02 2.80 16 34 H 0.11 3.12 7.87 -2.38 -0.02 3.10 16 35 H 0.13 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.61 6.92 -2.39 -0.02 1.60 16 38 H 0.12 1.42 7.22 -2.38 -0.02 1.40 16 39 H 0.12 2.32 7.78 -2.39 -0.02 2.30 16 40 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.40 5.71 9.12 -74.05 -0.68 5.04 16 46 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.10 3.90 8.09 -2.38 -0.02 3.88 16 Total: -1.00 -86.02 393.33 0.93 -85.10 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.31 Total: 26.34 kcal Atomic # 6 Polarization: 30.77 SS G_CDS: 5.66 Total: 36.43 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.09 Total: -98.68 kcal Atomic # 8 Polarization: -87.92 SS G_CDS: -2.98 Total: -90.91 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -86.02 0.93 -85.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274433607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.544 kcal (2) G-P(sol) polarization free energy of solvation -86.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds