Wall clock time and date at job start Tue Mar 31 2020 21:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38208 * 119.99801 * 2 1 4 4 C 1.38422 * 120.00198 * 179.97438 * 3 2 1 5 5 F 1.35103 * 120.00448 * 180.02562 * 4 3 2 6 6 C 1.38473 * 119.99725 * 359.97438 * 4 3 2 7 7 C 1.50707 * 119.99896 * 179.72423 * 6 4 3 8 8 C 1.50699 * 109.47336 * 84.99860 * 7 6 4 9 9 O 1.21289 * 119.99930 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00393 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00534 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47505 * 180.02562 * 11 10 8 13 13 H 1.08996 * 110.88884 * 51.12021 * 12 11 10 14 14 C 1.55156 * 111.00689 * 175.00235 * 12 11 10 15 15 C 1.54320 * 102.94653 * 153.57652 * 14 12 11 16 16 N 1.47027 * 107.27053 * 337.80757 * 15 14 12 17 17 C 1.36936 * 125.65238 * 178.92123 * 16 15 14 18 18 H 1.07996 * 120.00513 * 174.87320 * 17 16 15 19 19 C 1.38817 * 119.99450 * 354.86599 * 17 16 15 20 20 N 1.31618 * 120.00032 * 7.06746 * 19 17 16 21 21 Si 1.86797 * 119.99615 * 187.06331 * 19 17 16 22 22 H 1.48501 * 109.47318 * 94.98901 * 21 19 17 23 23 H 1.48503 * 109.47183 * 214.98882 * 21 19 17 24 24 H 1.48499 * 109.47507 * 334.98786 * 21 19 17 25 25 C 1.47433 * 108.70032 * 358.93942 * 16 15 14 26 26 C 1.38164 * 120.00234 * 359.97438 * 6 4 3 27 27 C 1.38421 * 120.00117 * 179.97438 * 2 1 3 28 28 F 1.35098 * 120.00348 * 0.04204 * 27 2 1 29 29 H 1.09001 * 109.47269 * 89.99632 * 1 2 3 30 30 H 1.09002 * 109.47162 * 209.99285 * 1 2 3 31 31 H 1.08999 * 109.47216 * 329.99409 * 1 2 3 32 32 H 1.08002 * 119.99801 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47230 * 204.99989 * 7 6 4 34 34 H 1.09004 * 109.47190 * 324.99757 * 7 6 4 35 35 H 0.97003 * 120.00084 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47121 * 300.00428 * 11 10 8 37 37 H 1.09004 * 109.46868 * 59.99933 * 11 10 8 38 38 H 1.09004 * 110.72006 * 271.94072 * 14 12 11 39 39 H 1.09003 * 110.71649 * 35.03361 * 14 12 11 40 40 H 1.08995 * 109.88417 * 97.22264 * 15 14 12 41 41 H 1.09003 * 109.88693 * 218.23614 * 15 14 12 42 42 H 0.97007 * 119.99398 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.36735 * 265.28996 * 25 16 15 44 44 H 1.09003 * 110.36515 * 142.96881 * 25 16 15 45 45 H 1.07994 * 119.99960 * 179.97438 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5822 1.1970 0.0005 5 9 4.2577 2.3671 0.0011 6 6 4.2746 -0.0022 0.0016 7 6 5.7816 -0.0021 -0.0041 8 6 6.2894 0.1261 1.4090 9 8 5.5047 0.2088 2.3302 10 7 7.6152 0.1479 1.6493 11 6 8.1089 0.2731 3.0230 12 6 9.6388 0.2730 3.0172 13 1 10.0248 1.0045 2.3073 14 6 10.2004 0.5295 4.4406 15 6 11.5815 -0.1576 4.3964 16 7 11.5371 -1.1579 3.3198 17 6 12.5728 -1.9700 2.9416 18 1 12.4160 -2.7317 2.1923 19 6 13.8244 -1.8138 3.5213 20 7 13.9836 -0.9832 4.5298 21 14 15.2827 -2.7825 2.8699 22 1 16.0267 -1.9557 1.8860 23 1 16.1820 -3.1405 3.9961 24 1 14.7989 -4.0216 2.2098 25 6 10.1928 -1.1416 2.7145 26 6 3.5838 -1.1987 0.0027 27 6 2.1991 -1.1987 0.0005 28 9 1.5237 -2.3688 0.0002 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3633 0.8899 0.5139 32 1 1.6579 2.1322 0.0004 33 1 6.1434 -0.9348 -0.4369 34 1 6.1427 0.8379 -0.5975 35 1 8.2429 0.0806 0.9127 36 1 7.7476 1.2062 3.4552 37 1 7.7473 -0.5664 3.6169 38 1 10.3072 1.5983 4.6263 39 1 9.5621 0.0703 5.1955 40 1 12.3559 0.5799 4.1855 41 1 11.7839 -0.6449 5.3502 42 1 14.8582 -0.8745 4.9351 43 1 9.5611 -1.9025 3.1729 44 1 10.2595 -1.3007 1.6382 45 1 4.1239 -2.1340 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663604233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:08 Heat of formation + Delta-G solvation = -88.808621 kcal Electronic energy + Delta-G solvation = -28304.415329 eV Core-core repulsion = 23957.992908 eV Total energy + Delta-G solvation = -4346.422421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.23718 -49.20688 -40.12699 -39.04239 -37.64420 -34.72961 -34.21190 -32.54668 -30.66742 -30.47393 -29.62127 -28.26376 -26.24006 -25.20565 -23.54406 -23.38513 -21.80367 -20.68108 -20.00854 -19.69107 -17.79870 -17.56462 -17.45623 -17.24147 -16.71517 -16.12164 -16.04183 -15.59787 -15.41976 -14.82523 -14.66585 -14.62674 -14.53596 -13.84191 -13.74227 -13.63644 -13.47763 -13.44030 -13.33562 -12.98686 -12.40988 -12.35399 -12.21932 -11.95476 -11.83990 -11.74441 -11.41741 -11.37816 -10.91873 -10.82575 -10.43596 -10.17983 -10.04970 -9.92673 -9.80620 -9.69396 -9.32803 -9.00144 -8.76511 -8.59658 -6.85139 -5.74571 -3.07001 0.57369 0.66335 2.58168 2.85036 3.30023 3.38232 3.43378 3.45653 3.78028 3.81669 4.06540 4.21997 4.38915 4.47432 4.69864 4.75071 4.94538 5.00202 5.08086 5.10990 5.13865 5.20659 5.28561 5.41741 5.47726 5.51797 5.55370 5.66669 5.70895 5.75613 5.78515 5.87616 6.02376 6.04989 6.32603 6.40191 6.43447 6.47850 6.51962 6.66433 6.88824 7.48515 7.53917 7.61802 7.80825 8.18146 8.23913 9.19649 9.80380 10.46877 11.37543 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.001947 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.365378 B =14375.865082 C =14908.839309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.128 4.128 4 C 0.110 3.890 5 F -0.131 7.131 6 C -0.074 4.074 7 C -0.106 4.106 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.723 5.723 11 C 0.133 3.867 12 C -0.117 4.117 13 H 0.080 0.920 14 C -0.135 4.135 15 C 0.176 3.824 16 N -0.606 5.606 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.142 3.858 26 C -0.108 4.108 27 C 0.088 3.912 28 F -0.134 7.134 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.403 0.597 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.252 0.748 43 H 0.018 0.982 44 H 0.036 0.964 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.855 4.790 -11.870 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.146 4.146 4 C 0.091 3.909 5 F -0.110 7.110 6 C -0.075 4.075 7 C -0.146 4.146 8 C 0.299 3.701 9 O -0.414 6.414 10 N -0.374 5.374 11 C 0.009 3.991 12 C -0.137 4.137 13 H 0.098 0.902 14 C -0.174 4.174 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.016 3.984 26 C -0.127 4.127 27 C 0.068 3.932 28 F -0.112 7.112 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.163 0.837 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.237 0.763 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.054 0.946 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.175 4.807 -11.113 27.935 hybrid contribution 1.283 -0.525 -0.579 1.502 sum -23.892 4.283 -11.692 26.942 Atomic orbital electron populations 1.20760 0.89398 1.03835 1.03138 1.19732 0.97343 0.91049 1.01200 1.20824 0.91933 0.98851 1.03028 1.17418 0.89886 0.81043 1.02559 1.91517 1.80204 1.45576 1.93668 1.19105 0.95077 0.91459 1.01859 1.20643 0.91377 1.06303 0.96249 1.20301 0.82582 0.76667 0.90573 1.90730 1.55574 1.49228 1.45871 1.46049 1.06566 1.74368 1.10438 1.21415 0.93838 1.01846 0.81992 1.22613 0.91893 0.99817 0.99384 0.90184 1.22853 0.99661 1.00345 0.94517 1.21150 0.90513 0.91089 0.92096 1.44487 1.07772 1.43242 1.37771 1.19051 0.87444 1.10690 1.18665 0.90461 1.24837 0.97626 0.99644 0.98333 1.69983 1.22415 1.39914 1.24352 0.86117 0.82741 0.79103 0.77924 1.21624 1.21764 1.20644 1.21586 0.87847 0.92687 0.96283 1.20854 0.92187 0.98776 1.00862 1.17391 0.89748 0.81144 1.04885 1.91499 1.80121 1.45669 1.93951 0.90369 0.90728 0.90581 0.83690 0.86893 0.87160 0.76290 0.91670 0.91317 0.91991 0.92218 0.93413 0.94079 0.93737 0.96390 0.94570 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 9.83 36.00 0.35 -0.32 16 2 C -0.09 -0.78 5.88 -104.57 -0.62 -1.40 16 3 C -0.13 -1.10 9.68 -39.52 -0.38 -1.49 16 4 C 0.11 1.15 7.24 -39.43 -0.29 0.86 16 5 F -0.13 -1.48 16.57 2.25 0.04 -1.44 16 6 C -0.07 -0.74 4.38 -104.56 -0.46 -1.20 16 7 C -0.11 -0.93 5.60 -29.03 -0.16 -1.09 16 8 C 0.51 6.46 7.82 -10.99 -0.09 6.37 16 9 O -0.54 -8.94 16.03 5.55 0.09 -8.85 16 10 N -0.72 -8.61 5.50 -60.30 -0.33 -8.94 16 11 C 0.13 1.87 5.13 -4.04 -0.02 1.85 16 12 C -0.12 -1.89 3.05 -88.47 -0.27 -2.16 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C -0.13 -2.43 6.42 -24.90 -0.16 -2.59 16 15 C 0.18 4.22 5.38 -3.06 -0.02 4.20 16 16 N -0.61 -15.23 3.40 -170.06 -0.58 -15.80 16 17 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 18 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 19 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 20 N -0.92 -26.91 10.36 55.49 0.57 -26.34 16 21 Si 0.91 21.91 29.56 -169.99 -5.02 16.89 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 C 0.14 2.79 6.65 -2.52 -0.02 2.77 16 26 C -0.11 -1.03 9.66 -39.52 -0.38 -1.41 16 27 C 0.09 0.85 7.24 -39.43 -0.29 0.56 16 28 F -0.13 -1.34 16.47 2.25 0.04 -1.30 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.45 7.64 -51.93 -0.40 0.05 16 31 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.11 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.11 0.79 7.80 -51.93 -0.40 0.38 16 35 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 40 H 0.05 1.26 7.30 -51.93 -0.38 0.88 16 41 H 0.04 1.10 7.61 -51.93 -0.40 0.70 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -33.51 380.75 -9.00 -42.51 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.51 Total: -0.60 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.04 Total: -1.87 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.33 Total: -51.08 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.07 Total: -2.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.51 -9.00 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663604233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.301 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds