Wall clock time and date at job start Tue Mar 31 2020 21:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38206 * 119.99825 * 2 1 4 4 C 1.38438 * 120.00044 * 179.76521 * 3 2 1 5 5 F 1.35101 * 120.00327 * 180.29637 * 4 3 2 6 6 C 1.38467 * 119.99434 * 0.53034 * 4 3 2 7 7 C 1.50701 * 119.99839 * 179.74332 * 6 4 3 8 8 C 1.50703 * 109.47355 * 279.72699 * 7 6 4 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.09006 * 110.88461 * 302.56835 * 12 11 10 14 14 C 1.55160 * 111.00790 * 178.65015 * 12 11 10 15 15 C 1.54325 * 102.94367 * 206.42085 * 14 12 11 16 16 N 1.47026 * 107.26952 * 22.19305 * 15 14 12 17 17 C 1.36931 * 125.64760 * 181.09678 * 16 15 14 18 18 H 1.07998 * 120.00502 * 179.97438 * 17 16 15 19 19 C 1.38819 * 120.00037 * 359.94888 * 17 16 15 20 20 N 1.31618 * 119.99589 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46988 * 90.00519 * 21 19 17 23 23 H 1.48500 * 109.47095 * 210.00326 * 21 19 17 24 24 H 1.48500 * 109.47561 * 330.00260 * 21 19 17 25 25 C 1.47425 * 108.70312 * 1.05661 * 16 15 14 26 26 C 1.38160 * 120.00242 * 359.46880 * 6 4 3 27 27 C 1.38424 * 120.00420 * 180.02562 * 2 1 3 28 28 F 1.35107 * 119.99926 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47834 * 269.97790 * 1 2 3 30 30 H 1.09007 * 109.47444 * 29.98006 * 1 2 3 31 31 H 1.09000 * 109.47012 * 149.97721 * 1 2 3 32 32 H 1.08001 * 120.00358 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47477 * 159.72545 * 7 6 4 34 34 H 1.09002 * 109.47412 * 39.72803 * 7 6 4 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 37 37 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 38 38 H 1.09000 * 110.71586 * 324.78231 * 14 12 11 39 39 H 1.09002 * 110.72148 * 88.05624 * 14 12 11 40 40 H 1.08989 * 109.88272 * 262.77214 * 15 14 12 41 41 H 1.09002 * 110.00775 * 141.67533 * 15 14 12 42 42 H 0.97005 * 119.99489 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.36573 * 217.03678 * 25 16 15 44 44 H 1.08997 * 110.45777 * 94.76399 * 25 16 15 45 45 H 1.08010 * 120.00061 * 180.27845 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1969 0.0000 4 6 3.5823 1.1970 0.0049 5 9 4.2578 2.3670 0.0110 6 6 4.2746 -0.0022 -0.0013 7 6 5.7816 -0.0022 -0.0018 8 6 6.2835 0.2448 -1.4011 9 8 5.4950 0.4046 -2.3087 10 7 7.6085 0.2871 -1.6442 11 6 8.0963 0.5333 -3.0035 12 6 9.6263 0.5382 -3.0031 13 1 10.0123 1.2870 -2.3115 14 6 10.1821 0.7628 -4.4342 15 6 11.5656 0.0813 -4.3786 16 7 11.5281 -0.8935 -3.2786 17 6 12.5679 -1.6927 -2.8848 18 1 12.4394 -2.3792 -2.0610 19 6 13.7870 -1.6211 -3.5448 20 7 13.9436 -0.7845 -4.5487 21 14 15.2052 -2.7120 -3.0080 22 1 15.1561 -3.9926 -3.7584 23 1 16.4916 -2.0242 -3.2863 24 1 15.0954 -2.9865 -1.5527 25 6 10.1860 -0.8671 -2.6691 26 6 3.5838 -1.1987 -0.0013 27 6 2.1991 -1.1987 -0.0005 28 9 1.5236 -2.3688 -0.0005 29 1 -0.3635 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6579 2.1323 0.0004 33 1 6.1451 -0.9679 0.3494 34 1 6.1452 0.7849 0.6589 35 1 8.2390 0.1589 -0.9183 36 1 7.7356 -0.2529 -3.6668 37 1 7.7300 1.4989 -3.3517 38 1 9.5445 0.2811 -5.1755 39 1 10.2848 1.8272 -4.6454 40 1 12.3383 0.8260 -4.1879 41 1 11.7677 -0.4298 -5.3200 42 1 14.7957 -0.7342 -5.0097 43 1 10.2569 -1.0005 -1.5896 44 1 9.5542 -1.6407 -3.1055 45 1 4.1238 -2.1341 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663604234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:17 Heat of formation + Delta-G solvation = -88.673962 kcal Electronic energy + Delta-G solvation = -28340.722981 eV Core-core repulsion = 23994.306399 eV Total energy + Delta-G solvation = -4346.416582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.23359 -49.18539 -40.12062 -39.04133 -37.64675 -34.72068 -34.20967 -32.54002 -30.66301 -30.46472 -29.62143 -28.24977 -26.23095 -25.22185 -23.53523 -23.38970 -21.80677 -20.67787 -19.95810 -19.70202 -17.79356 -17.56779 -17.44561 -17.23200 -16.72017 -16.11638 -16.00882 -15.58330 -15.42329 -14.84982 -14.66418 -14.61232 -14.53971 -13.84290 -13.73860 -13.62588 -13.47634 -13.42801 -13.34211 -12.98423 -12.40971 -12.35525 -12.20786 -11.93992 -11.82555 -11.72540 -11.41973 -11.37585 -10.91943 -10.81412 -10.45435 -10.18083 -10.04657 -9.91126 -9.81651 -9.67671 -9.32247 -8.99711 -8.75640 -8.61894 -6.85417 -5.73207 -3.06875 0.58094 0.66842 2.59034 2.85681 3.30338 3.38363 3.43087 3.45210 3.78739 3.82900 4.07171 4.22268 4.39316 4.47324 4.70099 4.76491 4.94936 5.00763 5.08404 5.11323 5.14168 5.22631 5.28875 5.40283 5.48317 5.52235 5.55723 5.66826 5.71414 5.76006 5.79192 5.87752 6.03216 6.04659 6.32198 6.41915 6.44061 6.46871 6.51762 6.66088 6.88783 7.49345 7.54027 7.61577 7.81102 8.18877 8.24233 9.20049 9.80536 10.46589 11.38490 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022914 B = 0.001966 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.679227 B =14236.121537 C =14835.495947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.128 4.128 4 C 0.113 3.887 5 F -0.131 7.131 6 C -0.074 4.074 7 C -0.106 4.106 8 C 0.514 3.486 9 O -0.537 6.537 10 N -0.723 5.723 11 C 0.133 3.867 12 C -0.118 4.118 13 H 0.080 0.920 14 C -0.135 4.135 15 C 0.177 3.823 16 N -0.606 5.606 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.142 3.858 26 C -0.109 4.109 27 C 0.087 3.913 28 F -0.134 7.134 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.252 0.748 43 H 0.035 0.965 44 H 0.019 0.981 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.739 4.140 11.811 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.147 4.147 4 C 0.093 3.907 5 F -0.109 7.109 6 C -0.076 4.076 7 C -0.145 4.145 8 C 0.299 3.701 9 O -0.414 6.414 10 N -0.374 5.374 11 C 0.010 3.990 12 C -0.138 4.138 13 H 0.098 0.902 14 C -0.174 4.174 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.016 3.984 26 C -0.128 4.128 27 C 0.068 3.932 28 F -0.113 7.113 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.036 0.964 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.057 4.218 11.069 27.716 hybrid contribution 1.255 -0.630 0.510 1.494 sum -23.802 3.588 11.578 26.711 Atomic orbital electron populations 1.20759 0.89406 1.03830 1.03133 1.19730 0.97337 0.91050 1.01198 1.20831 0.91947 0.98848 1.03031 1.17415 0.89867 0.81067 1.02305 1.91518 1.80211 1.45567 1.93616 1.19108 0.95085 0.91470 1.01916 1.20639 0.91396 1.06077 0.96432 1.20297 0.82594 0.76962 0.90262 1.90727 1.55267 1.49172 1.46240 1.46038 1.06575 1.72881 1.11914 1.21403 0.93877 1.01298 0.82463 1.22619 0.91928 0.99855 0.99361 0.90203 1.22859 0.99714 1.00394 0.94413 1.21153 0.90419 0.91397 0.91822 1.44478 1.07526 1.45075 1.36179 1.19045 0.89294 1.14509 1.12913 0.90486 1.24821 0.97892 0.99590 0.98252 1.69968 1.24232 1.38929 1.23764 0.86112 0.81929 0.79750 0.77909 1.21607 1.21674 1.20714 1.21557 0.87883 0.92780 0.96171 1.20860 0.92195 0.98744 1.01032 1.17388 0.89748 0.81138 1.04963 1.91501 1.80123 1.45670 1.93965 0.90372 0.90583 0.90736 0.83700 0.86918 0.87150 0.76269 0.91355 0.91688 0.92208 0.91958 0.93559 0.93867 0.93739 0.94682 0.96352 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 9.83 36.00 0.35 -0.33 16 2 C -0.09 -0.79 5.88 -104.57 -0.62 -1.40 16 3 C -0.13 -1.12 9.68 -39.52 -0.38 -1.50 16 4 C 0.11 1.19 7.14 -39.42 -0.28 0.91 16 5 F -0.13 -1.51 16.66 2.25 0.04 -1.47 16 6 C -0.07 -0.75 4.42 -104.57 -0.46 -1.21 16 7 C -0.11 -0.93 5.56 -29.03 -0.16 -1.10 16 8 C 0.51 6.51 7.82 -10.98 -0.09 6.42 16 9 O -0.54 -8.96 15.96 5.55 0.09 -8.87 16 10 N -0.72 -8.70 5.41 -60.30 -0.33 -9.03 16 11 C 0.13 1.88 5.12 -4.04 -0.02 1.86 16 12 C -0.12 -1.91 3.10 -88.47 -0.27 -2.18 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C -0.13 -2.44 6.42 -24.89 -0.16 -2.60 16 15 C 0.18 4.24 5.38 -3.06 -0.02 4.22 16 16 N -0.61 -15.21 3.39 -170.07 -0.58 -15.79 16 17 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -26.97 10.31 55.49 0.57 -26.40 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.14 2.78 6.41 -2.53 -0.02 2.76 16 26 C -0.11 -1.03 9.65 -39.53 -0.38 -1.41 16 27 C 0.09 0.84 7.24 -39.43 -0.29 0.55 16 28 F -0.13 -1.34 16.47 2.25 0.04 -1.30 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.07 0.45 7.64 -51.93 -0.40 0.06 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.11 0.70 8.00 -51.93 -0.42 0.29 16 34 H 0.11 0.79 7.94 -51.93 -0.41 0.38 16 35 H 0.40 3.99 8.34 -40.82 -0.34 3.65 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.22 7.38 -51.94 -0.38 0.84 16 41 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 45 H 0.15 1.12 8.04 -52.48 -0.42 0.69 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -33.50 380.45 -9.01 -42.51 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.51 Total: -0.47 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -3.04 Total: -1.83 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.33 Total: -51.22 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.77 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.50 -9.01 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663604234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.163 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds