Wall clock time and date at job start Tue Mar 31 2020 20:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35236 * 126.06837 * 2 1 4 4 C 1.40416 * 107.86453 * 180.13744 * 3 2 1 5 5 N 1.40162 * 125.97122 * 179.82945 * 4 3 2 6 6 C 1.34780 * 119.99946 * 359.71911 * 5 4 3 7 7 O 1.21290 * 119.99860 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99836 * 180.02562 * 6 5 4 9 9 N 1.46894 * 109.47071 * 180.02562 * 8 6 5 10 10 C 1.46903 * 111.00532 * 66.04368 * 9 8 6 11 11 C 1.46903 * 111.00051 * 189.99720 * 9 8 6 12 12 H 1.08997 * 108.82824 * 305.36094 * 11 9 8 13 13 C 1.52336 * 108.86864 * 63.89539 * 11 9 8 14 14 C 1.54254 * 112.59049 * 120.67558 * 13 11 9 15 15 S 1.83957 * 102.57976 * 24.52864 * 14 13 11 16 16 C 1.54260 * 108.86856 * 186.83043 * 11 9 8 17 17 N 1.31214 * 108.05469 * 359.56917 * 4 3 2 18 18 N 1.34967 * 126.06696 * 179.65859 * 2 1 3 19 19 C 1.46501 * 125.98143 * 0.05665 * 18 2 1 20 20 C 1.50702 * 109.46854 * 269.98774 * 19 18 2 21 21 H 1.07997 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99823 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00142 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99746 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46669 * 90.00377 * 24 22 20 26 26 H 1.48504 * 109.46710 * 209.99620 * 24 22 20 27 27 H 1.48494 * 109.47429 * 330.00175 * 24 22 20 28 28 H 1.09006 * 109.47291 * 270.34145 * 1 2 3 29 29 H 1.08995 * 109.47321 * 30.34306 * 1 2 3 30 30 H 1.09000 * 109.47452 * 150.34195 * 1 2 3 31 31 H 1.07998 * 126.07052 * 359.96890 * 3 2 1 32 32 H 0.96990 * 119.99821 * 179.71934 * 5 4 3 33 33 H 1.08997 * 109.47516 * 59.99399 * 8 6 5 34 34 H 1.09006 * 109.46908 * 299.99709 * 8 6 5 35 35 H 1.08998 * 109.47148 * 190.26710 * 10 9 8 36 36 H 1.09001 * 109.46772 * 310.26526 * 10 9 8 37 37 H 1.09000 * 109.47096 * 70.26152 * 10 9 8 38 38 H 1.09001 * 108.86664 * 241.49838 * 13 11 9 39 39 H 1.09004 * 108.86649 * 359.97438 * 13 11 9 40 40 H 1.08996 * 110.79075 * 142.80135 * 14 13 11 41 41 H 1.09000 * 110.78677 * 266.06380 * 14 13 11 42 42 H 1.08994 * 110.79173 * 333.07000 * 16 11 9 43 43 H 1.09010 * 110.78300 * 96.52375 * 16 11 9 44 44 H 1.09009 * 109.46799 * 29.98068 * 19 18 2 45 45 H 1.08997 * 109.47650 * 149.98009 * 19 18 2 46 46 H 0.96994 * 119.99903 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 -0.0032 5 7 4.7735 1.4749 -0.0076 6 6 4.6367 2.8157 -0.0149 7 8 3.5301 3.3123 -0.0180 8 6 5.8585 3.6977 -0.0202 9 7 5.4449 5.1072 -0.0271 10 6 4.7632 5.4620 1.2249 11 6 6.5925 5.9914 -0.2704 12 1 7.3671 5.7728 0.4645 13 6 7.1423 5.7129 -1.6635 14 6 7.1147 6.9594 -2.5717 15 16 7.1403 8.3407 -1.3570 16 6 6.1395 7.4558 -0.0973 17 7 3.6337 -0.6576 0.0043 18 7 2.3016 -1.0910 0.0065 19 6 1.8500 -2.4846 0.0136 20 6 1.6944 -2.9549 1.4369 21 1 1.9106 -2.2830 2.2543 22 6 1.2759 -4.2430 1.6955 23 7 1.0121 -5.0610 0.7001 24 14 1.0837 -4.8261 3.4597 25 1 -0.2990 -4.5484 3.9248 26 1 1.3456 -6.2862 3.5297 27 1 2.0513 -4.1073 4.3269 28 1 -0.3634 0.0061 1.0277 29 1 -0.3634 0.8868 -0.5191 30 1 -0.3634 -0.8930 -0.5085 31 1 1.9719 2.1211 -0.0005 32 1 5.6583 1.0777 -0.0055 33 1 6.4536 3.4889 -0.9092 34 1 6.4542 3.4986 0.8707 35 1 4.3091 6.4478 1.1246 36 1 3.9888 4.7253 1.4383 37 1 5.4859 5.4761 2.0408 38 1 8.1715 5.3652 -1.5733 39 1 6.5455 4.9275 -2.1275 40 1 7.9960 6.9912 -3.2121 41 1 6.2033 6.9826 -3.1691 42 1 5.0751 7.5590 -0.3078 43 1 6.3737 7.8173 0.9041 44 1 0.8916 -2.5586 -0.5003 45 1 2.5849 -3.1073 -0.4965 46 1 0.7181 -5.9672 0.8820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329019332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:43 Heat of formation + Delta-G solvation = 59.443848 kcal Electronic energy + Delta-G solvation = -26636.662181 eV Core-core repulsion = 22882.801607 eV Total energy + Delta-G solvation = -3753.860574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83043 -39.84746 -38.28101 -34.91189 -33.88988 -33.41031 -31.57031 -30.96462 -30.25446 -28.15790 -26.90677 -26.39072 -25.97035 -23.70170 -22.96330 -21.42722 -20.11695 -19.79812 -19.19320 -17.52227 -16.86025 -16.78039 -16.63567 -16.21660 -15.64105 -15.40115 -14.98344 -14.81686 -14.51141 -14.29799 -14.05964 -13.90368 -13.49743 -13.28348 -12.98298 -12.61282 -12.51089 -12.45010 -12.31212 -12.21068 -12.04354 -11.88790 -11.70303 -11.59256 -11.43038 -11.34755 -11.11130 -10.85226 -10.45263 -10.35478 -10.25895 -9.94027 -9.57559 -9.54862 -8.73216 -8.66800 -8.11151 -7.96982 -7.48791 -6.28119 -4.35728 1.46624 1.86369 2.28074 2.62032 2.87471 3.18951 3.25556 3.30593 3.45971 3.67889 3.86037 3.96545 4.27692 4.41588 4.42106 4.53692 4.66218 4.72914 4.86666 4.92578 5.03765 5.05690 5.15308 5.21219 5.30743 5.32027 5.41287 5.47309 5.50846 5.68072 5.86249 5.90090 6.08801 6.21101 6.41644 6.44031 6.53455 6.60823 6.71812 6.90565 7.02731 7.41646 7.62075 7.64760 7.86158 8.02074 8.23355 8.62001 8.72217 9.30586 10.79178 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028959 B = 0.001931 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.656160 B =14494.117653 C =14545.716413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.290 4.290 4 C 0.264 3.736 5 N -0.633 5.633 6 C 0.518 3.482 7 O -0.497 6.497 8 C 0.036 3.964 9 N -0.518 5.518 10 C 0.013 3.987 11 C 0.085 3.915 12 H 0.057 0.943 13 C -0.127 4.127 14 C -0.060 4.060 15 S -0.298 6.298 16 C -0.061 4.061 17 N -0.321 5.321 18 N -0.316 5.316 19 C 0.258 3.742 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.409 0.591 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.149 21.795 -3.495 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.011 3.989 5 N -0.281 5.281 6 C 0.303 3.697 7 O -0.369 6.369 8 C -0.095 4.095 9 N -0.243 5.243 10 C -0.134 4.134 11 C -0.025 4.025 12 H 0.075 0.925 13 C -0.166 4.166 14 C -0.208 4.208 15 S -0.073 6.073 16 C -0.209 4.209 17 N -0.152 5.152 18 N -0.099 5.099 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.197 1.197 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.177 0.823 32 H 0.244 0.756 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.043 0.957 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.156 22.007 -3.950 24.987 hybrid contribution 0.060 -1.313 1.645 2.105 sum 11.216 20.694 -2.305 23.651 Atomic orbital electron populations 1.20334 0.87884 1.02854 1.03163 1.21076 0.94927 0.87191 1.00836 1.21235 0.89695 0.99763 1.21391 1.18968 0.87188 0.89561 1.03142 1.42463 1.07555 1.05094 1.73017 1.20363 0.91333 0.81275 0.76725 1.90637 1.26480 1.73416 1.46327 1.21979 0.94996 0.88811 1.03756 1.61891 1.25132 1.00523 1.36736 1.22645 0.99067 1.03572 0.88154 1.22280 0.91656 0.91405 0.97189 0.92519 1.22132 1.02269 0.98590 0.93638 1.24096 1.05999 0.92379 0.98300 1.88016 1.71135 1.28371 1.19741 1.24261 1.02674 0.94016 0.99988 1.77255 0.99970 1.08546 1.29425 1.48990 1.00961 1.07800 1.52123 1.19694 0.95982 0.71315 0.98943 1.21307 1.46795 0.97975 0.91326 0.91794 1.24931 0.94685 0.96051 0.98148 1.69916 1.44857 1.07012 1.31145 0.86354 0.78672 0.77904 0.83747 1.20278 1.20861 1.19735 0.90433 0.90800 0.90857 0.82334 0.75600 0.87295 0.91292 0.90801 0.89032 0.95747 0.90350 0.89054 0.87727 0.88823 0.87695 0.87816 0.92786 0.93010 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.00 0.36 -1.05 16 2 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.79 9.52 -39.83 -0.38 -6.17 16 4 C 0.26 5.17 8.11 -154.39 -1.25 3.92 16 5 N -0.63 -9.05 5.45 -11.13 -0.06 -9.11 16 6 C 0.52 6.71 7.42 -10.99 -0.08 6.62 16 7 O -0.50 -8.05 11.53 5.55 0.06 -7.98 16 8 C 0.04 0.30 5.16 -4.98 -0.03 0.27 16 9 N -0.52 -4.53 4.22 -235.95 -1.00 -5.53 16 10 C 0.01 0.12 8.62 60.07 0.52 0.64 16 11 C 0.08 0.58 2.46 -67.39 -0.17 0.42 16 12 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 13 C -0.13 -0.77 5.33 -26.41 -0.14 -0.91 16 14 C -0.06 -0.38 7.46 37.81 0.28 -0.10 16 15 S -0.30 -2.51 23.26 -107.50 -2.50 -5.01 16 16 C -0.06 -0.44 5.66 37.82 0.21 -0.22 16 17 N -0.32 -7.25 12.59 31.44 0.40 -6.86 16 18 N -0.32 -7.40 3.59 -58.33 -0.21 -7.61 16 19 C 0.26 6.56 5.99 -5.19 -0.03 6.53 16 20 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 21 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 22 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 24 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.25 7.07 -51.93 -0.37 0.88 16 31 H 0.16 3.08 5.92 -52.49 -0.31 2.77 16 32 H 0.41 4.56 8.82 -40.82 -0.36 4.20 16 33 H 0.11 0.68 6.29 -51.93 -0.33 0.35 16 34 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.07 0.60 6.54 -51.93 -0.34 0.26 16 36 H 0.09 1.07 5.79 -51.93 -0.30 0.77 16 37 H 0.02 0.19 8.12 -51.93 -0.42 -0.24 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.59 6.50 -51.93 -0.34 0.26 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.82 7.10 -51.93 -0.37 0.45 16 43 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.05 1.36 7.04 -51.92 -0.37 0.99 16 45 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -32.35 380.92 -10.38 -42.73 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.84 Total: 3.84 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.69 Total: -2.01 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.13 Total: -53.21 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.06 Total: -7.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.50 Total: -5.01 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.35 -10.38 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329019332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.178 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds