Wall clock time and date at job start Tue Mar 31 2020 20:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35236 * 126.06837 * 2 1 4 4 C 1.40416 * 107.86453 * 180.13744 * 3 2 1 5 5 N 1.40162 * 125.97122 * 179.82945 * 4 3 2 6 6 C 1.34780 * 119.99946 * 359.71911 * 5 4 3 7 7 O 1.21290 * 119.99860 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99836 * 180.02562 * 6 5 4 9 9 N 1.46894 * 109.47071 * 180.02562 * 8 6 5 10 10 C 1.46903 * 111.00532 * 66.04368 * 9 8 6 11 11 C 1.46903 * 111.00051 * 189.99720 * 9 8 6 12 12 H 1.08997 * 108.82824 * 305.36094 * 11 9 8 13 13 C 1.52336 * 108.86864 * 63.89539 * 11 9 8 14 14 C 1.54254 * 112.59049 * 120.67558 * 13 11 9 15 15 S 1.83957 * 102.57976 * 24.52864 * 14 13 11 16 16 C 1.54260 * 108.86856 * 186.83043 * 11 9 8 17 17 N 1.31214 * 108.05469 * 359.56917 * 4 3 2 18 18 N 1.34967 * 126.06696 * 179.65859 * 2 1 3 19 19 C 1.46501 * 125.98143 * 0.05665 * 18 2 1 20 20 C 1.50702 * 109.46854 * 269.98774 * 19 18 2 21 21 H 1.07997 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99823 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00142 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99746 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46669 * 90.00377 * 24 22 20 26 26 H 1.48504 * 109.46710 * 209.99620 * 24 22 20 27 27 H 1.48494 * 109.47429 * 330.00175 * 24 22 20 28 28 H 1.09006 * 109.47291 * 270.34145 * 1 2 3 29 29 H 1.08995 * 109.47321 * 30.34306 * 1 2 3 30 30 H 1.09000 * 109.47452 * 150.34195 * 1 2 3 31 31 H 1.07998 * 126.07052 * 359.96890 * 3 2 1 32 32 H 0.96990 * 119.99821 * 179.71934 * 5 4 3 33 33 H 1.08997 * 109.47516 * 59.99399 * 8 6 5 34 34 H 1.09006 * 109.46908 * 299.99709 * 8 6 5 35 35 H 1.08998 * 109.47148 * 190.26710 * 10 9 8 36 36 H 1.09001 * 109.46772 * 310.26526 * 10 9 8 37 37 H 1.09000 * 109.47096 * 70.26152 * 10 9 8 38 38 H 1.09001 * 108.86664 * 241.49838 * 13 11 9 39 39 H 1.09004 * 108.86649 * 359.97438 * 13 11 9 40 40 H 1.08996 * 110.79075 * 142.80135 * 14 13 11 41 41 H 1.09000 * 110.78677 * 266.06380 * 14 13 11 42 42 H 1.08994 * 110.79173 * 333.07000 * 16 11 9 43 43 H 1.09010 * 110.78300 * 96.52375 * 16 11 9 44 44 H 1.09009 * 109.46799 * 29.98068 * 19 18 2 45 45 H 1.08997 * 109.47650 * 149.98009 * 19 18 2 46 46 H 0.96994 * 119.99903 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 -0.0032 5 7 4.7735 1.4749 -0.0076 6 6 4.6367 2.8157 -0.0149 7 8 3.5301 3.3123 -0.0180 8 6 5.8585 3.6977 -0.0202 9 7 5.4449 5.1072 -0.0271 10 6 4.7632 5.4620 1.2249 11 6 6.5925 5.9914 -0.2704 12 1 7.3671 5.7728 0.4645 13 6 7.1423 5.7129 -1.6635 14 6 7.1147 6.9594 -2.5717 15 16 7.1403 8.3407 -1.3570 16 6 6.1395 7.4558 -0.0973 17 7 3.6337 -0.6576 0.0043 18 7 2.3016 -1.0910 0.0065 19 6 1.8500 -2.4846 0.0136 20 6 1.6944 -2.9549 1.4369 21 1 1.9106 -2.2830 2.2543 22 6 1.2759 -4.2430 1.6955 23 7 1.0121 -5.0610 0.7001 24 14 1.0837 -4.8261 3.4597 25 1 -0.2990 -4.5484 3.9248 26 1 1.3456 -6.2862 3.5297 27 1 2.0513 -4.1073 4.3269 28 1 -0.3634 0.0061 1.0277 29 1 -0.3634 0.8868 -0.5191 30 1 -0.3634 -0.8930 -0.5085 31 1 1.9719 2.1211 -0.0005 32 1 5.6583 1.0777 -0.0055 33 1 6.4536 3.4889 -0.9092 34 1 6.4542 3.4986 0.8707 35 1 4.3091 6.4478 1.1246 36 1 3.9888 4.7253 1.4383 37 1 5.4859 5.4761 2.0408 38 1 8.1715 5.3652 -1.5733 39 1 6.5455 4.9275 -2.1275 40 1 7.9960 6.9912 -3.2121 41 1 6.2033 6.9826 -3.1691 42 1 5.0751 7.5590 -0.3078 43 1 6.3737 7.8173 0.9041 44 1 0.8916 -2.5586 -0.5003 45 1 2.5849 -3.1073 -0.4965 46 1 0.7181 -5.9672 0.8820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329019332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:43 Heat of formation + Delta-G solvation = 38.793088 kcal Electronic energy + Delta-G solvation = -26637.557665 eV Core-core repulsion = 22882.801607 eV Total energy + Delta-G solvation = -3754.756058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29510 -40.92687 -39.08873 -36.30446 -35.29062 -34.50514 -33.09349 -32.64231 -30.98984 -29.04047 -28.36605 -27.86763 -26.92697 -24.96715 -24.16276 -22.63247 -21.24895 -20.79313 -20.51174 -18.80818 -18.26676 -17.74123 -17.59328 -17.38309 -17.05248 -16.60088 -16.20218 -15.94640 -15.65682 -15.49312 -15.04622 -14.80702 -14.53575 -14.35739 -14.11459 -13.94627 -13.78930 -13.71211 -13.55161 -13.19502 -13.13104 -12.87970 -12.84675 -12.72140 -12.66499 -12.43866 -12.29215 -12.23663 -12.05202 -11.83429 -11.52595 -11.31111 -10.97164 -10.74435 -10.67975 -9.57375 -9.36025 -9.11551 -8.75323 -8.33138 -6.50828 0.90461 0.94278 1.27054 1.36649 1.37727 1.40462 1.45866 1.50855 2.23613 2.24938 2.37594 2.90074 2.96473 3.44440 3.56110 3.90977 3.92380 3.96579 4.11315 4.17804 4.23032 4.27928 4.35156 4.44647 4.51060 4.52608 4.64187 4.71027 4.73146 4.80621 4.84689 4.89023 4.98873 4.99758 5.01723 5.02288 5.11656 5.20062 5.28481 5.53285 5.80701 5.82457 5.97362 6.00352 6.26196 6.34261 6.61705 7.03170 7.18606 7.20085 8.72673 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028959 B = 0.001931 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.656160 B =14494.117653 C =14545.716413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.085 3.915 3 C -0.298 4.298 4 C 0.275 3.725 5 N -0.626 5.626 6 C 0.518 3.482 7 O -0.529 6.529 8 C 0.046 3.954 9 N -0.532 5.532 10 C 0.017 3.983 11 C 0.089 3.911 12 H 0.071 0.929 13 C -0.126 4.126 14 C -0.051 4.051 15 S -0.344 6.344 16 C -0.052 4.052 17 N -0.360 5.360 18 N -0.344 5.344 19 C 0.275 3.725 20 C -0.552 4.552 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.276 1.276 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.166 0.834 32 H 0.425 0.575 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.051 0.949 45 H 0.024 0.976 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.275 22.783 -2.814 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C -0.328 4.328 4 C 0.021 3.979 5 N -0.277 5.277 6 C 0.305 3.695 7 O -0.403 6.403 8 C -0.085 4.085 9 N -0.258 5.258 10 C -0.131 4.131 11 C -0.021 4.021 12 H 0.089 0.911 13 C -0.165 4.165 14 C -0.198 4.198 15 S -0.119 6.119 16 C -0.200 4.200 17 N -0.190 5.190 18 N -0.126 5.126 19 C 0.156 3.844 20 C -0.590 4.590 21 H 0.067 0.933 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.190 1.190 26 H -0.199 1.199 27 H -0.201 1.201 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.184 0.816 32 H 0.262 0.738 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.132 0.868 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.307 23.024 -3.282 26.313 hybrid contribution -0.262 -1.475 1.376 2.034 sum 12.045 21.550 -1.906 24.761 Atomic orbital electron populations 1.20458 0.85536 1.04128 1.03880 1.21748 0.96609 0.86605 0.99591 1.21422 0.90023 0.99768 1.21637 1.19335 0.88921 0.89147 1.00476 1.42660 1.06833 1.05248 1.72948 1.21335 0.92514 0.80738 0.74904 1.90620 1.28374 1.73776 1.47511 1.22019 0.92625 0.87541 1.06303 1.61841 1.26300 1.00940 1.36727 1.22545 0.98792 1.02810 0.88954 1.22322 0.91137 0.90488 0.98116 0.91118 1.22154 1.03321 0.98116 0.92889 1.24163 1.06518 0.91278 0.97885 1.88191 1.71473 1.30624 1.21574 1.24240 1.01714 0.94144 0.99891 1.77174 0.99955 1.10165 1.31740 1.48764 1.01839 1.07461 1.54538 1.19233 0.94884 0.72498 0.97758 1.21420 1.47486 0.98354 0.91739 0.93289 1.25738 0.93990 0.95919 1.02255 1.69999 1.45045 1.07442 1.33101 0.85356 0.78951 0.77567 0.78611 1.18982 1.19912 1.20067 0.89885 0.87649 0.91378 0.81623 0.73751 0.84496 0.88652 0.90412 0.91910 0.94224 0.88431 0.89183 0.86286 0.89234 0.88693 0.86837 0.93124 0.95760 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 10.11 71.23 0.72 -2.01 16 2 C 0.08 3.54 6.92 41.38 0.29 3.83 16 3 C -0.30 -11.87 9.52 22.11 0.21 -11.66 16 4 C 0.28 10.75 8.11 133.33 1.08 11.83 16 5 N -0.63 -17.06 5.45 -307.51 -1.68 -18.74 16 6 C 0.52 12.49 7.42 87.65 0.65 13.14 16 7 O -0.53 -16.69 11.53 -3.06 -0.04 -16.73 16 8 C 0.05 0.62 5.16 85.56 0.44 1.06 16 9 N -0.53 -7.98 4.22 -900.40 -3.80 -11.78 16 10 C 0.02 0.27 8.62 127.69 1.10 1.37 16 11 C 0.09 0.96 2.46 45.12 0.11 1.07 16 12 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 13 C -0.13 -1.12 5.33 30.80 0.16 -0.96 16 14 C -0.05 -0.54 7.46 72.41 0.54 0.00 16 15 S -0.34 -5.36 23.26 -56.49 -1.31 -6.67 16 16 C -0.05 -0.65 5.66 72.41 0.41 -0.24 16 17 N -0.36 -16.55 12.59 -54.45 -0.69 -17.24 16 18 N -0.34 -16.50 3.59 -338.44 -1.22 -17.72 16 19 C 0.28 14.50 5.99 85.63 0.51 15.01 16 20 C -0.55 -30.79 9.39 25.60 0.24 -30.55 16 21 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 22 C 0.02 1.20 5.46 84.66 0.46 1.66 16 23 N -0.92 -51.58 13.29 21.45 0.28 -51.30 16 24 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 29 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.07 2.33 7.07 -2.39 -0.02 2.31 16 31 H 0.17 6.37 5.92 -2.91 -0.02 6.35 16 32 H 0.42 8.69 8.82 -92.72 -0.82 7.87 16 33 H 0.14 1.13 6.29 -2.39 -0.02 1.12 16 34 H 0.10 0.87 8.12 -2.38 -0.02 0.85 16 35 H 0.08 1.17 6.54 -2.39 -0.02 1.15 16 36 H 0.06 1.41 5.79 -2.39 -0.01 1.40 16 37 H 0.04 0.51 8.12 -2.39 -0.02 0.49 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.09 0.87 6.50 -2.38 -0.02 0.86 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.39 7.10 -2.39 -0.02 1.37 16 43 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.05 2.65 7.04 -2.38 -0.02 2.63 16 45 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -71.56 380.92 0.71 -70.85 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.19 Total: 20.95 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 6.93 Total: 3.56 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -7.09 Total: -116.77 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.04 Total: -16.73 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.31 Total: -6.67 kcal Total: -71.56 0.71 -70.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329019332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.644 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds