Wall clock time and date at job start Tue Mar 31 2020 20:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39763 * 125.83772 * 2 1 4 4 C 1.36110 * 107.82492 * 179.72941 * 3 2 1 5 5 N 1.39475 * 126.21390 * 180.26904 * 4 3 2 6 6 C 1.34776 * 120.00002 * 0.14040 * 5 4 3 7 7 O 1.21293 * 120.00329 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99881 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47054 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99963 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00084 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99826 * 179.97438 * 10 9 8 13 13 N 1.31622 * 119.99836 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00012 * 359.97438 * 12 10 9 15 15 H 1.48492 * 109.47564 * 90.00053 * 14 12 10 16 16 H 1.48505 * 109.47014 * 210.00315 * 14 12 10 17 17 H 1.48503 * 109.47376 * 329.99922 * 14 12 10 18 18 N 1.35259 * 107.56858 * 0.38657 * 4 3 2 19 19 C 1.46506 * 126.04368 * 179.87631 * 18 4 3 20 20 C 1.53125 * 109.51935 * 239.39959 * 19 18 4 21 21 C 1.53041 * 109.27222 * 182.44153 * 20 19 18 22 22 N 1.46852 * 109.52183 * 59.18487 * 21 20 19 23 23 C 1.46897 * 110.99573 * 174.16060 * 22 21 20 24 24 C 1.46848 * 111.19434 * 298.24735 * 22 21 20 25 25 C 1.53036 * 109.51913 * 61.74922 * 24 22 21 26 26 N 1.30851 * 125.84194 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46954 * 270.01299 * 1 2 3 28 28 H 1.09002 * 109.47450 * 30.00781 * 1 2 3 29 29 H 1.08999 * 109.47431 * 150.01497 * 1 2 3 30 30 H 1.07996 * 126.08701 * 359.94072 * 3 2 1 31 31 H 0.96999 * 120.00100 * 180.14719 * 5 4 3 32 32 H 1.09002 * 109.47093 * 299.99910 * 8 6 5 33 33 H 1.08994 * 109.47167 * 60.00083 * 8 6 5 34 34 H 0.97003 * 119.99972 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.52354 * 359.59197 * 19 18 4 36 36 H 1.09000 * 109.50303 * 302.38201 * 20 19 18 37 37 H 1.08996 * 109.50302 * 62.50615 * 20 19 18 38 38 H 1.08998 * 109.46700 * 299.16576 * 21 20 19 39 39 H 1.09002 * 109.45768 * 179.19230 * 21 20 19 40 40 H 1.09003 * 109.47338 * 184.21049 * 23 22 21 41 41 H 1.09006 * 109.47259 * 304.19872 * 23 22 21 42 42 H 1.08999 * 109.47588 * 64.20250 * 23 22 21 43 43 H 1.08997 * 109.46957 * 301.73431 * 24 22 21 44 44 H 1.09000 * 109.45921 * 181.76227 * 24 22 21 45 45 H 1.09004 * 109.50218 * 180.87601 * 25 24 22 46 46 H 1.08996 * 109.53740 * 60.77833 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7121 0.0061 5 7 4.7512 1.5275 0.0135 6 6 4.6156 2.8684 0.0179 7 8 3.5095 3.3662 0.0160 8 6 5.8382 3.7493 0.0253 9 16 5.3301 5.4866 0.0306 10 6 6.9097 6.2673 0.0380 11 1 7.8083 5.6681 0.0385 12 6 6.9992 7.6525 0.0430 13 7 8.1792 8.2357 0.0490 14 14 5.4451 8.6888 0.0414 15 1 5.0285 8.9586 1.4409 16 1 5.7083 9.9746 -0.6534 17 1 4.3629 7.9571 -0.6648 18 7 3.6091 -0.6404 0.0011 19 6 4.7870 -1.5116 0.0023 20 6 4.7662 -2.4019 -1.2433 21 6 5.9658 -3.3514 -1.2056 22 7 5.9015 -4.1755 0.0082 23 6 6.9605 -5.1936 0.0099 24 6 5.9678 -3.3453 1.2176 25 6 4.7683 -2.3956 1.2524 26 7 2.2731 -1.0607 0.0005 27 1 -0.3633 0.0002 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3634 -0.8901 -0.5136 30 1 1.9901 2.1597 -0.0009 31 1 5.6357 1.1295 0.0153 32 1 6.4304 3.5416 0.9166 33 1 6.4364 3.5481 -0.8634 34 1 8.2417 9.2037 0.0522 35 1 5.6908 -0.9022 0.0007 36 1 3.8434 -2.9819 -1.2607 37 1 4.8225 -1.7796 -2.1364 38 1 6.8885 -2.7711 -1.2021 39 1 5.9460 -3.9966 -2.0840 40 1 6.8446 -5.8370 0.8820 41 1 6.8884 -5.7944 -0.8968 42 1 7.9342 -4.7051 0.0455 43 1 6.8904 -2.7649 1.2098 44 1 5.9495 -3.9860 2.0993 45 1 4.8260 -1.7688 2.1423 46 1 3.8453 -2.9749 1.2746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430486541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:54 Heat of formation + Delta-G solvation = 48.425398 kcal Electronic energy + Delta-G solvation = -26773.724244 eV Core-core repulsion = 23019.385874 eV Total energy + Delta-G solvation = -3754.338370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64122 -39.54184 -39.08460 -35.28140 -34.57518 -32.51920 -31.84909 -31.39850 -30.33987 -28.56878 -28.08721 -26.12994 -25.69852 -23.66119 -23.16325 -22.14652 -20.85837 -19.99617 -19.55309 -18.05485 -17.58991 -16.56063 -16.21302 -15.89339 -15.55447 -15.26425 -15.08003 -14.94473 -14.92806 -14.32324 -14.08274 -13.98405 -13.71148 -13.32242 -13.02563 -13.00281 -12.93453 -12.86372 -12.72012 -12.46076 -12.34187 -12.03570 -11.68245 -11.66051 -11.35236 -11.17036 -11.09398 -11.06637 -10.78761 -10.75857 -10.44015 -9.94456 -9.66047 -9.07844 -8.82875 -8.79306 -8.62899 -8.03875 -7.02839 -6.36436 -4.09978 1.74134 2.00044 2.64469 2.66023 3.07769 3.11316 3.28124 3.41830 3.44548 3.48967 4.04703 4.25678 4.26805 4.36440 4.48168 4.61693 4.71367 4.80350 4.81423 4.92061 4.99602 5.00076 5.02661 5.11314 5.16601 5.21272 5.34546 5.42331 5.43003 5.45385 5.55156 5.59673 5.62539 5.76974 5.77276 5.81165 5.81907 5.91715 6.02683 6.23584 6.54162 6.56449 6.83584 6.99084 7.26067 7.81903 7.86249 8.12759 8.33461 9.09146 10.72630 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.002612 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.883994 B =10716.646687 C =12373.254765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.082 3.918 3 C -0.280 4.280 4 C 0.313 3.687 5 N -0.656 5.656 6 C 0.537 3.463 7 O -0.480 6.480 8 C -0.122 4.122 9 S -0.132 6.132 10 C -0.525 4.525 11 H 0.089 0.911 12 C 0.097 3.903 13 N -0.878 5.878 14 Si 0.856 3.144 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.235 1.235 18 N -0.385 5.385 19 C 0.167 3.833 20 C -0.123 4.123 21 C 0.058 3.942 22 N -0.544 5.544 23 C 0.025 3.975 24 C 0.058 3.942 25 C -0.123 4.123 26 N -0.290 5.290 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.173 0.827 31 H 0.407 0.593 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.272 0.728 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.026 0.974 43 H 0.037 0.963 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 -25.826 -0.189 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.311 4.311 4 C 0.094 3.906 5 N -0.305 5.305 6 C 0.323 3.677 7 O -0.350 6.350 8 C -0.272 4.272 9 S 0.094 5.906 10 C -0.672 4.672 11 H 0.107 0.893 12 C -0.112 4.112 13 N -0.514 5.514 14 Si 0.681 3.319 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.159 1.159 18 N -0.173 5.173 19 C 0.064 3.936 20 C -0.161 4.161 21 C -0.071 4.071 22 N -0.269 5.269 23 C -0.123 4.123 24 C -0.070 4.070 25 C -0.162 4.162 26 N -0.113 5.113 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.190 0.810 31 H 0.242 0.758 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.297 -26.313 -0.195 27.307 hybrid contribution 2.427 1.149 0.048 2.685 sum -4.870 -25.164 -0.147 25.631 Atomic orbital electron populations 1.20147 0.86699 1.03135 1.02839 1.22217 0.96893 0.90675 0.98620 1.21586 0.88878 1.01305 1.19321 1.18085 0.89103 0.82164 1.01230 1.43097 1.06904 1.06171 1.74311 1.20446 0.91754 0.80277 0.75182 1.90660 1.26650 1.72885 1.44846 1.23259 0.97420 1.00207 1.06343 1.84853 1.14028 0.94249 1.97456 1.22283 0.90788 0.94859 1.59280 0.89278 1.24707 0.96532 0.96941 0.93060 1.69928 1.23077 1.10752 1.47663 0.86745 0.84159 0.80983 0.80037 1.19114 1.19826 1.15859 1.48612 1.05755 1.01661 1.61225 1.21236 0.83974 0.91019 0.97335 1.21930 1.00410 0.97327 0.96443 1.22086 0.96629 0.95088 0.93249 1.61933 1.47416 1.15428 1.02076 1.22359 0.91902 0.95015 1.03051 1.22079 0.96621 0.94994 0.93336 1.21936 1.00416 0.97388 0.96420 1.77312 0.84796 1.21491 1.27714 0.90637 0.90328 0.91159 0.80982 0.75752 0.87935 0.87889 0.91824 0.89489 0.89147 0.90849 0.94512 0.89856 0.91152 0.91178 0.95501 0.94503 0.89859 0.90865 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.44 36.00 0.38 -0.32 16 2 C 0.08 1.14 7.21 -82.44 -0.59 0.54 16 3 C -0.28 -4.39 9.58 -39.78 -0.38 -4.77 16 4 C 0.31 4.52 7.66 -153.16 -1.17 3.35 16 5 N -0.66 -8.66 5.42 -11.46 -0.06 -8.73 16 6 C 0.54 9.04 7.81 -10.99 -0.09 8.95 16 7 O -0.48 -9.67 12.99 5.55 0.07 -9.59 16 8 C -0.12 -2.17 6.16 36.01 0.22 -1.95 16 9 S -0.13 -3.18 18.55 -107.50 -1.99 -5.17 16 10 C -0.52 -14.55 10.04 30.94 0.31 -14.24 16 11 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 12 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 13 N -0.88 -25.87 13.97 55.49 0.78 -25.09 16 14 Si 0.86 21.16 27.74 -169.99 -4.71 16.45 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.23 -5.76 6.74 56.52 0.38 -5.38 16 18 N -0.39 -4.87 3.29 -53.78 -0.18 -5.05 16 19 C 0.17 1.57 3.03 -67.80 -0.21 1.36 16 20 C -0.12 -1.06 5.64 -26.65 -0.15 -1.21 16 21 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 22 N -0.54 -4.03 4.91 -242.95 -1.19 -5.22 16 23 C 0.02 0.14 9.59 60.06 0.58 0.72 16 24 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 25 C -0.12 -1.07 5.64 -26.65 -0.15 -1.22 16 26 N -0.29 -4.04 12.42 33.65 0.42 -3.62 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.17 3.00 5.83 -52.49 -0.31 2.69 16 31 H 0.41 3.94 7.53 -40.82 -0.31 3.63 16 32 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 33 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 35 H 0.09 0.69 6.82 -51.93 -0.35 0.33 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 42 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.08 0.53 8.12 -51.93 -0.42 0.10 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -33.35 386.12 -9.75 -43.11 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.30 Total: 2.45 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.39 Total: -5.35 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.24 Total: -47.71 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -1.99 Total: -5.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.35 -9.75 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430486541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.532 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds