Wall clock time and date at job start Tue Mar 31 2020 20:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39763 * 125.83772 * 2 1 4 4 C 1.36110 * 107.82492 * 179.72941 * 3 2 1 5 5 N 1.39475 * 126.21390 * 180.26904 * 4 3 2 6 6 C 1.34776 * 120.00002 * 0.14040 * 5 4 3 7 7 O 1.21293 * 120.00329 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99881 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47054 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99963 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00084 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99826 * 179.97438 * 10 9 8 13 13 N 1.31622 * 119.99836 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00012 * 359.97438 * 12 10 9 15 15 H 1.48492 * 109.47564 * 90.00053 * 14 12 10 16 16 H 1.48505 * 109.47014 * 210.00315 * 14 12 10 17 17 H 1.48503 * 109.47376 * 329.99922 * 14 12 10 18 18 N 1.35259 * 107.56858 * 0.38657 * 4 3 2 19 19 C 1.46506 * 126.04368 * 179.87631 * 18 4 3 20 20 C 1.53125 * 109.51935 * 239.39959 * 19 18 4 21 21 C 1.53041 * 109.27222 * 182.44153 * 20 19 18 22 22 N 1.46852 * 109.52183 * 59.18487 * 21 20 19 23 23 C 1.46897 * 110.99573 * 174.16060 * 22 21 20 24 24 C 1.46848 * 111.19434 * 298.24735 * 22 21 20 25 25 C 1.53036 * 109.51913 * 61.74922 * 24 22 21 26 26 N 1.30851 * 125.84194 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46954 * 270.01299 * 1 2 3 28 28 H 1.09002 * 109.47450 * 30.00781 * 1 2 3 29 29 H 1.08999 * 109.47431 * 150.01497 * 1 2 3 30 30 H 1.07996 * 126.08701 * 359.94072 * 3 2 1 31 31 H 0.96999 * 120.00100 * 180.14719 * 5 4 3 32 32 H 1.09002 * 109.47093 * 299.99910 * 8 6 5 33 33 H 1.08994 * 109.47167 * 60.00083 * 8 6 5 34 34 H 0.97003 * 119.99972 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.52354 * 359.59197 * 19 18 4 36 36 H 1.09000 * 109.50303 * 302.38201 * 20 19 18 37 37 H 1.08996 * 109.50302 * 62.50615 * 20 19 18 38 38 H 1.08998 * 109.46700 * 299.16576 * 21 20 19 39 39 H 1.09002 * 109.45768 * 179.19230 * 21 20 19 40 40 H 1.09003 * 109.47338 * 184.21049 * 23 22 21 41 41 H 1.09006 * 109.47259 * 304.19872 * 23 22 21 42 42 H 1.08999 * 109.47588 * 64.20250 * 23 22 21 43 43 H 1.08997 * 109.46957 * 301.73431 * 24 22 21 44 44 H 1.09000 * 109.45921 * 181.76227 * 24 22 21 45 45 H 1.09004 * 109.50218 * 180.87601 * 25 24 22 46 46 H 1.08996 * 109.53740 * 60.77833 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7121 0.0061 5 7 4.7512 1.5275 0.0135 6 6 4.6156 2.8684 0.0179 7 8 3.5095 3.3662 0.0160 8 6 5.8382 3.7493 0.0253 9 16 5.3301 5.4866 0.0306 10 6 6.9097 6.2673 0.0380 11 1 7.8083 5.6681 0.0385 12 6 6.9992 7.6525 0.0430 13 7 8.1792 8.2357 0.0490 14 14 5.4451 8.6888 0.0414 15 1 5.0285 8.9586 1.4409 16 1 5.7083 9.9746 -0.6534 17 1 4.3629 7.9571 -0.6648 18 7 3.6091 -0.6404 0.0011 19 6 4.7870 -1.5116 0.0023 20 6 4.7662 -2.4019 -1.2433 21 6 5.9658 -3.3514 -1.2056 22 7 5.9015 -4.1755 0.0082 23 6 6.9605 -5.1936 0.0099 24 6 5.9678 -3.3453 1.2176 25 6 4.7683 -2.3956 1.2524 26 7 2.2731 -1.0607 0.0005 27 1 -0.3633 0.0002 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3634 -0.8901 -0.5136 30 1 1.9901 2.1597 -0.0009 31 1 5.6357 1.1295 0.0153 32 1 6.4304 3.5416 0.9166 33 1 6.4364 3.5481 -0.8634 34 1 8.2417 9.2037 0.0522 35 1 5.6908 -0.9022 0.0007 36 1 3.8434 -2.9819 -1.2607 37 1 4.8225 -1.7796 -2.1364 38 1 6.8885 -2.7711 -1.2021 39 1 5.9460 -3.9966 -2.0840 40 1 6.8446 -5.8370 0.8820 41 1 6.8884 -5.7944 -0.8968 42 1 7.9342 -4.7051 0.0455 43 1 6.8904 -2.7649 1.2098 44 1 5.9495 -3.9860 2.0993 45 1 4.8260 -1.7688 2.1423 46 1 3.8453 -2.9749 1.2746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430486541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:54 Heat of formation + Delta-G solvation = 26.374500 kcal Electronic energy + Delta-G solvation = -26774.680443 eV Core-core repulsion = 23019.385874 eV Total energy + Delta-G solvation = -3755.294568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.71910 -40.71360 -39.85918 -36.34731 -35.51300 -34.67367 -32.75043 -32.01685 -31.64461 -29.46428 -29.20272 -27.85074 -26.78705 -24.28134 -23.94033 -23.27936 -21.74239 -21.17711 -20.54790 -19.71686 -18.80102 -17.89848 -17.13631 -17.06762 -16.92912 -16.25319 -16.22087 -15.98808 -15.83190 -15.57971 -15.25709 -15.06875 -14.84880 -14.73538 -14.19034 -14.06498 -13.79961 -13.56629 -13.50917 -13.44441 -13.34997 -13.16205 -13.02595 -12.72601 -12.63320 -12.35336 -12.29114 -12.02112 -11.90402 -11.88353 -11.66492 -11.51683 -11.17214 -11.04443 -10.56393 -9.78785 -9.33338 -9.21407 -9.00079 -8.51755 -6.22947 0.57786 0.75620 1.14808 1.32305 1.45121 1.48057 1.57357 1.89870 2.02072 2.24446 2.64852 2.87017 2.90226 3.25847 3.47628 3.59347 3.69910 3.88417 4.02441 4.11452 4.15193 4.18569 4.24628 4.38375 4.42017 4.48436 4.48866 4.59934 4.67114 4.76149 4.76626 4.82940 4.84914 4.85902 4.90477 5.01354 5.04988 5.05314 5.18338 5.24278 5.70569 5.76899 5.91118 6.04288 6.05541 6.12184 6.15704 6.73365 6.87168 6.93598 8.60346 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.002612 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.883994 B =10716.646687 C =12373.254765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.077 3.923 3 C -0.306 4.306 4 C 0.307 3.693 5 N -0.633 5.633 6 C 0.544 3.456 7 O -0.516 6.516 8 C -0.106 4.106 9 S -0.165 6.165 10 C -0.528 4.528 11 H 0.066 0.934 12 C 0.046 3.954 13 N -0.916 5.916 14 Si 0.911 3.089 15 H -0.263 1.263 16 H -0.261 1.261 17 H -0.235 1.235 18 N -0.376 5.376 19 C 0.157 3.843 20 C -0.115 4.115 21 C 0.062 3.938 22 N -0.559 5.559 23 C 0.025 3.975 24 C 0.062 3.938 25 C -0.115 4.115 26 N -0.300 5.300 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.426 0.574 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.277 0.723 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 -27.536 -0.202 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.337 4.337 4 C 0.086 3.914 5 N -0.284 5.284 6 C 0.331 3.669 7 O -0.389 6.389 8 C -0.257 4.257 9 S 0.061 5.939 10 C -0.676 4.676 11 H 0.085 0.915 12 C -0.159 4.159 13 N -0.554 5.554 14 Si 0.733 3.267 15 H -0.188 1.188 16 H -0.186 1.186 17 H -0.158 1.158 18 N -0.163 5.163 19 C 0.056 3.944 20 C -0.154 4.154 21 C -0.066 4.066 22 N -0.285 5.285 23 C -0.122 4.122 24 C -0.066 4.066 25 C -0.154 4.154 26 N -0.124 5.124 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.170 0.830 31 H 0.265 0.735 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.120 -28.082 -0.210 28.971 hybrid contribution 2.416 1.482 0.058 2.835 sum -4.704 -26.599 -0.152 27.013 Atomic orbital electron populations 1.20262 0.84482 1.04054 1.03893 1.22684 0.98446 0.89847 0.97950 1.21572 0.90158 1.01036 1.20952 1.18050 0.88936 0.83008 1.01394 1.42664 1.07748 1.04902 1.73066 1.20152 0.90677 0.81189 0.74909 1.90674 1.27704 1.73811 1.46738 1.23197 0.98179 0.95795 1.08522 1.84794 1.12302 0.99167 1.97622 1.22443 0.91760 0.95108 1.58262 0.91535 1.25532 0.99184 0.98266 0.92952 1.70007 1.24935 1.11389 1.49057 0.85909 0.80747 0.79797 0.80214 1.18754 1.18568 1.15836 1.48847 1.06194 1.01220 1.60034 1.21626 0.83416 0.91228 0.98142 1.21842 1.00391 0.97221 0.95913 1.22058 0.96018 0.94966 0.93572 1.61921 1.48515 1.15871 1.02158 1.22386 0.91558 0.94654 1.03616 1.22051 0.96014 0.94869 0.93663 1.21847 1.00390 0.97284 0.95890 1.77293 0.85452 1.21749 1.27907 0.89436 0.89659 0.89958 0.82994 0.73475 0.85753 0.85715 0.91377 0.87428 0.91153 0.91001 0.93429 0.89071 0.90681 0.90650 0.94953 0.93418 0.89094 0.91018 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.44 71.23 0.74 -0.57 16 2 C 0.08 2.09 7.21 43.07 0.31 2.40 16 3 C -0.31 -9.57 9.58 22.14 0.21 -9.36 16 4 C 0.31 8.51 7.66 131.32 1.01 9.51 16 5 N -0.63 -15.51 5.42 -308.56 -1.67 -17.18 16 6 C 0.54 17.55 7.81 87.66 0.68 18.23 16 7 O -0.52 -20.63 12.99 -3.07 -0.04 -20.67 16 8 C -0.11 -3.58 6.16 71.24 0.44 -3.14 16 9 S -0.17 -7.84 18.55 -56.49 -1.05 -8.89 16 10 C -0.53 -29.32 10.04 67.96 0.68 -28.63 16 11 H 0.07 3.87 8.03 -2.91 -0.02 3.85 16 12 C 0.05 2.63 5.50 84.86 0.47 3.10 16 13 N -0.92 -54.37 13.97 21.65 0.30 -54.07 16 14 Si 0.91 43.63 27.74 68.60 1.90 45.53 16 15 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 16 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.23 -11.14 6.74 99.48 0.67 -10.47 16 18 N -0.38 -9.05 3.29 -324.06 -1.07 -10.12 16 19 C 0.16 2.66 3.03 45.07 0.14 2.79 16 20 C -0.12 -1.82 5.64 30.65 0.17 -1.64 16 21 C 0.06 0.73 5.46 86.33 0.47 1.20 16 22 N -0.56 -7.06 4.91 -922.57 -4.53 -11.60 16 23 C 0.03 0.23 9.59 127.69 1.22 1.45 16 24 C 0.06 0.74 5.46 86.33 0.47 1.21 16 25 C -0.12 -1.82 5.64 30.65 0.17 -1.65 16 26 N -0.30 -8.17 12.42 -47.45 -0.59 -8.75 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.15 5.43 5.83 -2.91 -0.02 5.41 16 31 H 0.43 6.95 7.53 -92.71 -0.70 6.25 16 32 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.12 3.73 8.14 -2.40 -0.02 3.71 16 34 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.11 1.37 6.82 -2.39 -0.02 1.35 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.59 8.09 -2.38 -0.02 0.57 16 42 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.09 0.95 8.12 -2.39 -0.02 0.93 16 45 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -72.54 386.12 0.70 -71.83 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.25 Total: 19.01 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 7.20 Total: -5.10 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -7.56 Total: -101.71 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.90 Total: 45.53 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.05 Total: -8.89 kcal Total: -72.54 0.70 -71.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430486541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.209 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds