Wall clock time and date at job start Tue Mar 31 2020 20:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39758 * 125.83398 * 2 1 4 4 C 1.36108 * 107.82615 * 179.97438 * 3 2 1 5 5 N 1.39480 * 126.21779 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99819 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99801 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.46758 * 299.99577 * 8 6 5 10 10 C 1.52999 * 109.47333 * 59.99933 * 8 6 5 11 11 N 1.46902 * 109.46823 * 179.97438 * 8 6 5 12 12 C 1.46474 * 110.99897 * 300.97613 * 11 8 6 13 13 C 1.53250 * 109.85683 * 162.23768 * 12 11 8 14 14 S 1.81894 * 108.50775 * 62.00455 * 13 12 11 15 15 C 1.81899 * 101.91500 * 308.69245 * 14 13 12 16 16 C 1.46473 * 110.99959 * 175.00238 * 11 8 6 17 17 N 1.35265 * 107.56962 * 359.97438 * 4 3 2 18 18 C 1.46495 * 126.05131 * 179.73218 * 17 4 3 19 19 C 1.50704 * 109.46917 * 90.00227 * 18 17 4 20 20 H 1.07996 * 119.99789 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99975 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99911 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46993 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47356 * 119.99801 * 23 21 19 26 26 H 1.48499 * 109.46972 * 240.00022 * 23 21 19 27 27 N 1.30845 * 125.84205 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47130 * 90.00205 * 1 2 3 29 29 H 1.09002 * 109.47175 * 209.99555 * 1 2 3 30 30 H 1.09001 * 109.47036 * 329.99975 * 1 2 3 31 31 H 1.07998 * 126.09135 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99909 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.46847 * 300.00138 * 10 8 6 34 34 H 1.08995 * 109.46911 * 59.99389 * 10 8 6 35 35 H 1.08995 * 109.47086 * 179.97438 * 10 8 6 36 36 H 1.09002 * 109.40633 * 282.35649 * 12 11 8 37 37 H 1.09001 * 109.40579 * 42.12128 * 12 11 8 38 38 H 1.09002 * 109.62877 * 302.30045 * 13 12 11 39 39 H 1.09000 * 109.79432 * 181.81030 * 13 12 11 40 40 H 1.08992 * 109.63271 * 291.60479 * 15 14 13 41 41 H 1.09002 * 109.79781 * 171.10050 * 15 14 13 42 42 H 1.09005 * 109.40138 * 317.87944 * 16 11 8 43 43 H 1.08994 * 109.41148 * 77.64043 * 16 11 8 44 44 H 1.09000 * 109.47596 * 210.00544 * 18 17 4 45 45 H 1.09004 * 109.47027 * 330.01061 * 18 17 4 46 46 H 0.97005 * 120.00533 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 0.0006 5 7 4.7512 1.5277 0.0003 6 6 4.6156 2.8686 -0.0002 7 8 3.5095 3.3663 -0.0007 8 6 5.8383 3.7495 0.0001 9 1 6.4330 3.5453 0.8904 10 6 6.6742 3.4622 -1.2487 11 7 5.4258 5.1595 -0.0011 12 6 4.6037 5.4649 -1.1743 13 6 3.8325 6.7690 -0.9442 14 16 5.0323 8.1189 -0.7277 15 6 6.1309 7.4427 0.5547 16 6 6.5858 6.0458 0.1182 17 7 3.6093 -0.6403 0.0015 18 6 4.7870 -1.5115 -0.0032 19 6 5.1971 -1.8093 1.4161 20 1 4.6363 -1.3918 2.2391 21 6 6.2884 -2.6149 1.6637 22 7 6.9710 -3.1237 0.6615 23 14 6.7963 -2.9846 3.4230 24 1 5.8715 -2.2975 4.3600 25 1 6.7402 -4.4500 3.6569 26 1 8.1813 -2.4996 3.6506 27 7 2.2732 -1.0607 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9901 2.1597 0.0004 32 1 5.6358 1.1296 0.0011 33 1 6.9802 2.4160 -1.2482 34 1 6.0794 3.6663 -2.1389 35 1 7.5583 4.0997 -1.2487 36 1 5.2460 5.5733 -2.0483 37 1 3.8979 4.6517 -1.3435 38 1 3.2181 6.6780 -0.0485 39 1 3.1968 6.9786 -1.8045 40 1 5.5920 7.3737 1.4995 41 1 6.9999 8.0896 0.6751 42 1 7.2756 5.6416 0.8592 43 1 7.0904 6.1138 -0.8455 44 1 4.5477 -2.4434 -0.5154 45 1 5.6062 -1.0123 -0.5208 46 1 7.7390 -3.6902 0.8357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533089519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:35 Heat of formation + Delta-G solvation = 55.638840 kcal Electronic energy + Delta-G solvation = -27774.929557 eV Core-core repulsion = 24020.903986 eV Total energy + Delta-G solvation = -3754.025571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08534 -39.96967 -37.84375 -34.85378 -33.84201 -32.79670 -32.06196 -31.74803 -29.22512 -28.55355 -27.94121 -26.07791 -24.90431 -23.85920 -22.93537 -21.83031 -20.56383 -19.77614 -19.09836 -17.15076 -17.00356 -16.80719 -16.55334 -15.97485 -15.57552 -15.19104 -14.83349 -14.56351 -14.44370 -14.15526 -14.02535 -13.81546 -13.58226 -13.05223 -12.91614 -12.83005 -12.73314 -12.62409 -12.53186 -12.29121 -12.02606 -11.95401 -11.80314 -11.61457 -11.46535 -11.12798 -10.98200 -10.93736 -10.39006 -10.36861 -10.02459 -9.83263 -9.78433 -9.39107 -8.77257 -8.65742 -7.95675 -7.88585 -7.48186 -6.38157 -4.46679 1.59681 2.17624 2.33363 2.63724 3.05037 3.11472 3.20874 3.26598 3.43780 3.55936 3.77221 4.20375 4.43845 4.46479 4.67065 4.71495 4.85576 4.91553 4.95370 5.01552 5.04009 5.17479 5.26721 5.33080 5.35382 5.45016 5.55899 5.60417 5.68199 5.77502 5.82735 6.00065 6.12850 6.15683 6.21911 6.38966 6.54655 6.65841 6.74296 6.78806 6.99796 7.47234 7.53839 7.58184 7.74953 7.86773 8.24392 8.58063 8.67030 9.21328 10.68928 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.003262 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.325066 B = 8582.175647 C =10259.237872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.294 4.294 4 C 0.302 3.698 5 N -0.637 5.637 6 C 0.524 3.476 7 O -0.497 6.497 8 C 0.076 3.924 9 H 0.117 0.883 10 C -0.187 4.187 11 N -0.528 5.528 12 C 0.043 3.957 13 C -0.064 4.064 14 S -0.287 6.287 15 C -0.072 4.072 16 C 0.055 3.945 17 N -0.344 5.344 18 C 0.257 3.743 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.280 1.280 27 N -0.285 5.285 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.416 0.584 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 17.891 -3.703 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.326 4.326 4 C 0.079 3.921 5 N -0.285 5.285 6 C 0.310 3.690 7 O -0.370 6.370 8 C -0.036 4.036 9 H 0.135 0.865 10 C -0.247 4.247 11 N -0.253 5.253 12 C -0.086 4.086 13 C -0.212 4.212 14 S -0.061 6.061 15 C -0.220 4.220 16 C -0.074 4.074 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.579 4.579 20 H 0.084 0.916 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.206 1.206 27 N -0.111 5.111 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.252 0.748 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.610 17.903 -3.868 18.326 hybrid contribution 1.523 -1.026 0.948 2.067 sum 0.913 16.877 -2.920 17.152 Atomic orbital electron populations 1.20020 0.87603 1.02464 1.02023 1.22031 0.96511 0.91057 1.01821 1.21258 0.89029 1.00411 1.21928 1.17917 0.87953 0.83329 1.02882 1.42769 1.08322 1.05505 1.71881 1.20294 0.91155 0.81219 0.76327 1.90579 1.26561 1.73171 1.46731 1.21544 0.93372 0.87928 1.00774 0.86495 1.22480 1.00592 1.03783 0.97798 1.60982 1.20707 1.01211 1.42386 1.22539 0.97158 0.98602 0.90309 1.23457 0.98067 0.93552 1.06136 1.86865 1.35555 1.30220 1.53448 1.23458 1.00960 0.97972 0.99659 1.22241 0.91824 0.91858 1.01447 1.49350 1.06529 1.02179 1.54899 1.19617 0.77804 0.89765 0.98933 1.21384 1.13201 1.31902 0.91373 0.91631 1.24935 0.95721 0.94847 0.98178 1.69920 1.19223 1.32657 1.30941 0.86309 0.78353 0.78500 0.83616 1.19524 1.20505 1.20627 1.77361 0.86137 1.21824 1.25747 0.91391 0.91508 0.91132 0.82149 0.74770 0.90666 0.91474 0.90876 0.93820 0.86776 0.88698 0.87667 0.88916 0.87521 0.89434 0.92921 0.92556 0.93910 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.00 7.21 -82.44 -0.59 0.41 16 3 C -0.29 -5.84 9.58 -39.78 -0.38 -6.22 16 4 C 0.30 6.13 7.66 -153.15 -1.17 4.95 16 5 N -0.64 -10.44 5.31 -11.46 -0.06 -10.50 16 6 C 0.52 7.59 6.68 -10.99 -0.07 7.52 16 7 O -0.50 -8.28 11.03 5.55 0.06 -8.22 16 8 C 0.08 0.80 2.74 -68.87 -0.19 0.61 16 9 H 0.12 1.10 7.96 -51.93 -0.41 0.68 16 10 C -0.19 -1.66 8.51 37.16 0.32 -1.34 16 11 N -0.53 -5.52 4.20 -228.43 -0.96 -6.47 16 12 C 0.04 0.46 4.00 -3.93 -0.02 0.44 16 13 C -0.06 -0.65 6.69 37.29 0.25 -0.41 16 14 S -0.29 -2.95 22.39 -107.50 -2.41 -5.36 16 15 C -0.07 -0.60 6.69 37.29 0.25 -0.35 16 16 C 0.06 0.46 4.64 -3.93 -0.02 0.44 16 17 N -0.34 -7.88 3.60 -61.57 -0.22 -8.10 16 18 C 0.26 6.26 6.00 -5.19 -0.03 6.23 16 19 C -0.54 -14.23 9.39 -34.44 -0.32 -14.56 16 20 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -23.83 13.29 55.43 0.74 -23.09 16 23 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 N -0.29 -6.55 12.56 33.65 0.42 -6.13 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.16 3.07 5.83 -52.49 -0.31 2.77 16 32 H 0.42 6.30 7.39 -40.82 -0.30 6.00 16 33 H 0.07 0.67 7.56 -51.93 -0.39 0.27 16 34 H 0.07 0.63 6.84 -51.93 -0.36 0.27 16 35 H 0.07 0.53 6.94 -51.93 -0.36 0.17 16 36 H 0.04 0.45 7.11 -51.93 -0.37 0.08 16 37 H 0.11 1.46 5.11 -51.93 -0.27 1.19 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.60 7.84 -51.93 -0.41 0.19 16 43 H 0.05 0.42 7.15 -51.93 -0.37 0.05 16 44 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.04 1.00 7.51 -51.93 -0.39 0.61 16 46 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -30.54 377.40 -10.33 -40.87 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.86 Total: 7.20 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.71 Total: -1.17 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.08 Total: -54.30 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.06 Total: -8.22 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.41 Total: -5.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.54 -10.33 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533089519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.504 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds