Wall clock time and date at job start Tue Mar 31 2020 20:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39758 * 125.83398 * 2 1 4 4 C 1.36108 * 107.82615 * 179.97438 * 3 2 1 5 5 N 1.39480 * 126.21779 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99819 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99801 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.46758 * 299.99577 * 8 6 5 10 10 C 1.52999 * 109.47333 * 59.99933 * 8 6 5 11 11 N 1.46902 * 109.46823 * 179.97438 * 8 6 5 12 12 C 1.46474 * 110.99897 * 300.97613 * 11 8 6 13 13 C 1.53250 * 109.85683 * 162.23768 * 12 11 8 14 14 S 1.81894 * 108.50775 * 62.00455 * 13 12 11 15 15 C 1.81899 * 101.91500 * 308.69245 * 14 13 12 16 16 C 1.46473 * 110.99959 * 175.00238 * 11 8 6 17 17 N 1.35265 * 107.56962 * 359.97438 * 4 3 2 18 18 C 1.46495 * 126.05131 * 179.73218 * 17 4 3 19 19 C 1.50704 * 109.46917 * 90.00227 * 18 17 4 20 20 H 1.07996 * 119.99789 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99975 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99911 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46993 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47356 * 119.99801 * 23 21 19 26 26 H 1.48499 * 109.46972 * 240.00022 * 23 21 19 27 27 N 1.30845 * 125.84205 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47130 * 90.00205 * 1 2 3 29 29 H 1.09002 * 109.47175 * 209.99555 * 1 2 3 30 30 H 1.09001 * 109.47036 * 329.99975 * 1 2 3 31 31 H 1.07998 * 126.09135 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99909 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.46847 * 300.00138 * 10 8 6 34 34 H 1.08995 * 109.46911 * 59.99389 * 10 8 6 35 35 H 1.08995 * 109.47086 * 179.97438 * 10 8 6 36 36 H 1.09002 * 109.40633 * 282.35649 * 12 11 8 37 37 H 1.09001 * 109.40579 * 42.12128 * 12 11 8 38 38 H 1.09002 * 109.62877 * 302.30045 * 13 12 11 39 39 H 1.09000 * 109.79432 * 181.81030 * 13 12 11 40 40 H 1.08992 * 109.63271 * 291.60479 * 15 14 13 41 41 H 1.09002 * 109.79781 * 171.10050 * 15 14 13 42 42 H 1.09005 * 109.40138 * 317.87944 * 16 11 8 43 43 H 1.08994 * 109.41148 * 77.64043 * 16 11 8 44 44 H 1.09000 * 109.47596 * 210.00544 * 18 17 4 45 45 H 1.09004 * 109.47027 * 330.01061 * 18 17 4 46 46 H 0.97005 * 120.00533 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 0.0006 5 7 4.7512 1.5277 0.0003 6 6 4.6156 2.8686 -0.0002 7 8 3.5095 3.3663 -0.0007 8 6 5.8383 3.7495 0.0001 9 1 6.4330 3.5453 0.8904 10 6 6.6742 3.4622 -1.2487 11 7 5.4258 5.1595 -0.0011 12 6 4.6037 5.4649 -1.1743 13 6 3.8325 6.7690 -0.9442 14 16 5.0323 8.1189 -0.7277 15 6 6.1309 7.4427 0.5547 16 6 6.5858 6.0458 0.1182 17 7 3.6093 -0.6403 0.0015 18 6 4.7870 -1.5115 -0.0032 19 6 5.1971 -1.8093 1.4161 20 1 4.6363 -1.3918 2.2391 21 6 6.2884 -2.6149 1.6637 22 7 6.9710 -3.1237 0.6615 23 14 6.7963 -2.9846 3.4230 24 1 5.8715 -2.2975 4.3600 25 1 6.7402 -4.4500 3.6569 26 1 8.1813 -2.4996 3.6506 27 7 2.2732 -1.0607 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9901 2.1597 0.0004 32 1 5.6358 1.1296 0.0011 33 1 6.9802 2.4160 -1.2482 34 1 6.0794 3.6663 -2.1389 35 1 7.5583 4.0997 -1.2487 36 1 5.2460 5.5733 -2.0483 37 1 3.8979 4.6517 -1.3435 38 1 3.2181 6.6780 -0.0485 39 1 3.1968 6.9786 -1.8045 40 1 5.5920 7.3737 1.4995 41 1 6.9999 8.0896 0.6751 42 1 7.2756 5.6416 0.8592 43 1 7.0904 6.1138 -0.8455 44 1 4.5477 -2.4434 -0.5154 45 1 5.6062 -1.0123 -0.5208 46 1 7.7390 -3.6902 0.8357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533089519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:34 Heat of formation + Delta-G solvation = 36.810716 kcal Electronic energy + Delta-G solvation = -27775.746006 eV Core-core repulsion = 24020.903986 eV Total energy + Delta-G solvation = -3754.842020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.50152 -41.20025 -38.84019 -36.29360 -35.62229 -33.94907 -33.49641 -32.50868 -30.78074 -29.89847 -28.90300 -27.81159 -25.89109 -24.73591 -24.61883 -22.97573 -21.62750 -21.21852 -20.39677 -18.89820 -18.42890 -17.94372 -17.62299 -17.05160 -16.85241 -16.40153 -16.29869 -15.85099 -15.63816 -15.25944 -15.18412 -14.65556 -14.56291 -14.44306 -14.37150 -14.05167 -13.73564 -13.68013 -13.48676 -13.41722 -13.34728 -13.13754 -13.05726 -12.86372 -12.71713 -12.67864 -12.32720 -12.24906 -11.97129 -11.73522 -11.58221 -11.39112 -10.86465 -10.76838 -10.48369 -9.62991 -9.45146 -9.05151 -8.69195 -8.37132 -6.54471 0.79026 0.85008 1.29933 1.34751 1.38818 1.50270 1.57444 1.63749 2.06226 2.13581 2.33995 2.70370 2.93393 3.36718 3.73235 3.83783 3.90132 3.96166 4.08256 4.18837 4.22976 4.27286 4.36156 4.45851 4.55845 4.63112 4.68717 4.71327 4.75026 4.78065 4.84261 4.87872 4.89193 4.94763 4.97309 5.00459 5.10524 5.21546 5.24202 5.50837 5.75911 5.76500 5.96468 5.98453 6.16462 6.30506 6.57372 6.96770 7.04118 7.17976 8.69379 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.003262 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.325066 B = 8582.175647 C =10259.237872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.057 3.943 3 C -0.306 4.306 4 C 0.302 3.698 5 N -0.637 5.637 6 C 0.523 3.477 7 O -0.518 6.518 8 C 0.085 3.915 9 H 0.136 0.864 10 C -0.182 4.182 11 N -0.540 5.540 12 C 0.049 3.951 13 C -0.058 4.058 14 S -0.310 6.310 15 C -0.064 4.064 16 C 0.056 3.944 17 N -0.367 5.367 18 C 0.273 3.727 19 C -0.555 4.555 20 H 0.046 0.954 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.277 1.277 26 H -0.263 1.263 27 N -0.333 5.333 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.168 0.832 32 H 0.420 0.580 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.049 0.951 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 19.299 -2.957 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.338 4.338 4 C 0.079 3.921 5 N -0.285 5.285 6 C 0.311 3.689 7 O -0.392 6.392 8 C -0.026 4.026 9 H 0.154 0.846 10 C -0.241 4.241 11 N -0.265 5.265 12 C -0.080 4.080 13 C -0.207 4.207 14 S -0.085 6.085 15 C -0.213 4.213 16 C -0.073 4.073 17 N -0.153 5.153 18 C 0.154 3.846 19 C -0.593 4.593 20 H 0.064 0.936 21 C -0.173 4.173 22 N -0.551 5.551 23 Si 0.792 3.208 24 H -0.202 1.202 25 H -0.203 1.203 26 H -0.188 1.188 27 N -0.159 5.159 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.186 0.814 32 H 0.258 0.742 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.624 19.340 -3.133 19.602 hybrid contribution 1.084 -1.372 0.691 1.881 sum 1.708 17.968 -2.442 18.213 Atomic orbital electron populations 1.20216 0.84074 1.03805 1.03824 1.22872 0.98675 0.90167 0.99046 1.21459 0.89021 1.00726 1.22587 1.18310 0.89565 0.82757 1.01428 1.42978 1.07481 1.05919 1.72134 1.21170 0.92337 0.80580 0.74856 1.90564 1.27991 1.73290 1.47378 1.21562 0.91379 0.87207 1.02471 0.84616 1.22456 1.00902 1.04302 0.96414 1.60976 1.21925 1.01351 1.42269 1.22393 0.96925 0.97808 0.90847 1.23376 0.98009 0.93495 1.05778 1.86946 1.36265 1.30743 1.54519 1.23542 1.01016 0.98387 0.98327 1.22334 0.91181 0.91218 1.02521 1.49156 1.06247 1.02939 1.56920 1.19212 0.78631 0.88981 0.97763 1.21426 1.13593 1.32681 0.91629 0.93562 1.25652 0.95422 0.94275 1.01916 1.69987 1.19553 1.32822 1.32701 0.85359 0.78488 0.78144 0.78791 1.20200 1.20255 1.18779 1.77308 0.86513 1.23675 1.28357 0.89239 0.91011 0.88891 0.81436 0.74208 0.90722 0.92211 0.88528 0.93177 0.89040 0.90140 0.86980 0.89452 0.85334 0.87290 0.92174 0.95649 0.93295 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.24 0.74 -0.95 16 2 C 0.06 2.28 7.21 43.07 0.31 2.59 16 3 C -0.31 -12.20 9.58 22.14 0.21 -11.99 16 4 C 0.30 12.48 7.66 131.31 1.01 13.48 16 5 N -0.64 -20.88 5.31 -308.56 -1.64 -22.52 16 6 C 0.52 14.83 6.68 87.66 0.59 15.41 16 7 O -0.52 -17.18 11.03 -3.07 -0.03 -17.21 16 8 C 0.09 1.64 2.74 44.17 0.12 1.76 16 9 H 0.14 2.16 7.96 -2.39 -0.02 2.14 16 10 C -0.18 -2.82 8.51 71.98 0.61 -2.21 16 11 N -0.54 -10.26 4.20 -876.63 -3.68 -13.94 16 12 C 0.05 1.01 4.00 86.47 0.35 1.36 16 13 C -0.06 -1.16 6.69 72.07 0.48 -0.68 16 14 S -0.31 -5.97 22.39 -56.49 -1.27 -7.24 16 15 C -0.06 -0.91 6.69 72.07 0.48 -0.43 16 16 C 0.06 0.75 4.64 86.47 0.40 1.15 16 17 N -0.37 -17.34 3.60 -348.71 -1.26 -18.60 16 18 C 0.27 13.80 6.00 85.64 0.51 14.31 16 19 C -0.56 -29.87 9.39 25.60 0.24 -29.63 16 20 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 21 C 0.03 1.52 5.46 84.66 0.46 1.98 16 22 N -0.91 -48.91 13.29 21.45 0.28 -48.62 16 23 Si 0.97 41.33 29.54 68.60 2.03 43.36 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 27 N -0.33 -15.72 12.56 -47.45 -0.60 -16.31 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.17 6.40 5.83 -2.91 -0.02 6.39 16 32 H 0.42 12.73 7.39 -92.71 -0.68 12.05 16 33 H 0.07 1.19 7.56 -2.39 -0.02 1.17 16 34 H 0.06 1.03 6.84 -2.39 -0.02 1.01 16 35 H 0.10 1.08 6.94 -2.39 -0.02 1.06 16 36 H 0.05 0.95 7.11 -2.39 -0.02 0.94 16 37 H 0.09 2.33 5.11 -2.39 -0.01 2.32 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.11 1.05 7.84 -2.38 -0.02 1.03 16 43 H 0.06 0.76 7.15 -2.39 -0.02 0.74 16 44 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 2.36 7.51 -2.38 -0.02 2.34 16 46 H 0.27 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -66.98 377.40 0.68 -66.30 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.32 Total: 28.63 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 6.52 Total: 6.15 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -6.88 Total: -119.99 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.03 Total: -17.21 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -1.27 Total: -7.24 kcal Total: -66.98 0.68 -66.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533089519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.109 kcal (2) G-P(sol) polarization free energy of solvation -66.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds