Wall clock time and date at job start Tue Mar 31 2020 20:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35240 * 126.07237 * 2 1 4 4 C 1.40400 * 107.87122 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.97318 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00105 * 359.97438 * 5 4 3 7 7 O 1.21591 * 120.00220 * 354.87940 * 6 5 4 8 8 N 1.34778 * 119.99859 * 174.87772 * 6 5 4 9 9 C 1.46379 * 119.64323 * 185.02271 * 8 6 5 10 10 C 1.53754 * 109.20741 * 114.91418 * 9 8 6 11 11 H 1.09001 * 109.62453 * 177.61830 * 10 9 8 12 12 C 1.52998 * 109.69915 * 297.99132 * 10 9 8 13 13 S 1.81739 * 108.75237 * 57.83007 * 10 9 8 14 14 C 1.81737 * 102.30758 * 305.34494 * 13 10 9 15 15 H 1.09000 * 109.69724 * 294.67928 * 14 13 10 16 16 C 1.53004 * 109.58466 * 174.33472 * 14 13 10 17 17 C 1.46375 * 119.65160 * 5.29637 * 8 6 5 18 18 N 1.31208 * 108.05287 * 359.97438 * 4 3 2 19 19 N 1.34972 * 126.07216 * 179.97438 * 2 1 3 20 20 C 1.46493 * 125.97426 * 0.06119 * 19 2 1 21 21 C 1.50707 * 109.46931 * 269.99578 * 20 19 2 22 22 H 1.07993 * 119.99993 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99869 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99960 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47123 * 120.00008 * 25 23 21 28 28 H 1.48498 * 109.47465 * 240.00623 * 25 23 21 29 29 H 1.09000 * 109.47580 * 90.02890 * 1 2 3 30 30 H 1.09006 * 109.46858 * 210.02877 * 1 2 3 31 31 H 1.09001 * 109.47287 * 330.02645 * 1 2 3 32 32 H 1.08008 * 126.06374 * 359.95799 * 3 2 1 33 33 H 0.97000 * 119.99867 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47057 * 234.91984 * 9 8 6 35 35 H 1.09002 * 109.47072 * 354.90730 * 9 8 6 36 36 H 1.08995 * 109.47237 * 179.32478 * 12 10 9 37 37 H 1.09001 * 109.46958 * 299.33089 * 12 10 9 38 38 H 1.09007 * 109.46667 * 59.32649 * 12 10 9 39 39 H 1.08994 * 109.46867 * 300.68858 * 16 14 13 40 40 H 1.08996 * 109.47032 * 60.68869 * 16 14 13 41 41 H 1.09002 * 109.47097 * 180.68752 * 16 14 13 42 42 H 1.08999 * 109.46561 * 5.08903 * 17 8 6 43 43 H 1.08995 * 109.46856 * 125.07853 * 17 8 6 44 44 H 1.09005 * 109.47729 * 29.99117 * 20 19 2 45 45 H 1.08998 * 109.47747 * 149.99545 * 20 19 2 46 46 H 0.96998 * 119.99556 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4751 0.0013 6 6 4.6369 2.8159 0.0009 7 8 3.5319 3.3143 -0.0940 8 7 5.7250 3.6043 0.1058 9 6 5.5604 5.0546 0.2157 10 6 6.0605 5.5175 1.5940 11 1 5.9802 6.6021 1.6673 12 6 5.2196 4.8656 2.6934 13 16 7.7988 5.0213 1.7816 14 6 7.7281 3.2338 1.4614 15 1 7.1479 2.7432 2.2429 16 6 9.1464 2.6603 1.4392 17 6 7.0590 3.0017 0.1025 18 7 3.6336 -0.6575 0.0015 19 7 2.3017 -1.0909 0.0005 20 6 1.8501 -2.4845 -0.0002 21 6 1.6942 -2.9627 1.4205 22 1 1.9094 -2.2951 2.2416 23 6 1.2756 -4.2522 1.6719 24 7 1.0129 -5.0650 0.6719 25 14 1.0830 -4.8450 3.4327 26 1 1.4387 -3.7466 4.3666 27 1 -0.3251 -5.2555 3.6656 28 1 1.9816 -6.0041 3.6660 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 1.9719 2.1211 -0.0006 33 1 5.6586 1.0779 0.0021 34 1 6.1381 5.5463 -0.5671 35 1 4.5066 5.3102 0.1042 36 1 5.5848 5.1867 3.6688 37 1 4.1776 5.1643 2.5791 38 1 5.2973 3.7811 2.6153 39 1 9.7263 3.1555 0.6604 40 1 9.6207 2.8264 2.4064 41 1 9.1026 1.5905 1.2349 42 1 6.9733 1.9308 -0.0820 43 1 7.6620 3.4584 -0.6821 44 1 0.8918 -2.5559 -0.5147 45 1 2.5851 -3.1045 -0.5135 46 1 0.7181 -5.9720 0.8488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540815490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:17 Heat of formation + Delta-G solvation = 57.634405 kcal Electronic energy + Delta-G solvation = -27503.072775 eV Core-core repulsion = 23749.133737 eV Total energy + Delta-G solvation = -3753.939037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03874 -40.05174 -37.14976 -35.25847 -34.17200 -33.40639 -32.51467 -31.33787 -30.75952 -27.57209 -26.93612 -26.38846 -26.11287 -23.24680 -22.50662 -22.26361 -20.74083 -19.87974 -19.39907 -17.98508 -16.89188 -16.70177 -16.44695 -15.96871 -15.61822 -15.38386 -14.91159 -14.73187 -14.46574 -14.33068 -14.11214 -13.90521 -13.31363 -13.17904 -12.98718 -12.72306 -12.49812 -12.46315 -12.35097 -12.16254 -12.03287 -11.89489 -11.65658 -11.64413 -11.42473 -11.11670 -10.95894 -10.87282 -10.46802 -10.27983 -10.09067 -10.04379 -9.69512 -9.54454 -9.13686 -8.66674 -8.00688 -7.93762 -7.43993 -6.27339 -4.35006 1.33870 2.12017 2.21028 2.57275 3.00555 3.18657 3.24778 3.26877 3.33930 3.75569 3.96134 4.16321 4.28971 4.39968 4.53186 4.57963 4.60839 4.86478 4.94242 5.06250 5.16907 5.18978 5.29299 5.37709 5.44006 5.47318 5.53167 5.56590 5.68656 5.71003 5.91407 5.93663 6.03383 6.09281 6.22612 6.46737 6.51065 6.59399 6.89024 6.97093 7.05616 7.46607 7.65635 7.78453 7.87385 8.04752 8.45023 8.64245 8.74076 9.31518 10.79859 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.002711 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.775212 B =10326.842261 C =11001.974036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.288 4.288 4 C 0.280 3.720 5 N -0.644 5.644 6 C 0.716 3.284 7 O -0.558 6.558 8 N -0.629 5.629 9 C 0.133 3.867 10 C -0.071 4.071 11 H 0.120 0.880 12 C -0.142 4.142 13 S -0.252 6.252 14 C -0.073 4.073 15 H 0.094 0.906 16 C -0.133 4.133 17 C 0.112 3.888 18 N -0.323 5.323 19 N -0.317 5.317 20 C 0.258 3.742 21 C -0.536 4.536 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.281 1.281 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.404 0.596 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.911 19.453 -0.745 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.026 3.974 5 N -0.296 5.296 6 C 0.417 3.583 7 O -0.433 6.433 8 N -0.367 5.367 9 C 0.008 3.992 10 C -0.201 4.201 11 H 0.138 0.862 12 C -0.201 4.201 13 S -0.024 6.024 14 C -0.203 4.203 15 H 0.113 0.887 16 C -0.192 4.192 17 C -0.013 4.013 18 N -0.154 5.154 19 N -0.100 5.100 20 C 0.141 3.859 21 C -0.574 4.574 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.177 0.823 33 H 0.242 0.758 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.624 19.105 -0.601 22.907 hybrid contribution -0.943 -0.787 0.749 1.438 sum 11.681 18.318 0.149 21.727 Atomic orbital electron populations 1.20375 0.87936 1.03844 1.02531 1.21051 0.94899 0.87110 1.00855 1.21205 0.89664 0.99789 1.21300 1.18667 0.86515 0.89306 1.02892 1.41635 1.07652 1.03743 1.76546 1.15542 0.84298 0.80567 0.77861 1.90867 1.23369 1.73222 1.55850 1.47033 1.04621 1.06744 1.78299 1.21691 1.04365 0.78432 0.94682 1.23774 0.93606 1.03858 0.98840 0.86219 1.21963 0.99826 1.01085 0.97243 1.86860 1.13023 1.08754 1.93761 1.23608 1.01340 0.94768 1.00607 0.88723 1.21583 0.92825 1.01227 1.03538 1.21861 0.83696 0.99255 0.96512 1.77235 1.00059 1.08248 1.29812 1.48971 1.00833 1.07754 1.52402 1.19688 0.95971 0.71344 0.98923 1.21368 1.46679 0.97949 0.91415 0.91706 1.24933 0.94694 0.96082 0.98104 1.69930 1.44956 1.07098 1.30945 0.86310 0.77895 0.78804 0.83734 1.19593 1.20622 1.20649 0.91078 0.89919 0.90644 0.82329 0.75809 0.89976 0.87187 0.91577 0.91234 0.92445 0.91298 0.91231 0.90581 0.89317 0.89241 0.92783 0.93025 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.89 36.00 0.36 -1.15 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -5.92 9.52 -39.84 -0.38 -6.30 16 4 C 0.28 5.66 8.11 -154.37 -1.25 4.41 16 5 N -0.64 -10.03 5.35 -15.51 -0.08 -10.12 16 6 C 0.72 10.47 8.10 -86.92 -0.70 9.76 16 7 O -0.56 -9.80 12.80 5.29 0.07 -9.73 16 8 N -0.63 -6.61 2.12 -179.00 -0.38 -6.99 16 9 C 0.13 1.20 5.70 -3.72 -0.02 1.18 16 10 C -0.07 -0.59 3.47 -26.34 -0.09 -0.68 16 11 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 12 C -0.14 -1.37 8.99 37.16 0.33 -1.04 16 13 S -0.25 -2.20 21.09 -107.50 -2.27 -4.47 16 14 C -0.07 -0.58 2.92 -26.61 -0.08 -0.66 16 15 H 0.09 0.89 7.35 -51.93 -0.38 0.51 16 16 C -0.13 -0.83 9.22 37.16 0.34 -0.49 16 17 C 0.11 0.90 5.48 -3.99 -0.02 0.88 16 18 N -0.32 -7.39 12.59 31.44 0.40 -7.00 16 19 N -0.32 -7.48 3.59 -58.33 -0.21 -7.69 16 20 C 0.26 6.59 5.81 -5.19 -0.03 6.56 16 21 C -0.54 -14.65 9.39 -34.43 -0.32 -14.97 16 22 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 23 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 25 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.16 3.19 5.93 -52.48 -0.31 2.88 16 33 H 0.40 5.18 6.20 -40.82 -0.25 4.92 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.11 1.12 6.87 -51.93 -0.36 0.77 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.67 6.44 -51.92 -0.33 0.33 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.66 5.48 -51.93 -0.28 0.38 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 1.36 7.65 -51.93 -0.40 0.97 16 45 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -31.90 379.98 -10.48 -42.38 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.91 Total: 5.56 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.53 Total: 0.52 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.46 Total: -55.95 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.27 Total: -4.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.90 -10.48 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540815490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.017 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds