Wall clock time and date at job start Tue Mar 31 2020 20:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35240 * 126.07237 * 2 1 4 4 C 1.40400 * 107.87122 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.97318 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00105 * 359.97438 * 5 4 3 7 7 O 1.21591 * 120.00220 * 354.87940 * 6 5 4 8 8 N 1.34778 * 119.99859 * 174.87772 * 6 5 4 9 9 C 1.46379 * 119.64323 * 185.02271 * 8 6 5 10 10 C 1.53754 * 109.20741 * 114.91418 * 9 8 6 11 11 H 1.09001 * 109.62453 * 177.61830 * 10 9 8 12 12 C 1.52998 * 109.69915 * 297.99132 * 10 9 8 13 13 S 1.81739 * 108.75237 * 57.83007 * 10 9 8 14 14 C 1.81737 * 102.30758 * 305.34494 * 13 10 9 15 15 H 1.09000 * 109.69724 * 294.67928 * 14 13 10 16 16 C 1.53004 * 109.58466 * 174.33472 * 14 13 10 17 17 C 1.46375 * 119.65160 * 5.29637 * 8 6 5 18 18 N 1.31208 * 108.05287 * 359.97438 * 4 3 2 19 19 N 1.34972 * 126.07216 * 179.97438 * 2 1 3 20 20 C 1.46493 * 125.97426 * 0.06119 * 19 2 1 21 21 C 1.50707 * 109.46931 * 269.99578 * 20 19 2 22 22 H 1.07993 * 119.99993 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99869 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99960 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47123 * 120.00008 * 25 23 21 28 28 H 1.48498 * 109.47465 * 240.00623 * 25 23 21 29 29 H 1.09000 * 109.47580 * 90.02890 * 1 2 3 30 30 H 1.09006 * 109.46858 * 210.02877 * 1 2 3 31 31 H 1.09001 * 109.47287 * 330.02645 * 1 2 3 32 32 H 1.08008 * 126.06374 * 359.95799 * 3 2 1 33 33 H 0.97000 * 119.99867 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47057 * 234.91984 * 9 8 6 35 35 H 1.09002 * 109.47072 * 354.90730 * 9 8 6 36 36 H 1.08995 * 109.47237 * 179.32478 * 12 10 9 37 37 H 1.09001 * 109.46958 * 299.33089 * 12 10 9 38 38 H 1.09007 * 109.46667 * 59.32649 * 12 10 9 39 39 H 1.08994 * 109.46867 * 300.68858 * 16 14 13 40 40 H 1.08996 * 109.47032 * 60.68869 * 16 14 13 41 41 H 1.09002 * 109.47097 * 180.68752 * 16 14 13 42 42 H 1.08999 * 109.46561 * 5.08903 * 17 8 6 43 43 H 1.08995 * 109.46856 * 125.07853 * 17 8 6 44 44 H 1.09005 * 109.47729 * 29.99117 * 20 19 2 45 45 H 1.08998 * 109.47747 * 149.99545 * 20 19 2 46 46 H 0.96998 * 119.99556 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4751 0.0013 6 6 4.6369 2.8159 0.0009 7 8 3.5319 3.3143 -0.0940 8 7 5.7250 3.6043 0.1058 9 6 5.5604 5.0546 0.2157 10 6 6.0605 5.5175 1.5940 11 1 5.9802 6.6021 1.6673 12 6 5.2196 4.8656 2.6934 13 16 7.7988 5.0213 1.7816 14 6 7.7281 3.2338 1.4614 15 1 7.1479 2.7432 2.2429 16 6 9.1464 2.6603 1.4392 17 6 7.0590 3.0017 0.1025 18 7 3.6336 -0.6575 0.0015 19 7 2.3017 -1.0909 0.0005 20 6 1.8501 -2.4845 -0.0002 21 6 1.6942 -2.9627 1.4205 22 1 1.9094 -2.2951 2.2416 23 6 1.2756 -4.2522 1.6719 24 7 1.0129 -5.0650 0.6719 25 14 1.0830 -4.8450 3.4327 26 1 1.4387 -3.7466 4.3666 27 1 -0.3251 -5.2555 3.6656 28 1 1.9816 -6.0041 3.6660 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 1.9719 2.1211 -0.0006 33 1 5.6586 1.0779 0.0021 34 1 6.1381 5.5463 -0.5671 35 1 4.5066 5.3102 0.1042 36 1 5.5848 5.1867 3.6688 37 1 4.1776 5.1643 2.5791 38 1 5.2973 3.7811 2.6153 39 1 9.7263 3.1555 0.6604 40 1 9.6207 2.8264 2.4064 41 1 9.1026 1.5905 1.2349 42 1 6.9733 1.9308 -0.0820 43 1 7.6620 3.4584 -0.6821 44 1 0.8918 -2.5559 -0.5147 45 1 2.5851 -3.1045 -0.5135 46 1 0.7181 -5.9720 0.8488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540815490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:16 Heat of formation + Delta-G solvation = 40.526437 kcal Electronic energy + Delta-G solvation = -27503.814632 eV Core-core repulsion = 23749.133737 eV Total energy + Delta-G solvation = -3754.680894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43426 -41.38679 -38.13769 -36.54496 -35.48039 -34.84497 -33.55611 -32.78608 -32.48676 -28.78939 -28.13712 -27.86060 -27.23592 -25.02110 -23.45066 -23.15627 -21.87670 -21.33278 -20.63663 -19.23459 -18.78365 -17.93991 -17.51054 -17.23065 -16.90234 -16.45939 -16.18829 -15.94933 -15.82075 -15.53162 -15.26469 -14.89735 -14.65275 -14.33295 -14.04620 -13.91646 -13.79721 -13.64735 -13.57164 -13.32523 -13.17270 -13.06202 -12.82180 -12.72326 -12.69702 -12.63620 -12.30311 -12.27145 -12.10803 -11.68639 -11.57121 -11.37139 -11.10431 -10.78585 -10.74087 -10.04797 -9.58123 -9.11072 -8.69218 -8.33111 -6.50797 0.65425 1.00166 1.03657 1.36452 1.38286 1.44047 1.50695 1.60297 1.93408 2.30271 2.33864 2.66522 2.96410 3.48364 3.65638 3.81206 3.85596 3.89353 3.96876 4.12758 4.17861 4.31496 4.40561 4.49340 4.58058 4.70381 4.72823 4.76329 4.77453 4.79254 4.80221 4.86989 4.92516 4.95326 5.00010 5.11110 5.13050 5.17853 5.23565 5.43874 5.53610 5.61337 5.80872 5.93621 6.26285 6.50374 6.62699 7.04553 7.20301 7.27321 8.72842 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.002711 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.775212 B =10326.842261 C =11001.974036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.089 3.911 3 C -0.297 4.297 4 C 0.290 3.710 5 N -0.637 5.637 6 C 0.715 3.285 7 O -0.589 6.589 8 N -0.617 5.617 9 C 0.131 3.869 10 C -0.065 4.065 11 H 0.141 0.859 12 C -0.138 4.138 13 S -0.258 6.258 14 C -0.069 4.069 15 H 0.077 0.923 16 C -0.129 4.129 17 C 0.108 3.892 18 N -0.358 5.358 19 N -0.342 5.342 20 C 0.276 3.724 21 C -0.552 4.552 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.971 3.029 26 H -0.275 1.275 27 H -0.267 1.267 28 H -0.274 1.274 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.166 0.834 33 H 0.417 0.583 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.052 0.948 45 H 0.025 0.975 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 20.788 -0.307 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.328 4.328 4 C 0.035 3.965 5 N -0.291 5.291 6 C 0.416 3.584 7 O -0.466 6.466 8 N -0.354 5.354 9 C 0.007 3.993 10 C -0.194 4.194 11 H 0.159 0.841 12 C -0.197 4.197 13 S -0.030 6.030 14 C -0.199 4.199 15 H 0.096 0.904 16 C -0.188 4.188 17 C -0.016 4.016 18 N -0.189 5.189 19 N -0.125 5.125 20 C 0.157 3.843 21 C -0.590 4.590 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.795 3.205 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.199 1.199 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.183 0.817 33 H 0.257 0.743 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.130 0.870 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.535 20.477 -0.168 24.546 hybrid contribution -1.127 -1.074 0.595 1.666 sum 12.408 19.403 0.427 23.035 Atomic orbital electron populations 1.20498 0.85393 1.04350 1.04116 1.21725 0.96640 0.86404 0.99409 1.21367 0.89882 0.99853 1.21649 1.18940 0.87983 0.88952 1.00585 1.41643 1.07044 1.03922 1.76526 1.15687 0.84906 0.80211 0.77575 1.90835 1.24962 1.73595 1.57232 1.47083 1.04477 1.07063 1.76756 1.21868 1.04206 0.77368 0.95884 1.23755 0.93089 1.04922 0.97658 0.84129 1.21908 0.99909 0.99609 0.98281 1.86917 1.12970 1.09227 1.93870 1.23593 1.02191 0.94265 0.99836 0.90424 1.21585 0.91580 1.01838 1.03788 1.22097 0.82457 0.99726 0.97316 1.77155 1.00140 1.09635 1.31980 1.48766 1.01615 1.07481 1.54631 1.19243 0.94912 0.72409 0.97753 1.21463 1.47441 0.98340 0.91775 0.93311 1.25721 0.93974 0.95940 1.02150 1.70007 1.45113 1.07569 1.32889 0.85315 0.78490 0.78079 0.78625 1.19926 1.19203 1.19938 0.88885 0.91404 0.87998 0.81692 0.74321 0.87651 0.88388 0.90971 0.91812 0.94749 0.90288 0.91500 0.89605 0.88776 0.86984 0.93019 0.95708 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.89 71.23 0.70 -2.16 16 2 C 0.09 3.74 6.92 41.38 0.29 4.03 16 3 C -0.30 -12.20 9.52 22.10 0.21 -11.99 16 4 C 0.29 11.85 8.11 133.31 1.08 12.93 16 5 N -0.64 -19.65 5.35 -321.24 -1.72 -21.37 16 6 C 0.72 20.41 8.10 179.05 1.45 21.86 16 7 O -0.59 -20.47 12.80 -4.00 -0.05 -20.53 16 8 N -0.62 -12.07 2.12 -838.50 -1.78 -13.85 16 9 C 0.13 2.11 5.70 86.66 0.49 2.61 16 10 C -0.06 -0.95 3.47 30.85 0.11 -0.85 16 11 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 12 C -0.14 -2.56 8.99 71.98 0.65 -1.92 16 13 S -0.26 -3.98 21.09 -56.49 -1.19 -5.17 16 14 C -0.07 -0.98 2.92 30.68 0.09 -0.89 16 15 H 0.08 1.40 7.35 -2.39 -0.02 1.38 16 16 C -0.13 -1.35 9.22 71.98 0.66 -0.69 16 17 C 0.11 1.52 5.48 86.48 0.47 1.99 16 18 N -0.36 -16.80 12.59 -54.44 -0.69 -17.49 16 19 N -0.34 -16.58 3.59 -338.45 -1.22 -17.80 16 20 C 0.28 14.56 5.81 85.64 0.50 15.06 16 21 C -0.55 -30.90 9.39 25.60 0.24 -30.66 16 22 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 23 C 0.02 1.26 5.46 84.66 0.46 1.73 16 24 N -0.92 -51.60 13.29 21.45 0.28 -51.32 16 25 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.07 2.48 7.71 -2.38 -0.02 2.46 16 31 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.17 6.59 5.93 -2.91 -0.02 6.57 16 33 H 0.42 10.41 6.20 -92.71 -0.58 9.83 16 34 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.10 1.89 6.87 -2.39 -0.02 1.88 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.03 0.79 6.44 -2.38 -0.02 0.77 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 1.23 5.48 -2.39 -0.01 1.22 16 43 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.05 2.70 7.65 -2.38 -0.02 2.68 16 45 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -69.54 379.98 3.50 -66.04 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.42 Total: 25.43 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 7.41 Total: 11.06 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -5.11 Total: -121.82 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -1.19 Total: -5.17 kcal Total: -69.54 3.50 -66.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540815490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.567 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds