Wall clock time and date at job start Tue Mar 31 2020 21:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.51628 * 2 1 4 4 F 1.39905 * 109.47157 * 59.99826 * 3 2 1 5 5 F 1.39900 * 109.47010 * 300.00217 * 3 2 1 6 6 F 1.39897 * 109.47422 * 179.97438 * 3 2 1 7 7 C 1.53294 * 109.51058 * 120.10204 * 2 1 3 8 8 N 1.47151 * 108.38883 * 67.67114 * 7 2 1 9 9 C 1.34777 * 120.98405 * 230.55850 * 8 7 2 10 10 O 1.21272 * 119.99879 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99920 * 179.97438 * 9 8 7 12 12 H 1.09007 * 109.47315 * 320.00250 * 11 9 8 13 13 N 1.46903 * 109.47148 * 200.00053 * 11 9 8 14 14 C 1.53000 * 109.46935 * 79.99864 * 11 9 8 15 15 C 1.53001 * 109.47202 * 184.99727 * 14 11 9 16 16 C 1.52996 * 109.47045 * 180.02562 * 15 14 11 17 17 C 1.50708 * 109.47262 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99235 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00202 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00228 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99587 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47528 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46940 * 120.00275 * 21 19 17 24 24 H 1.48505 * 109.47075 * 239.99828 * 21 19 17 25 25 C 1.47155 * 118.03519 * 50.53190 * 8 7 2 26 26 C 1.53296 * 108.38397 * 309.47104 * 25 8 7 27 27 O 1.42956 * 109.26744 * 52.27406 * 26 25 8 28 28 H 1.09001 * 109.46855 * 60.00000 * 1 2 3 29 29 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46792 * 300.00354 * 1 2 3 31 31 H 1.09004 * 109.68242 * 187.39352 * 7 2 1 32 32 H 1.09000 * 109.68286 * 307.90774 * 7 2 1 33 33 H 1.00902 * 110.99736 * 176.04743 * 13 11 9 34 34 H 1.00902 * 111.00031 * 300.00085 * 13 11 9 35 35 H 1.08995 * 109.47556 * 305.00095 * 14 11 9 36 36 H 1.09000 * 109.46962 * 65.00096 * 14 11 9 37 37 H 1.08996 * 109.47382 * 300.00108 * 15 14 11 38 38 H 1.09000 * 109.46861 * 60.00307 * 15 14 11 39 39 H 1.09001 * 109.47460 * 299.99723 * 16 15 14 40 40 H 1.09000 * 109.47309 * 60.00252 * 16 15 14 41 41 H 0.96999 * 120.00305 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.68076 * 69.19090 * 25 8 7 43 43 H 1.09002 * 109.68349 * 189.70892 * 25 8 7 44 44 H 1.08997 * 109.51312 * 172.22351 * 26 25 8 45 45 H 1.09004 * 109.51505 * 292.32343 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 9 1.5752 2.1020 1.1423 5 9 1.5752 2.1019 -1.1423 6 9 3.4401 1.4410 0.0006 7 6 2.0420 -0.7247 1.2500 8 7 1.6969 -2.1505 1.1340 9 6 1.0718 -2.7970 2.1379 10 8 0.7857 -2.2034 3.1560 11 6 0.7284 -4.2573 1.9952 12 1 0.3784 -4.4509 0.9811 13 7 -0.3287 -4.6077 2.9532 14 6 1.9719 -5.1034 2.2757 15 6 1.6568 -6.5769 2.0100 16 6 2.9002 -7.4230 2.2911 17 6 2.5901 -8.8743 2.0287 18 1 1.6046 -9.1641 1.6952 19 6 3.5644 -9.8319 2.2144 20 7 4.7646 -9.4790 2.6200 21 14 3.1797 -11.6308 1.8899 22 1 1.7690 -11.7630 1.4451 23 1 4.0828 -12.1467 0.8299 24 1 3.3817 -12.4129 3.1360 25 6 2.0541 -2.8495 -0.1107 26 6 1.5415 -2.0212 -1.2944 27 8 2.0075 -0.6759 -1.1657 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1239 -0.6135 1.3216 32 1 1.5702 -0.3033 2.1377 33 1 -0.6220 -5.5657 2.8336 34 1 -0.0285 -4.4371 3.9013 35 1 2.7845 -4.7824 1.6241 36 1 2.2697 -4.9776 3.3167 37 1 0.8443 -6.8980 2.6616 38 1 1.3591 -6.7027 0.9690 39 1 3.7130 -7.1021 1.6397 40 1 3.1976 -7.2971 3.3322 41 1 5.4502 -10.1526 2.7503 42 1 3.1372 -2.9522 -0.1762 43 1 1.5904 -3.8358 -0.1239 44 1 1.9140 -2.4479 -2.2257 45 1 0.4516 -2.0300 -1.3002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877234860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:58 Heat of formation + Delta-G solvation = -236.751323 kcal Electronic energy + Delta-G solvation = -31065.156178 eV Core-core repulsion = 26281.549256 eV Total energy + Delta-G solvation = -4783.606923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.49344 -48.00268 -47.93775 -41.06160 -39.14489 -36.21244 -35.19817 -33.79164 -33.37455 -31.33564 -29.65017 -28.46750 -27.29797 -26.74128 -24.84666 -23.92417 -22.56718 -20.90448 -20.28855 -19.44598 -18.90094 -18.72711 -18.37368 -17.67765 -16.81170 -16.40376 -16.26648 -15.59028 -15.38405 -15.17050 -14.82887 -14.76566 -14.66954 -14.55513 -14.53359 -14.36927 -14.11175 -14.08165 -14.01012 -13.73224 -13.44161 -13.16417 -12.78473 -12.60801 -12.43164 -12.10483 -12.02977 -11.95717 -11.85892 -11.31143 -11.17329 -10.90564 -10.81244 -10.73373 -10.61124 -9.93759 -9.85883 -9.48184 -9.20155 -8.97251 -8.61128 -8.44204 -6.08830 -4.12169 1.97946 2.38421 2.46950 2.91712 3.24716 3.32823 3.35954 3.38553 3.48174 3.90786 4.05148 4.24221 4.26965 4.38419 4.45359 4.59473 4.69565 4.76787 4.93579 5.01400 5.08016 5.09830 5.15798 5.21599 5.27100 5.27597 5.43443 5.58140 5.62897 5.82194 5.95800 6.13461 6.29393 6.45751 6.62404 6.90952 6.92474 7.15854 7.47770 7.55659 7.67285 7.89705 7.97001 8.31136 8.95154 9.52894 11.02334 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.002366 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.119652 B =11830.345106 C =12246.516040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.061 3.939 3 C 0.474 3.526 4 F -0.171 7.171 5 F -0.172 7.172 6 F -0.172 7.172 7 C 0.090 3.910 8 N -0.614 5.614 9 C 0.531 3.469 10 O -0.525 6.525 11 C 0.076 3.924 12 H 0.101 0.899 13 N -0.830 5.830 14 C -0.149 4.149 15 C -0.108 4.108 16 C 0.022 3.978 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.065 3.935 26 C 0.046 3.954 27 O -0.355 6.355 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.353 0.647 34 H 0.350 0.650 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 20.907 -8.152 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.018 3.982 3 C 0.419 3.581 4 F -0.152 7.152 5 F -0.153 7.153 6 F -0.153 7.153 7 C -0.033 4.033 8 N -0.350 5.350 9 C 0.320 3.680 10 O -0.399 6.399 11 C -0.039 4.039 12 H 0.119 0.881 13 N -0.363 5.363 14 C -0.189 4.189 15 C -0.146 4.146 16 C -0.015 4.015 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.058 4.058 26 C -0.030 4.030 27 O -0.274 6.274 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.127 0.873 44 H 0.139 0.861 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.061 21.821 -8.018 24.606 hybrid contribution 0.731 -1.658 0.238 1.827 sum -7.330 20.164 -7.780 22.822 Atomic orbital electron populations 1.22417 0.91435 1.05295 1.04698 1.22801 0.96852 0.88595 0.89943 1.19840 0.75893 0.88417 0.73925 1.93222 1.88539 1.82625 1.50842 1.93204 1.88348 1.82954 1.50828 1.93218 1.29152 1.96877 1.96074 1.22102 1.01950 0.82164 0.97129 1.47989 1.60323 1.09360 1.17347 1.20834 0.75622 0.89337 0.82243 1.90670 1.52396 1.68389 1.28480 1.21471 0.93378 0.90034 0.98976 0.88150 1.58710 1.38985 1.29910 1.08652 1.22453 0.96321 0.97452 1.02665 1.21651 1.01225 0.91459 1.00221 1.19079 0.91632 0.93794 0.96993 1.21263 0.97553 0.92024 1.45273 0.92627 1.25032 0.95084 0.99138 0.95195 1.69966 1.03046 1.33693 1.46636 0.86547 0.78421 0.85162 0.77939 1.19715 1.20976 1.20976 1.22647 1.02699 0.97240 0.83190 1.23219 0.99952 0.80598 0.99263 1.88019 1.72077 1.26707 1.40579 0.90114 0.89561 0.89716 0.89392 0.86759 0.83135 0.83599 0.91448 0.91578 0.93259 0.93037 0.96607 0.96705 0.92971 0.89391 0.87291 0.86111 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 7.85 37.16 0.29 -1.17 16 2 C 0.06 0.56 0.59 -90.47 -0.05 0.51 16 3 C 0.47 4.63 2.38 37.16 0.09 4.72 16 4 F -0.17 -1.65 16.45 2.25 0.04 -1.61 16 5 F -0.17 -1.74 16.75 2.25 0.04 -1.70 16 6 F -0.17 -1.83 16.62 2.25 0.04 -1.79 16 7 C 0.09 0.93 5.05 -3.53 -0.02 0.91 16 8 N -0.61 -6.55 2.54 -172.28 -0.44 -6.99 16 9 C 0.53 7.03 6.96 -10.99 -0.08 6.95 16 10 O -0.53 -8.59 15.72 5.56 0.09 -8.50 16 11 C 0.08 0.95 2.36 -68.86 -0.16 0.79 16 12 H 0.10 1.07 6.51 -51.93 -0.34 0.73 16 13 N -0.83 -10.64 8.94 -5.65 -0.05 -10.69 16 14 C -0.15 -2.19 4.65 -26.73 -0.12 -2.32 16 15 C -0.11 -1.91 4.92 -26.73 -0.13 -2.05 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 21 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.07 0.54 5.76 -3.53 -0.02 0.52 16 26 C 0.05 0.32 6.60 37.31 0.25 0.57 16 27 O -0.36 -3.32 10.12 -35.23 -0.36 -3.68 16 28 H 0.08 0.58 7.80 -51.93 -0.41 0.18 16 29 H 0.09 0.71 6.12 -51.93 -0.32 0.39 16 30 H 0.08 0.68 7.80 -51.93 -0.41 0.27 16 31 H 0.09 0.89 7.62 -51.93 -0.40 0.49 16 32 H 0.11 1.27 6.98 -51.93 -0.36 0.91 16 33 H 0.35 4.22 7.55 -39.29 -0.30 3.93 16 34 H 0.35 4.73 8.58 -39.29 -0.34 4.39 16 35 H 0.07 0.96 7.27 -51.93 -0.38 0.58 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.85 6.87 -51.93 -0.36 0.49 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.11 0.82 5.38 -51.93 -0.28 0.54 16 44 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.43 6.26 -51.93 -0.32 0.10 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -31.74 367.58 -6.17 -37.92 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.27 Total: 4.12 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.51 Total: -3.11 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.25 Total: -43.15 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.27 Total: -12.17 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.74 -6.17 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877234860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.835 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds