Wall clock time and date at job start Tue Mar 31 2020 21:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.51628 * 2 1 4 4 F 1.39905 * 109.47157 * 59.99826 * 3 2 1 5 5 F 1.39900 * 109.47010 * 300.00217 * 3 2 1 6 6 F 1.39897 * 109.47422 * 179.97438 * 3 2 1 7 7 C 1.53294 * 109.51058 * 120.10204 * 2 1 3 8 8 N 1.47151 * 108.38883 * 67.67114 * 7 2 1 9 9 C 1.34777 * 120.98405 * 230.55850 * 8 7 2 10 10 O 1.21272 * 119.99879 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99920 * 179.97438 * 9 8 7 12 12 H 1.09007 * 109.47315 * 320.00250 * 11 9 8 13 13 N 1.46903 * 109.47148 * 200.00053 * 11 9 8 14 14 C 1.53000 * 109.46935 * 79.99864 * 11 9 8 15 15 C 1.53001 * 109.47202 * 184.99727 * 14 11 9 16 16 C 1.52996 * 109.47045 * 180.02562 * 15 14 11 17 17 C 1.50708 * 109.47262 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99235 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00202 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00228 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99587 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47528 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46940 * 120.00275 * 21 19 17 24 24 H 1.48505 * 109.47075 * 239.99828 * 21 19 17 25 25 C 1.47155 * 118.03519 * 50.53190 * 8 7 2 26 26 C 1.53296 * 108.38397 * 309.47104 * 25 8 7 27 27 O 1.42956 * 109.26744 * 52.27406 * 26 25 8 28 28 H 1.09001 * 109.46855 * 60.00000 * 1 2 3 29 29 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46792 * 300.00354 * 1 2 3 31 31 H 1.09004 * 109.68242 * 187.39352 * 7 2 1 32 32 H 1.09000 * 109.68286 * 307.90774 * 7 2 1 33 33 H 1.00902 * 110.99736 * 176.04743 * 13 11 9 34 34 H 1.00902 * 111.00031 * 300.00085 * 13 11 9 35 35 H 1.08995 * 109.47556 * 305.00095 * 14 11 9 36 36 H 1.09000 * 109.46962 * 65.00096 * 14 11 9 37 37 H 1.08996 * 109.47382 * 300.00108 * 15 14 11 38 38 H 1.09000 * 109.46861 * 60.00307 * 15 14 11 39 39 H 1.09001 * 109.47460 * 299.99723 * 16 15 14 40 40 H 1.09000 * 109.47309 * 60.00252 * 16 15 14 41 41 H 0.96999 * 120.00305 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.68076 * 69.19090 * 25 8 7 43 43 H 1.09002 * 109.68349 * 189.70892 * 25 8 7 44 44 H 1.08997 * 109.51312 * 172.22351 * 26 25 8 45 45 H 1.09004 * 109.51505 * 292.32343 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 9 1.5752 2.1020 1.1423 5 9 1.5752 2.1019 -1.1423 6 9 3.4401 1.4410 0.0006 7 6 2.0420 -0.7247 1.2500 8 7 1.6969 -2.1505 1.1340 9 6 1.0718 -2.7970 2.1379 10 8 0.7857 -2.2034 3.1560 11 6 0.7284 -4.2573 1.9952 12 1 0.3784 -4.4509 0.9811 13 7 -0.3287 -4.6077 2.9532 14 6 1.9719 -5.1034 2.2757 15 6 1.6568 -6.5769 2.0100 16 6 2.9002 -7.4230 2.2911 17 6 2.5901 -8.8743 2.0287 18 1 1.6046 -9.1641 1.6952 19 6 3.5644 -9.8319 2.2144 20 7 4.7646 -9.4790 2.6200 21 14 3.1797 -11.6308 1.8899 22 1 1.7690 -11.7630 1.4451 23 1 4.0828 -12.1467 0.8299 24 1 3.3817 -12.4129 3.1360 25 6 2.0541 -2.8495 -0.1107 26 6 1.5415 -2.0212 -1.2944 27 8 2.0075 -0.6759 -1.1657 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1239 -0.6135 1.3216 32 1 1.5702 -0.3033 2.1377 33 1 -0.6220 -5.5657 2.8336 34 1 -0.0285 -4.4371 3.9013 35 1 2.7845 -4.7824 1.6241 36 1 2.2697 -4.9776 3.3167 37 1 0.8443 -6.8980 2.6616 38 1 1.3591 -6.7027 0.9690 39 1 3.7130 -7.1021 1.6397 40 1 3.1976 -7.2971 3.3322 41 1 5.4502 -10.1526 2.7503 42 1 3.1372 -2.9522 -0.1762 43 1 1.5904 -3.8358 -0.1239 44 1 1.9140 -2.4479 -2.2257 45 1 0.4516 -2.0300 -1.3002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877234860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:58 Heat of formation + Delta-G solvation = -258.427841 kcal Electronic energy + Delta-G solvation = -31066.096143 eV Core-core repulsion = 26281.549256 eV Total energy + Delta-G solvation = -4784.546887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.28041 -48.78616 -48.73960 -41.91037 -40.04521 -37.47802 -36.07560 -35.30795 -34.39905 -32.98838 -30.33198 -29.69284 -28.41222 -27.67815 -26.19650 -24.66374 -24.03536 -22.00127 -21.55103 -20.24475 -19.71335 -19.51325 -19.24102 -18.57804 -18.45552 -17.58172 -17.13778 -16.56441 -16.39473 -16.23586 -16.10077 -15.89256 -15.62389 -15.46514 -15.36923 -15.16561 -15.08503 -14.90520 -14.88802 -14.79499 -14.39745 -14.26160 -14.07628 -13.72094 -13.61250 -13.27903 -13.19613 -12.89238 -12.73233 -12.67796 -12.54418 -12.37727 -12.35075 -11.89193 -11.50506 -11.44516 -11.39086 -11.23250 -10.78417 -10.55920 -9.83097 -9.68831 -8.19750 -6.30600 1.22723 1.40575 1.41651 1.43870 1.54054 1.56231 2.18526 2.41277 2.64326 2.71623 3.14369 3.15955 3.27748 3.40996 3.52687 3.62624 3.79972 3.90096 3.98010 4.07586 4.13080 4.25169 4.35381 4.39498 4.41593 4.48111 4.55510 4.71610 4.75877 4.80088 4.97622 5.00482 5.13290 5.19049 5.25102 5.53703 5.66063 5.74351 5.86558 5.95835 6.18280 6.24550 6.47069 6.88254 6.97399 7.39529 8.92016 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.002366 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.119652 B =11830.345106 C =12246.516040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 C 0.473 3.527 4 F -0.172 7.172 5 F -0.173 7.173 6 F -0.179 7.179 7 C 0.088 3.912 8 N -0.608 5.608 9 C 0.529 3.471 10 O -0.562 6.562 11 C 0.087 3.913 12 H 0.129 0.871 13 N -0.831 5.831 14 C -0.137 4.137 15 C -0.093 4.093 16 C 0.023 3.977 17 C -0.538 4.538 18 H 0.065 0.935 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.962 3.038 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.283 1.283 25 C 0.058 3.942 26 C 0.045 3.955 27 O -0.366 6.366 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.359 0.641 34 H 0.345 0.655 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.069 0.931 39 H -0.007 1.007 40 H -0.018 1.018 41 H 0.262 0.738 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.146 0.854 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 20.398 -9.947 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.025 3.975 3 C 0.418 3.582 4 F -0.153 7.153 5 F -0.154 7.154 6 F -0.160 7.160 7 C -0.036 4.036 8 N -0.342 5.342 9 C 0.318 3.682 10 O -0.440 6.440 11 C -0.028 4.028 12 H 0.146 0.854 13 N -0.364 5.364 14 C -0.177 4.177 15 C -0.130 4.130 16 C -0.014 4.014 17 C -0.576 4.576 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.182 1.182 23 H -0.205 1.205 24 H -0.209 1.209 25 C -0.064 4.064 26 C -0.031 4.031 27 O -0.285 6.285 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.011 0.989 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.139 0.861 44 H 0.164 0.836 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.562 21.315 -9.853 25.354 hybrid contribution 1.247 -1.467 0.788 2.080 sum -8.314 19.848 -9.065 23.351 Atomic orbital electron populations 1.22411 0.90404 1.05551 1.05149 1.22695 0.97466 0.87941 0.89401 1.19954 0.75575 0.88823 0.73819 1.93221 1.88491 1.82724 1.50886 1.93198 1.88319 1.83033 1.50895 1.93203 1.29787 1.96929 1.96103 1.22108 1.01856 0.82132 0.97486 1.48004 1.59070 1.09537 1.17593 1.20932 0.75562 0.89561 0.82158 1.90657 1.54149 1.69146 1.30005 1.21417 0.92023 0.89128 1.00270 0.85378 1.58729 1.38862 1.30298 1.08473 1.22266 0.97793 0.96017 1.01600 1.21422 0.98141 0.92097 1.01384 1.19008 0.93856 0.94155 0.94393 1.21762 0.97852 0.93461 1.44528 0.91700 1.25976 0.94924 1.04051 0.95057 1.70103 1.04201 1.35257 1.48046 0.85447 0.78873 0.79314 0.77712 1.18186 1.20541 1.20905 1.22894 1.03044 0.97922 0.82515 1.23438 1.00826 0.79264 0.99523 1.88020 1.72459 1.27797 1.40238 0.89036 0.89339 0.89934 0.89503 0.87863 0.82518 0.84166 0.90919 0.93573 0.92605 0.91227 0.98852 0.99971 0.92928 0.89332 0.86073 0.83617 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 7.85 71.98 0.57 -2.01 16 2 C 0.07 1.16 0.59 -10.70 -0.01 1.15 16 3 C 0.47 8.86 2.38 71.98 0.17 9.03 16 4 F -0.17 -3.24 16.45 44.97 0.74 -2.50 16 5 F -0.17 -3.31 16.75 44.97 0.75 -2.55 16 6 F -0.18 -3.72 16.62 44.97 0.75 -2.97 16 7 C 0.09 1.76 5.05 86.35 0.44 2.19 16 8 N -0.61 -12.14 2.54 -817.35 -2.08 -14.21 16 9 C 0.53 13.43 6.96 87.66 0.61 14.04 16 10 O -0.56 -18.31 15.72 -3.01 -0.05 -18.36 16 11 C 0.09 1.99 2.36 44.17 0.10 2.10 16 12 H 0.13 2.26 6.51 -2.38 -0.02 2.25 16 13 N -0.83 -20.07 8.94 -171.79 -1.54 -21.60 16 14 C -0.14 -3.89 4.65 30.59 0.14 -3.74 16 15 C -0.09 -3.17 4.92 30.59 0.15 -3.02 16 16 C 0.02 1.12 4.97 29.85 0.15 1.27 16 17 C -0.54 -28.83 9.11 25.60 0.23 -28.60 16 18 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 20 N -0.94 -55.68 13.29 21.45 0.28 -55.40 16 21 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 C 0.06 0.83 5.76 86.35 0.50 1.32 16 26 C 0.05 0.50 6.60 72.08 0.48 0.98 16 27 O -0.37 -6.09 10.12 -148.98 -1.51 -7.59 16 28 H 0.09 1.13 7.80 -2.39 -0.02 1.11 16 29 H 0.09 1.25 6.12 -2.39 -0.01 1.23 16 30 H 0.08 1.24 7.80 -2.39 -0.02 1.22 16 31 H 0.09 1.74 7.62 -2.39 -0.02 1.72 16 32 H 0.10 2.32 6.98 -2.39 -0.02 2.30 16 33 H 0.36 7.86 7.55 -89.69 -0.68 7.18 16 34 H 0.35 9.12 8.58 -89.69 -0.77 8.36 16 35 H 0.07 1.98 7.27 -2.39 -0.02 1.97 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.84 6.87 -2.39 -0.02 1.82 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.12 1.43 5.38 -2.39 -0.01 1.41 16 44 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 0.73 6.26 -2.38 -0.01 0.71 16 Total: -1.00 -68.82 367.58 2.98 -65.85 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.40 Total: 19.63 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 3.99 Total: -4.96 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -3.33 Total: -91.21 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.55 Total: -25.95 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 2.24 Total: -8.03 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -68.82 2.98 -65.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877234860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.581 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds