Wall clock time and date at job start Tue Mar 31 2020 20:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.48098 * 2 1 4 4 C 1.53100 * 109.47571 * 239.96750 * 2 1 3 5 5 C 1.53311 * 109.19441 * 297.62406 * 4 2 1 6 6 H 1.09002 * 109.52711 * 62.87886 * 5 4 2 7 7 C 1.52996 * 109.62256 * 183.18636 * 5 4 2 8 8 N 1.46508 * 109.46848 * 184.52183 * 7 5 4 9 9 C 1.34776 * 119.99638 * 180.02562 * 8 7 5 10 10 O 1.21585 * 120.00220 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99877 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00441 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46905 * 324.99814 * 12 11 9 14 14 C 1.50695 * 109.47319 * 205.00158 * 12 11 9 15 15 H 1.08010 * 119.99949 * 359.97438 * 14 12 11 16 16 C 1.37878 * 120.00235 * 180.02562 * 14 12 11 17 17 N 1.31519 * 119.99598 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00251 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47197 * 89.99538 * 18 16 14 20 20 H 1.48498 * 109.47340 * 209.99620 * 18 16 14 21 21 H 1.48501 * 109.47234 * 329.99467 * 18 16 14 22 22 C 1.52995 * 109.47131 * 84.99654 * 12 11 9 23 23 F 1.39902 * 109.47060 * 60.00573 * 22 12 11 24 24 F 1.39898 * 109.46967 * 180.02562 * 22 12 11 25 25 F 1.39901 * 109.47183 * 300.00437 * 22 12 11 26 26 C 1.53177 * 108.96735 * 303.05955 * 5 4 2 27 27 C 1.53098 * 109.21356 * 56.95427 * 26 5 4 28 28 O 1.42899 * 109.41440 * 302.35638 * 27 26 5 29 29 H 1.08995 * 109.46974 * 299.97600 * 1 2 3 30 30 H 1.08998 * 109.46867 * 59.97259 * 1 2 3 31 31 H 1.08994 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47438 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47392 * 300.02501 * 3 2 1 34 34 H 1.09004 * 109.46955 * 60.02588 * 3 2 1 35 35 H 1.08992 * 109.52355 * 57.53561 * 4 2 1 36 36 H 1.08999 * 109.51737 * 177.65906 * 4 2 1 37 37 H 1.09004 * 109.47468 * 304.52025 * 7 5 4 38 38 H 1.09001 * 109.47474 * 64.52577 * 7 5 4 39 39 H 0.96995 * 119.99967 * 0.02562 * 8 7 5 40 40 H 0.97006 * 119.99968 * 359.97438 * 11 9 8 41 41 H 0.97001 * 119.99513 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.52487 * 297.01638 * 26 5 4 43 43 H 1.09004 * 109.52023 * 176.89257 * 26 5 4 44 44 H 1.08999 * 109.47859 * 62.34349 * 27 26 5 45 45 H 1.09000 * 109.47836 * 182.37389 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7224 -1.2496 5 6 1.5756 -2.1829 -1.2127 6 1 0.4866 -2.2194 -1.2413 7 6 2.1466 -2.9344 -2.4169 8 7 1.6143 -4.2992 -2.4380 9 6 1.9818 -5.1507 -3.4159 10 8 2.7547 -4.7862 -4.2807 11 7 1.4917 -6.4060 -3.4356 12 6 1.8907 -7.3316 -4.4988 13 1 2.0217 -6.7805 -5.4300 14 6 0.8221 -8.3784 -4.6807 15 1 -0.0654 -8.3568 -4.0655 16 6 0.9777 -9.3645 -5.6317 17 7 2.0587 -9.3912 -6.3805 18 14 -0.3466 -10.6626 -5.8568 19 1 -1.3332 -10.1940 -6.8629 20 1 0.2746 -11.9277 -6.3246 21 1 -1.0341 -10.8981 -4.5617 22 6 3.2085 -8.0089 -4.1174 23 9 3.0404 -8.7163 -2.9222 24 9 3.5898 -8.8923 -5.1330 25 9 4.2005 -7.0370 -3.9485 26 6 2.0764 -2.8323 0.0810 27 6 1.5645 -2.0283 1.2792 28 8 2.0066 -0.6742 1.1664 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5143 -0.8897 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1303 1.4422 -0.0005 33 1 1.6767 1.9564 -0.8897 34 1 1.6774 1.9561 0.8903 35 1 1.6421 -0.2359 -2.1399 36 1 3.1297 -0.6866 -1.2715 37 1 1.8626 -2.4194 -3.3347 38 1 3.2334 -2.9695 -2.3414 39 1 0.9974 -4.5898 -1.7482 40 1 0.8748 -6.6968 -2.7458 41 1 2.1680 -10.0847 -7.0498 42 1 3.1664 -2.8401 0.0865 43 1 1.7045 -3.8550 0.1429 44 1 0.4749 -2.0549 1.2959 45 1 1.9530 -2.4621 2.2006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932897171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:45 Heat of formation + Delta-G solvation = -228.044371 kcal Electronic energy + Delta-G solvation = -31033.547061 eV Core-core repulsion = 26250.317700 eV Total energy + Delta-G solvation = -4783.229361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.30205 -45.95443 -45.57293 -40.44699 -39.21995 -35.92532 -34.51744 -33.89909 -32.88642 -32.31813 -29.13336 -28.19902 -27.64618 -25.84399 -24.52197 -23.59704 -21.78230 -21.01990 -20.20774 -19.46690 -18.31686 -16.90820 -16.79569 -16.57842 -16.52246 -16.14445 -16.00615 -15.41328 -15.23949 -14.80887 -14.73378 -14.35547 -14.08765 -13.71227 -13.36032 -13.23809 -13.01512 -12.86558 -12.53098 -12.49728 -12.35594 -12.31687 -12.26330 -12.15906 -12.12051 -11.93913 -11.93040 -11.78002 -11.39377 -11.19518 -11.10751 -10.87862 -10.83745 -10.74472 -10.39354 -10.29995 -9.67883 -9.63732 -9.51390 -8.78521 -8.69824 -8.14247 -6.22850 -4.46651 3.16391 3.18992 3.25502 3.29149 3.49679 3.80973 4.19066 4.37097 4.42709 4.47323 4.58146 4.61064 4.73661 4.88930 4.94501 4.94941 5.10547 5.14165 5.18608 5.30480 5.37384 5.43628 5.46737 5.55621 5.61759 5.73187 5.74275 5.82222 5.86572 5.89261 5.91818 5.96146 5.98009 6.18097 6.25404 6.80451 6.86326 7.03615 7.22864 7.38478 7.63272 7.70177 8.50237 8.67764 9.16152 9.27311 10.68791 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.002554 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.195217 B =10958.846373 C =11321.334895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.112 3.888 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.101 4.101 6 H 0.080 0.920 7 C 0.148 3.852 8 N -0.753 5.753 9 C 0.698 3.302 10 O -0.584 6.584 11 N -0.727 5.727 12 C 0.263 3.737 13 H 0.085 0.915 14 C -0.552 4.552 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.416 3.584 23 F -0.211 7.211 24 F -0.138 7.138 25 F -0.217 7.217 26 C -0.152 4.152 27 C 0.059 3.941 28 O -0.375 6.375 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.391 0.609 40 H 0.393 0.607 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 15.567 12.929 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.073 3.927 3 C -0.195 4.195 4 C -0.173 4.173 5 C -0.120 4.120 6 H 0.098 0.902 7 C 0.023 3.977 8 N -0.410 5.410 9 C 0.397 3.603 10 O -0.461 6.461 11 N -0.380 5.380 12 C 0.156 3.844 13 H 0.102 0.898 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.196 1.196 22 C 0.359 3.641 23 F -0.193 7.193 24 F -0.119 7.119 25 F -0.199 7.199 26 C -0.189 4.189 27 C -0.018 4.018 28 O -0.294 6.294 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.224 0.776 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.853 15.868 12.056 20.132 hybrid contribution -1.068 -1.381 0.405 1.792 sum -3.921 14.487 12.461 19.507 Atomic orbital electron populations 1.22465 0.95783 1.02773 1.02737 1.21462 0.93057 0.92778 0.85430 1.21756 1.02052 0.93293 1.02422 1.22183 1.02289 0.94571 0.98236 1.21506 1.00906 0.94933 0.94660 0.90214 1.21094 0.98491 0.80997 0.97086 1.45086 1.52422 1.13032 1.30483 1.16075 0.81031 0.81077 0.82070 1.90917 1.38754 1.77088 1.39380 1.45263 1.50056 1.10742 1.31901 1.19580 0.88990 0.88369 0.87415 0.89775 1.20878 1.04499 1.11781 1.21745 0.90536 1.25085 0.96066 0.97950 0.95337 1.70412 1.23984 1.33528 1.19330 0.86211 0.80794 0.80111 0.78688 1.20218 1.20799 1.19562 1.23182 0.88606 0.77886 0.74408 1.92981 1.95885 1.80666 1.49721 1.93399 1.92207 1.68845 1.57429 1.93073 1.66747 1.64379 1.95656 1.22271 1.02506 0.99693 0.94479 1.22582 0.98689 0.82124 0.98361 1.87965 1.73762 1.24635 1.43075 0.91938 0.91402 0.91764 0.91738 0.91067 0.91900 0.90495 0.90544 0.91767 0.91757 0.77590 0.77333 0.92127 0.90634 0.90662 0.92935 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 7.93 37.16 0.29 -0.98 16 2 C 0.11 0.92 1.11 -90.57 -0.10 0.82 16 3 C -0.14 -0.97 8.85 37.15 0.33 -0.65 16 4 C -0.13 -1.14 4.22 -26.52 -0.11 -1.25 16 5 C -0.10 -0.92 2.01 -90.37 -0.18 -1.10 16 6 H 0.08 0.67 6.62 -51.93 -0.34 0.32 16 7 C 0.15 1.86 5.08 -4.04 -0.02 1.84 16 8 N -0.75 -10.77 5.32 -65.22 -0.35 -11.12 16 9 C 0.70 13.96 8.10 -86.92 -0.70 13.26 16 10 O -0.58 -14.21 14.92 5.29 0.08 -14.13 16 11 N -0.73 -14.89 4.99 -59.82 -0.30 -15.19 16 12 C 0.26 6.58 2.21 -69.09 -0.15 6.43 16 13 H 0.08 2.38 7.58 -51.93 -0.39 1.98 16 14 C -0.55 -14.07 8.46 -34.44 -0.29 -14.37 16 15 H 0.08 1.83 7.74 -52.48 -0.41 1.43 16 16 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -23.11 9.50 55.43 0.53 -22.58 16 18 Si 0.92 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 C 0.42 10.81 2.81 37.16 0.10 10.92 16 23 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 24 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 25 F -0.22 -5.65 15.68 2.25 0.04 -5.62 16 26 C -0.15 -1.35 5.25 -26.59 -0.14 -1.49 16 27 C 0.06 0.49 6.52 37.21 0.24 0.73 16 28 O -0.37 -3.73 10.24 -35.23 -0.36 -4.09 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.46 4.98 -51.93 -0.26 0.20 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.39 4.40 7.69 -40.82 -0.31 4.09 16 40 H 0.39 6.86 8.55 -40.82 -0.35 6.51 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.63 7.28 -51.93 -0.38 0.25 16 44 H 0.05 0.39 6.34 -51.93 -0.33 0.06 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -31.57 363.74 -7.22 -38.79 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.56 Total: 6.72 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -0.82 Total: 15.75 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.12 Total: -48.89 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.28 Total: -18.23 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.65 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.57 -7.22 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.258 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds