Wall clock time and date at job start Tue Mar 31 2020 20:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.48098 * 2 1 4 4 C 1.53100 * 109.47571 * 239.96750 * 2 1 3 5 5 C 1.53311 * 109.19441 * 297.62406 * 4 2 1 6 6 H 1.09002 * 109.52711 * 62.87886 * 5 4 2 7 7 C 1.52996 * 109.62256 * 183.18636 * 5 4 2 8 8 N 1.46508 * 109.46848 * 184.52183 * 7 5 4 9 9 C 1.34776 * 119.99638 * 180.02562 * 8 7 5 10 10 O 1.21585 * 120.00220 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99877 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00441 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46905 * 324.99814 * 12 11 9 14 14 C 1.50695 * 109.47319 * 205.00158 * 12 11 9 15 15 H 1.08010 * 119.99949 * 359.97438 * 14 12 11 16 16 C 1.37878 * 120.00235 * 180.02562 * 14 12 11 17 17 N 1.31519 * 119.99598 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00251 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47197 * 89.99538 * 18 16 14 20 20 H 1.48498 * 109.47340 * 209.99620 * 18 16 14 21 21 H 1.48501 * 109.47234 * 329.99467 * 18 16 14 22 22 C 1.52995 * 109.47131 * 84.99654 * 12 11 9 23 23 F 1.39902 * 109.47060 * 60.00573 * 22 12 11 24 24 F 1.39898 * 109.46967 * 180.02562 * 22 12 11 25 25 F 1.39901 * 109.47183 * 300.00437 * 22 12 11 26 26 C 1.53177 * 108.96735 * 303.05955 * 5 4 2 27 27 C 1.53098 * 109.21356 * 56.95427 * 26 5 4 28 28 O 1.42899 * 109.41440 * 302.35638 * 27 26 5 29 29 H 1.08995 * 109.46974 * 299.97600 * 1 2 3 30 30 H 1.08998 * 109.46867 * 59.97259 * 1 2 3 31 31 H 1.08994 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47438 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47392 * 300.02501 * 3 2 1 34 34 H 1.09004 * 109.46955 * 60.02588 * 3 2 1 35 35 H 1.08992 * 109.52355 * 57.53561 * 4 2 1 36 36 H 1.08999 * 109.51737 * 177.65906 * 4 2 1 37 37 H 1.09004 * 109.47468 * 304.52025 * 7 5 4 38 38 H 1.09001 * 109.47474 * 64.52577 * 7 5 4 39 39 H 0.96995 * 119.99967 * 0.02562 * 8 7 5 40 40 H 0.97006 * 119.99968 * 359.97438 * 11 9 8 41 41 H 0.97001 * 119.99513 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.52487 * 297.01638 * 26 5 4 43 43 H 1.09004 * 109.52023 * 176.89257 * 26 5 4 44 44 H 1.08999 * 109.47859 * 62.34349 * 27 26 5 45 45 H 1.09000 * 109.47836 * 182.37389 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7224 -1.2496 5 6 1.5756 -2.1829 -1.2127 6 1 0.4866 -2.2194 -1.2413 7 6 2.1466 -2.9344 -2.4169 8 7 1.6143 -4.2992 -2.4380 9 6 1.9818 -5.1507 -3.4159 10 8 2.7547 -4.7862 -4.2807 11 7 1.4917 -6.4060 -3.4356 12 6 1.8907 -7.3316 -4.4988 13 1 2.0217 -6.7805 -5.4300 14 6 0.8221 -8.3784 -4.6807 15 1 -0.0654 -8.3568 -4.0655 16 6 0.9777 -9.3645 -5.6317 17 7 2.0587 -9.3912 -6.3805 18 14 -0.3466 -10.6626 -5.8568 19 1 -1.3332 -10.1940 -6.8629 20 1 0.2746 -11.9277 -6.3246 21 1 -1.0341 -10.8981 -4.5617 22 6 3.2085 -8.0089 -4.1174 23 9 3.0404 -8.7163 -2.9222 24 9 3.5898 -8.8923 -5.1330 25 9 4.2005 -7.0370 -3.9485 26 6 2.0764 -2.8323 0.0810 27 6 1.5645 -2.0283 1.2792 28 8 2.0066 -0.6742 1.1664 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5143 -0.8897 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1303 1.4422 -0.0005 33 1 1.6767 1.9564 -0.8897 34 1 1.6774 1.9561 0.8903 35 1 1.6421 -0.2359 -2.1399 36 1 3.1297 -0.6866 -1.2715 37 1 1.8626 -2.4194 -3.3347 38 1 3.2334 -2.9695 -2.3414 39 1 0.9974 -4.5898 -1.7482 40 1 0.8748 -6.6968 -2.7458 41 1 2.1680 -10.0847 -7.0498 42 1 3.1664 -2.8401 0.0865 43 1 1.7045 -3.8550 0.1429 44 1 0.4749 -2.0549 1.2959 45 1 1.9530 -2.4621 2.2006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932897171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:44 Heat of formation + Delta-G solvation = -249.374178 kcal Electronic energy + Delta-G solvation = -31034.471991 eV Core-core repulsion = 26250.317700 eV Total energy + Delta-G solvation = -4784.154291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39774 -48.03208 -47.71130 -41.30676 -40.64036 -37.12697 -36.25296 -34.62284 -34.46256 -33.69238 -30.43556 -29.42957 -28.19903 -26.92243 -26.50355 -24.35506 -23.53056 -21.96046 -21.85324 -20.24311 -19.88693 -18.86327 -18.76873 -18.54768 -17.89344 -17.21699 -16.88885 -16.82561 -16.50770 -16.37439 -15.68519 -15.45735 -15.22944 -15.04521 -14.95776 -14.81533 -14.48108 -14.42605 -14.27752 -14.05870 -14.01283 -13.88449 -13.86268 -13.17479 -13.09405 -13.03249 -12.88897 -12.78326 -12.72383 -12.59837 -12.53615 -12.20511 -12.02936 -11.87684 -11.57723 -11.57322 -11.28170 -10.93779 -10.67320 -10.33540 -10.30561 -9.76123 -8.20155 -6.51087 1.47167 1.48812 1.59601 1.74501 2.15438 2.37980 2.57812 2.88237 2.95691 3.31167 3.61913 3.72845 3.77345 3.81233 3.89765 3.95170 4.13469 4.21145 4.29769 4.40568 4.44850 4.49220 4.65487 4.72060 4.78125 4.82723 4.84349 4.93109 4.94441 4.96145 5.08084 5.14272 5.16286 5.24428 5.37969 5.44472 5.46470 5.52884 5.57547 5.66575 6.14303 6.40759 6.54374 7.17173 7.22262 7.66861 8.72724 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.002554 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.195217 B =10958.846373 C =11321.334895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.134 4.134 5 C -0.088 4.088 6 H 0.097 0.903 7 C 0.148 3.852 8 N -0.728 5.728 9 C 0.693 3.307 10 O -0.631 6.631 11 N -0.720 5.720 12 C 0.271 3.729 13 H 0.045 0.955 14 C -0.561 4.561 15 H 0.094 0.906 16 C 0.014 3.986 17 N -0.876 5.876 18 Si 0.984 3.016 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.257 1.257 22 C 0.412 3.588 23 F -0.203 7.203 24 F -0.151 7.151 25 F -0.220 7.220 26 C -0.151 4.151 27 C 0.059 3.941 28 O -0.395 6.395 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.410 0.590 40 H 0.410 0.590 41 H 0.268 0.732 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.114 15.825 14.408 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.069 3.931 3 C -0.196 4.196 4 C -0.172 4.172 5 C -0.107 4.107 6 H 0.115 0.885 7 C 0.024 3.976 8 N -0.385 5.385 9 C 0.393 3.607 10 O -0.512 6.512 11 N -0.374 5.374 12 C 0.163 3.837 13 H 0.063 0.937 14 C -0.597 4.597 15 H 0.112 0.888 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.808 3.192 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.181 1.181 22 C 0.355 3.645 23 F -0.185 7.185 24 F -0.133 7.133 25 F -0.202 7.202 26 C -0.188 4.188 27 C -0.018 4.018 28 O -0.315 6.315 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.247 0.753 40 H 0.247 0.753 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.158 16.159 13.613 21.750 hybrid contribution -0.304 -1.387 -0.025 1.420 sum -5.462 14.772 13.588 20.801 Atomic orbital electron populations 1.22447 0.94615 1.03083 1.03374 1.21589 0.93958 0.92988 0.84539 1.21786 1.01613 0.92893 1.03269 1.22189 1.01684 0.94210 0.99132 1.21425 1.01583 0.94764 0.92942 0.88515 1.21212 0.97671 0.80069 0.98643 1.44881 1.51714 1.12806 1.29145 1.16284 0.80601 0.81263 0.82534 1.90888 1.40861 1.77889 1.41530 1.44978 1.50442 1.10520 1.31451 1.19154 0.88736 0.88589 0.87207 0.93725 1.21231 1.04906 1.11650 1.21946 0.88850 1.26021 0.98093 1.00134 0.94903 1.70547 1.26033 1.34344 1.20033 0.85143 0.77966 0.76969 0.79146 1.19547 1.21124 1.18122 1.23382 0.88939 0.77787 0.74348 1.92980 1.95849 1.80519 1.49156 1.93372 1.92385 1.69347 1.58148 1.93063 1.66994 1.64470 1.95660 1.22260 1.01530 1.00305 0.94738 1.22661 0.99522 0.81397 0.98189 1.87950 1.74341 1.25374 1.43814 0.91761 0.90368 0.91571 0.92509 0.89582 0.91704 0.89461 0.91715 0.92400 0.93540 0.75340 0.75348 0.92187 0.92295 0.89901 0.91507 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 7.93 71.98 0.57 -1.48 16 2 C 0.11 1.58 1.11 -10.76 -0.01 1.57 16 3 C -0.14 -1.75 8.85 71.98 0.64 -1.11 16 4 C -0.13 -2.08 4.22 30.73 0.13 -1.95 16 5 C -0.09 -1.45 2.01 -10.63 -0.02 -1.47 16 6 H 0.10 1.32 6.62 -2.39 -0.02 1.30 16 7 C 0.15 3.61 5.08 86.38 0.44 4.05 16 8 N -0.73 -19.89 5.32 -478.52 -2.54 -22.43 16 9 C 0.69 27.59 8.10 179.06 1.45 29.04 16 10 O -0.63 -31.37 14.92 -3.98 -0.06 -31.42 16 11 N -0.72 -29.04 4.99 -461.43 -2.30 -31.34 16 12 C 0.27 13.71 2.21 44.24 0.10 13.81 16 13 H 0.05 2.63 7.58 -2.39 -0.02 2.61 16 14 C -0.56 -28.16 8.46 25.60 0.22 -27.94 16 15 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 16 C 0.01 0.70 5.20 84.65 0.44 1.15 16 17 N -0.88 -48.75 9.50 21.45 0.20 -48.54 16 18 Si 0.98 40.23 29.54 68.60 2.03 42.26 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 22 C 0.41 21.66 2.81 71.98 0.20 21.86 16 23 F -0.20 -10.01 16.94 44.97 0.76 -9.25 16 24 F -0.15 -8.64 12.91 44.97 0.58 -8.06 16 25 F -0.22 -11.68 15.68 44.97 0.70 -10.97 16 26 C -0.15 -2.43 5.25 30.69 0.16 -2.27 16 27 C 0.06 0.85 6.52 72.01 0.47 1.32 16 28 O -0.39 -7.27 10.24 -148.98 -1.52 -8.79 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.73 4.98 -2.39 -0.01 0.72 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.41 8.20 7.69 -92.71 -0.71 7.48 16 40 H 0.41 13.55 8.55 -92.70 -0.79 12.75 16 41 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.20 7.28 -2.38 -0.02 1.18 16 44 H 0.07 0.79 6.34 -2.39 -0.02 0.77 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -68.62 363.74 2.16 -66.47 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.47 Total: 25.53 kcal Atomic # 6 Polarization: 31.79 SS G_CDS: 4.78 Total: 36.57 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -4.64 Total: -102.32 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.58 Total: -40.22 kcal Atomic # 9 Polarization: -30.33 SS G_CDS: 2.05 Total: -28.28 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -68.62 2.16 -66.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.906 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds