Wall clock time and date at job start Tue Mar 31 2020 21:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30879 * 122.98807 * 2 1 4 4 C 1.30224 * 117.26269 * 180.33239 * 3 2 1 5 5 N 1.37851 * 124.74784 * 179.67012 * 4 3 2 6 6 C 1.46495 * 119.99789 * 0.03967 * 5 4 3 7 7 C 1.46499 * 119.99867 * 180.02562 * 5 4 3 8 8 S 1.70919 * 110.50739 * 359.70517 * 4 3 2 9 9 C 1.36708 * 122.98154 * 179.79193 * 2 1 3 10 10 C 1.46218 * 126.11256 * 359.97438 * 9 2 1 11 11 O 1.21757 * 119.99965 * 359.72182 * 10 9 2 12 12 N 1.34776 * 120.00072 * 179.72039 * 10 9 2 13 13 C 1.47431 * 125.64871 * 180.02562 * 12 10 9 14 14 C 1.55115 * 104.94146 * 203.96579 * 13 12 10 15 15 H 1.08998 * 110.93900 * 81.21673 * 14 13 12 16 16 C 1.53002 * 111.16368 * 205.13005 * 14 13 12 17 17 C 1.55164 * 101.48797 * 323.22183 * 14 13 12 18 18 H 1.09002 * 110.71528 * 276.83147 * 17 14 13 19 19 N 1.46496 * 110.71857 * 153.73591 * 17 14 13 20 20 C 1.36945 * 119.99718 * 157.44207 * 19 17 14 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 17 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47023 * 125.64976 * 359.97266 * 12 10 9 29 29 H 1.08992 * 109.47288 * 270.21322 * 1 2 3 30 30 H 1.09013 * 109.46792 * 30.21135 * 1 2 3 31 31 H 1.08999 * 109.47275 * 150.20297 * 1 2 3 32 32 H 1.09013 * 109.47152 * 89.99980 * 6 5 4 33 33 H 1.09002 * 109.47632 * 209.99917 * 6 5 4 34 34 H 1.09000 * 109.47244 * 330.00073 * 6 5 4 35 35 H 1.08995 * 109.47379 * 0.02562 * 7 5 4 36 36 H 1.09008 * 109.46625 * 120.00036 * 7 5 4 37 37 H 1.09004 * 109.47081 * 239.99834 * 7 5 4 38 38 H 1.09002 * 110.36661 * 322.93236 * 13 12 10 39 39 H 1.09001 * 110.36207 * 85.14277 * 13 12 10 40 40 H 1.08994 * 109.47333 * 172.16849 * 16 14 13 41 41 H 1.09002 * 109.47258 * 292.17185 * 16 14 13 42 42 H 1.09005 * 109.46914 * 52.17022 * 16 14 13 43 43 H 0.96996 * 120.00499 * 337.43937 * 19 17 14 44 44 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.88031 * 59.55721 * 28 12 10 46 46 H 1.09004 * 110.01157 * 298.47021 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2196 1.0978 0.0000 4 6 3.5153 0.9679 -0.0067 5 7 4.4101 2.0165 -0.0143 6 6 3.9204 3.3972 -0.0143 7 6 5.8506 1.7502 -0.0220 8 16 3.9514 -0.6847 -0.0058 9 6 2.2512 -1.1468 0.0042 10 6 1.7295 -2.5127 0.0097 11 8 0.5272 -2.7051 0.0160 12 7 2.5793 -3.5587 0.0077 13 6 2.1913 -4.9810 0.0121 14 6 3.4101 -5.7262 0.6167 15 1 3.4010 -5.6688 1.7051 16 6 3.4563 -7.1816 0.1469 17 6 4.5929 -4.9135 0.0267 18 1 4.8306 -5.2548 -0.9809 19 7 5.7695 -5.0065 0.8944 20 6 7.0185 -4.7786 0.3812 21 1 7.1361 -4.5307 -0.6634 22 6 8.1333 -4.8662 1.2035 23 7 7.9901 -5.1688 2.4764 24 14 9.8371 -4.5560 0.5032 25 1 10.4094 -5.8340 0.0089 26 1 9.7422 -3.5890 -0.6198 27 1 10.7142 -3.9983 1.5638 28 6 4.0469 -3.4704 -0.0003 29 1 -0.3633 0.0038 1.0276 30 1 -0.3633 0.8882 -0.5172 31 1 -0.3634 -0.8918 -0.5107 32 1 3.8050 3.7419 1.0135 33 1 4.6346 4.0362 -0.5337 34 1 2.9571 3.4411 -0.5225 35 1 6.0211 0.6737 -0.0210 36 1 6.2961 2.1875 -0.9157 37 1 6.3065 2.1915 0.8644 38 1 1.3077 -5.1313 0.6324 39 1 2.0034 -5.3261 -1.0046 40 1 4.3909 -7.6387 0.4718 41 1 2.6162 -7.7284 0.5751 42 1 3.3947 -7.2144 -0.9409 43 1 5.6640 -5.2295 1.8325 44 1 8.7692 -5.2304 3.0509 45 1 4.3904 -2.9276 0.8803 46 1 4.3851 -2.9628 -0.9037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939267507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:26 Heat of formation + Delta-G solvation = 34.855391 kcal Electronic energy + Delta-G solvation = -27653.555126 eV Core-core repulsion = 23898.628316 eV Total energy + Delta-G solvation = -3754.926809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.12083 -39.44751 -37.56271 -36.71410 -34.10213 -32.56572 -31.21822 -30.73270 -28.62166 -28.46109 -27.54316 -26.44955 -25.78618 -24.02981 -22.20578 -21.82362 -20.72540 -19.98323 -18.41704 -18.21305 -17.19188 -16.52093 -16.43445 -15.95075 -15.59584 -15.16805 -14.79190 -14.56430 -14.18380 -13.85208 -13.61352 -13.48947 -13.18773 -13.07893 -12.93989 -12.84104 -12.66817 -12.40994 -12.37060 -12.35164 -12.33532 -11.97707 -11.54154 -11.20168 -11.05410 -10.98782 -10.81574 -10.63814 -10.30985 -10.03315 -9.93000 -9.89417 -9.74157 -9.34773 -9.11604 -9.03989 -8.38027 -7.52277 -7.14975 -5.90090 -3.21123 0.66551 1.18605 1.84013 2.65624 2.70509 3.28455 3.34378 3.40251 3.41754 3.48999 4.38000 4.46651 4.76533 4.83164 4.98249 5.03764 5.10208 5.17440 5.21024 5.30438 5.32738 5.39903 5.52455 5.54416 5.61211 5.71468 5.78679 5.79680 5.83458 5.87528 5.96027 6.00302 6.16791 6.20807 6.32117 6.34098 6.43950 6.50661 6.55632 6.61824 6.82521 6.82885 7.58136 7.77440 7.93361 8.26795 8.42090 9.39156 9.92458 10.27851 11.31641 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009271 B = 0.004536 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.383237 B = 6171.153397 C = 8911.169307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.198 3.802 3 N -0.561 5.561 4 C 0.297 3.703 5 N -0.581 5.581 6 C 0.100 3.900 7 C 0.089 3.911 8 S 0.178 5.822 9 C -0.353 4.353 10 C 0.617 3.383 11 O -0.548 6.548 12 N -0.612 5.612 13 C 0.118 3.882 14 C -0.114 4.114 15 H 0.084 0.916 16 C -0.133 4.133 17 C 0.183 3.817 18 H 0.070 0.930 19 N -0.710 5.710 20 C -0.249 4.249 21 H 0.073 0.927 22 C -0.006 4.006 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.288 1.288 26 H -0.281 1.281 27 H -0.291 1.291 28 C 0.063 3.937 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.388 0.612 44 H 0.257 0.743 45 H 0.079 0.921 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 11.138 -5.673 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 N -0.287 5.287 4 C -0.069 4.069 5 N -0.299 5.299 6 C -0.045 4.045 7 C -0.054 4.054 8 S 0.432 5.568 9 C -0.479 4.479 10 C 0.406 3.594 11 O -0.429 6.429 12 N -0.345 5.345 13 C -0.005 4.005 14 C -0.134 4.134 15 H 0.102 0.898 16 C -0.190 4.190 17 C 0.070 3.930 18 H 0.088 0.912 19 N -0.349 5.349 20 C -0.380 4.380 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.206 1.206 27 H -0.217 1.217 28 C -0.065 4.065 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.222 0.778 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.994 11.298 -5.752 14.988 hybrid contribution 0.359 0.445 0.086 0.578 sum -7.636 11.743 -5.666 15.110 Atomic orbital electron populations 1.20603 0.86476 1.03975 1.03365 1.20418 0.97554 0.84477 0.91809 1.66046 1.02528 1.31958 1.28120 1.24299 0.91340 0.94842 0.96407 1.45683 1.03934 1.03432 1.76868 1.21671 1.00884 0.80053 1.01859 1.21920 0.77829 1.02867 1.02779 1.84786 1.05614 0.94802 1.71569 1.24991 0.94989 0.98274 1.29612 1.16183 0.85074 0.81935 0.76165 1.90735 1.14042 1.85052 1.53112 1.48280 1.07562 1.06030 1.72603 1.22275 0.97995 0.79451 1.00768 1.22682 0.94417 0.95340 1.00964 0.89757 1.21600 1.02196 0.94516 1.00722 1.21200 0.87013 0.89215 0.95600 0.91246 1.42379 1.00593 1.82775 1.09174 1.19237 0.83555 1.40780 0.94425 0.90949 1.24749 0.97914 1.01983 0.95607 1.69662 1.29304 1.54343 1.04170 0.86230 0.84485 0.77913 0.77765 1.21571 1.20633 1.21727 1.23459 0.78111 1.03284 1.01668 0.90382 0.91253 0.88279 0.92831 0.91190 0.90216 0.90278 0.90997 0.90928 0.90721 0.91559 0.91278 0.93092 0.92815 0.77794 0.93309 0.90338 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.70 36.01 0.35 -0.82 16 2 C 0.20 3.16 6.83 -83.55 -0.57 2.59 16 3 N -0.56 -8.72 9.71 -10.94 -0.11 -8.83 16 4 C 0.30 4.28 7.72 -87.98 -0.68 3.61 16 5 N -0.58 -6.63 3.36 -192.00 -0.64 -7.28 16 6 C 0.10 0.88 10.59 59.84 0.63 1.52 16 7 C 0.09 0.80 10.70 59.85 0.64 1.44 16 8 S 0.18 2.71 16.77 -107.50 -1.80 0.91 16 9 C -0.35 -5.96 6.41 -36.93 -0.24 -6.20 16 10 C 0.62 11.12 7.80 -13.06 -0.10 11.02 16 11 O -0.55 -10.58 14.56 5.14 0.07 -10.50 16 12 N -0.61 -10.45 3.33 -172.09 -0.57 -11.03 16 13 C 0.12 1.79 6.39 -2.41 -0.02 1.77 16 14 C -0.11 -1.78 3.27 -88.36 -0.29 -2.07 16 15 H 0.08 1.40 8.00 -51.93 -0.42 0.99 16 16 C -0.13 -1.82 9.32 37.16 0.35 -1.48 16 17 C 0.18 3.34 3.06 -66.10 -0.20 3.14 16 18 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 19 N -0.71 -16.15 5.16 -51.65 -0.27 -16.42 16 20 C -0.25 -6.30 9.97 -15.06 -0.15 -6.45 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 23 N -0.93 -26.26 13.06 55.49 0.72 -25.54 16 24 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.06 1.10 4.94 -3.07 -0.02 1.09 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.10 1.46 6.04 -51.93 -0.31 1.14 16 32 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.08 0.79 7.59 -51.93 -0.39 0.39 16 35 H 0.08 0.81 6.31 -51.93 -0.33 0.48 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 39 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 43 H 0.39 9.53 7.73 -40.82 -0.32 9.21 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.08 1.51 6.75 -51.93 -0.35 1.16 16 46 H 0.06 1.07 7.01 -51.93 -0.36 0.71 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -30.81 381.77 -9.32 -40.13 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.07 Total: 8.04 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.39 Total: 8.91 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -0.87 Total: -69.09 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.80 Total: 0.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.81 -9.32 -40.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939267507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.986 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds