Wall clock time and date at job start Tue Mar 31 2020 21:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30879 * 122.98807 * 2 1 4 4 C 1.30224 * 117.26269 * 180.33239 * 3 2 1 5 5 N 1.37851 * 124.74784 * 179.67012 * 4 3 2 6 6 C 1.46495 * 119.99789 * 0.03967 * 5 4 3 7 7 C 1.46499 * 119.99867 * 180.02562 * 5 4 3 8 8 S 1.70919 * 110.50739 * 359.70517 * 4 3 2 9 9 C 1.36708 * 122.98154 * 179.79193 * 2 1 3 10 10 C 1.46218 * 126.11256 * 359.97438 * 9 2 1 11 11 O 1.21757 * 119.99965 * 359.72182 * 10 9 2 12 12 N 1.34776 * 120.00072 * 179.72039 * 10 9 2 13 13 C 1.47431 * 125.64871 * 180.02562 * 12 10 9 14 14 C 1.55115 * 104.94146 * 203.96579 * 13 12 10 15 15 H 1.08998 * 110.93900 * 81.21673 * 14 13 12 16 16 C 1.53002 * 111.16368 * 205.13005 * 14 13 12 17 17 C 1.55164 * 101.48797 * 323.22183 * 14 13 12 18 18 H 1.09002 * 110.71528 * 276.83147 * 17 14 13 19 19 N 1.46496 * 110.71857 * 153.73591 * 17 14 13 20 20 C 1.36945 * 119.99718 * 157.44207 * 19 17 14 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 17 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47023 * 125.64976 * 359.97266 * 12 10 9 29 29 H 1.08992 * 109.47288 * 270.21322 * 1 2 3 30 30 H 1.09013 * 109.46792 * 30.21135 * 1 2 3 31 31 H 1.08999 * 109.47275 * 150.20297 * 1 2 3 32 32 H 1.09013 * 109.47152 * 89.99980 * 6 5 4 33 33 H 1.09002 * 109.47632 * 209.99917 * 6 5 4 34 34 H 1.09000 * 109.47244 * 330.00073 * 6 5 4 35 35 H 1.08995 * 109.47379 * 0.02562 * 7 5 4 36 36 H 1.09008 * 109.46625 * 120.00036 * 7 5 4 37 37 H 1.09004 * 109.47081 * 239.99834 * 7 5 4 38 38 H 1.09002 * 110.36661 * 322.93236 * 13 12 10 39 39 H 1.09001 * 110.36207 * 85.14277 * 13 12 10 40 40 H 1.08994 * 109.47333 * 172.16849 * 16 14 13 41 41 H 1.09002 * 109.47258 * 292.17185 * 16 14 13 42 42 H 1.09005 * 109.46914 * 52.17022 * 16 14 13 43 43 H 0.96996 * 120.00499 * 337.43937 * 19 17 14 44 44 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.88031 * 59.55721 * 28 12 10 46 46 H 1.09004 * 110.01157 * 298.47021 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2196 1.0978 0.0000 4 6 3.5153 0.9679 -0.0067 5 7 4.4101 2.0165 -0.0143 6 6 3.9204 3.3972 -0.0143 7 6 5.8506 1.7502 -0.0220 8 16 3.9514 -0.6847 -0.0058 9 6 2.2512 -1.1468 0.0042 10 6 1.7295 -2.5127 0.0097 11 8 0.5272 -2.7051 0.0160 12 7 2.5793 -3.5587 0.0077 13 6 2.1913 -4.9810 0.0121 14 6 3.4101 -5.7262 0.6167 15 1 3.4010 -5.6688 1.7051 16 6 3.4563 -7.1816 0.1469 17 6 4.5929 -4.9135 0.0267 18 1 4.8306 -5.2548 -0.9809 19 7 5.7695 -5.0065 0.8944 20 6 7.0185 -4.7786 0.3812 21 1 7.1361 -4.5307 -0.6634 22 6 8.1333 -4.8662 1.2035 23 7 7.9901 -5.1688 2.4764 24 14 9.8371 -4.5560 0.5032 25 1 10.4094 -5.8340 0.0089 26 1 9.7422 -3.5890 -0.6198 27 1 10.7142 -3.9983 1.5638 28 6 4.0469 -3.4704 -0.0003 29 1 -0.3633 0.0038 1.0276 30 1 -0.3633 0.8882 -0.5172 31 1 -0.3634 -0.8918 -0.5107 32 1 3.8050 3.7419 1.0135 33 1 4.6346 4.0362 -0.5337 34 1 2.9571 3.4411 -0.5225 35 1 6.0211 0.6737 -0.0210 36 1 6.2961 2.1875 -0.9157 37 1 6.3065 2.1915 0.8644 38 1 1.3077 -5.1313 0.6324 39 1 2.0034 -5.3261 -1.0046 40 1 4.3909 -7.6387 0.4718 41 1 2.6162 -7.7284 0.5751 42 1 3.3947 -7.2144 -0.9409 43 1 5.6640 -5.2295 1.8325 44 1 8.7692 -5.2304 3.0509 45 1 4.3904 -2.9276 0.8803 46 1 4.3851 -2.9628 -0.9037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939267507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:25 Heat of formation + Delta-G solvation = 16.090907 kcal Electronic energy + Delta-G solvation = -27654.368815 eV Core-core repulsion = 23898.628316 eV Total energy + Delta-G solvation = -3755.740498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37504 -40.69721 -38.89028 -37.76079 -35.84585 -34.00022 -32.59690 -32.20318 -29.67844 -29.36424 -29.11944 -27.42123 -26.97254 -25.85073 -23.38342 -23.07011 -22.04704 -21.37770 -19.62719 -19.36359 -19.05722 -17.81114 -17.63613 -17.14119 -16.79483 -16.45232 -16.18411 -15.78173 -15.45464 -15.31833 -15.04197 -14.72827 -14.65184 -14.45407 -14.07677 -13.85374 -13.69138 -13.52177 -13.48431 -13.41825 -13.22727 -13.04222 -12.93855 -12.85896 -12.80186 -12.27643 -12.12163 -12.12041 -12.00601 -11.68775 -11.44101 -11.19727 -10.98813 -10.88319 -10.56052 -10.28421 -9.73477 -9.05023 -8.59351 -7.91144 -5.21494 -0.52324 0.05187 0.66543 1.48089 1.52185 1.53402 1.61184 1.71880 1.97052 2.18426 2.59343 3.34342 3.39045 3.43890 3.80464 3.85486 3.91193 4.03111 4.13153 4.22747 4.29528 4.31353 4.39840 4.45239 4.59212 4.63541 4.67938 4.70074 4.72663 4.73919 4.83957 4.85538 4.88261 4.90758 5.08910 5.12329 5.22533 5.30848 5.33494 5.50391 5.57984 5.60969 5.83059 6.28371 6.41670 6.76178 7.05929 7.36810 8.06414 8.31860 9.31631 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009271 B = 0.004536 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.383237 B = 6171.153397 C = 8911.169307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.200 3.800 3 N -0.574 5.574 4 C 0.302 3.698 5 N -0.574 5.574 6 C 0.095 3.905 7 C 0.080 3.920 8 S 0.167 5.833 9 C -0.387 4.387 10 C 0.613 3.387 11 O -0.567 6.567 12 N -0.615 5.615 13 C 0.120 3.880 14 C -0.104 4.104 15 H 0.071 0.929 16 C -0.126 4.126 17 C 0.178 3.822 18 H 0.075 0.925 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.081 0.919 22 C -0.065 4.065 23 N -0.966 5.966 24 Si 0.965 3.035 25 H -0.290 1.290 26 H -0.265 1.265 27 H -0.299 1.299 28 C 0.078 3.922 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.376 0.624 44 H 0.250 0.750 45 H 0.060 0.940 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 12.569 -7.077 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.059 3.941 3 N -0.301 5.301 4 C -0.065 4.065 5 N -0.290 5.290 6 C -0.049 4.049 7 C -0.061 4.061 8 S 0.420 5.580 9 C -0.512 4.512 10 C 0.404 3.596 11 O -0.450 6.450 12 N -0.347 5.347 13 C -0.002 4.002 14 C -0.124 4.124 15 H 0.089 0.911 16 C -0.184 4.184 17 C 0.067 3.933 18 H 0.093 0.907 19 N -0.358 5.358 20 C -0.372 4.372 21 H 0.099 0.901 22 C -0.258 4.258 23 N -0.617 5.617 24 Si 0.794 3.206 25 H -0.218 1.218 26 H -0.189 1.189 27 H -0.226 1.226 28 C -0.050 4.050 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.896 12.760 -7.204 16.645 hybrid contribution 0.303 0.164 0.495 0.603 sum -7.593 12.924 -6.709 16.423 Atomic orbital electron populations 1.20599 0.85254 1.04267 1.03815 1.20803 0.98543 0.84439 0.90328 1.66125 1.02887 1.31574 1.29536 1.24526 0.91521 0.95208 0.95258 1.46165 1.04554 1.03732 1.74596 1.21886 1.01400 0.78896 1.02670 1.22185 0.76504 1.02355 1.05088 1.84680 1.04949 0.95774 1.72584 1.24946 0.95938 0.98035 1.32325 1.16359 0.84918 0.82491 0.75812 1.90710 1.14629 1.85474 1.54209 1.48307 1.07120 1.06722 1.72546 1.22369 0.97624 0.78382 1.01831 1.22593 0.93280 0.96390 1.00116 0.91070 1.21553 1.02097 0.92955 1.01761 1.21373 0.86556 0.90153 0.95232 0.90710 1.42476 1.01293 1.82906 1.09078 1.19606 0.84492 1.38445 0.94631 0.90111 1.25459 1.01269 1.03125 0.95935 1.69815 1.29630 1.56753 1.05453 0.85270 0.80346 0.77754 0.77181 1.21783 1.18948 1.22632 1.23099 0.78577 1.02262 1.01052 0.89743 0.89404 0.89391 0.92158 0.87830 0.91283 0.91817 0.88244 0.88996 0.90356 0.89736 0.93243 0.90850 0.91319 0.79186 0.94091 0.92160 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.16 9.70 71.24 0.69 -1.47 16 2 C 0.20 6.33 6.83 42.34 0.29 6.62 16 3 N -0.57 -17.36 9.71 -188.52 -1.83 -19.19 16 4 C 0.30 8.39 7.72 179.42 1.38 9.78 16 5 N -0.57 -11.85 3.36 -761.36 -2.56 -14.41 16 6 C 0.10 1.42 10.59 127.77 1.35 2.77 16 7 C 0.08 1.24 10.70 127.77 1.37 2.61 16 8 S 0.17 5.06 16.77 -56.49 -0.95 4.11 16 9 C -0.39 -13.11 6.41 23.99 0.15 -12.96 16 10 C 0.61 22.17 7.80 86.32 0.67 22.85 16 11 O -0.57 -21.91 14.56 -4.53 -0.07 -21.98 16 12 N -0.61 -20.84 3.33 -816.55 -2.72 -23.56 16 13 C 0.12 3.51 6.39 86.93 0.56 4.07 16 14 C -0.10 -3.18 3.27 -9.33 -0.03 -3.22 16 15 H 0.07 2.38 8.00 -2.39 -0.02 2.37 16 16 C -0.13 -3.28 9.32 71.98 0.67 -2.61 16 17 C 0.18 6.45 3.06 46.18 0.14 6.60 16 18 H 0.07 2.65 8.00 -2.39 -0.02 2.63 16 19 N -0.72 -33.05 5.16 -317.33 -1.64 -34.69 16 20 C -0.24 -12.12 9.97 84.03 0.84 -11.28 16 21 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 22 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 23 N -0.97 -55.87 13.06 21.65 0.28 -55.58 16 24 Si 0.97 42.93 29.55 68.60 2.03 44.96 16 25 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 28 C 0.08 2.73 4.94 86.73 0.43 3.16 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.09 2.58 6.04 -2.39 -0.01 2.56 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 34 H 0.07 1.22 7.59 -2.39 -0.02 1.20 16 35 H 0.06 1.22 6.31 -2.39 -0.02 1.20 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 39 H 0.08 2.19 7.99 -2.39 -0.02 2.17 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.58 8.08 -2.38 -0.02 1.56 16 43 H 0.38 18.96 7.73 -92.71 -0.72 18.24 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.06 2.37 6.75 -2.39 -0.02 2.35 16 46 H 0.07 2.28 7.01 -2.39 -0.02 2.26 16 Total: -1.00 -66.61 381.77 1.81 -64.80 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.28 Total: 31.63 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 8.98 Total: 23.91 kcal Atomic # 7 Polarization: -138.97 SS G_CDS: -8.46 Total: -147.43 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.07 Total: -21.98 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -0.95 Total: 4.11 kcal Total: -66.61 1.81 -64.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939267507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.887 kcal (2) G-P(sol) polarization free energy of solvation -66.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds