Wall clock time and date at job start Tue Mar 31 2020 21:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30879 * 122.98588 * 2 1 4 4 C 1.30234 * 117.26538 * 180.02562 * 3 2 1 5 5 N 1.37845 * 124.74662 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.46502 * 119.99793 * 180.02562 * 5 4 3 8 8 S 1.70918 * 110.50302 * 359.75002 * 4 3 2 9 9 C 1.36707 * 122.98912 * 180.02562 * 2 1 3 10 10 C 1.46225 * 126.10685 * 359.94769 * 9 2 1 11 11 O 1.21750 * 120.00179 * 353.47282 * 10 9 2 12 12 N 1.34778 * 119.99999 * 173.46435 * 10 9 2 13 13 C 1.47421 * 125.64950 * 354.46542 * 12 10 9 14 14 C 1.54910 * 104.83239 * 204.14448 * 13 12 10 15 15 H 1.09002 * 111.03474 * 81.07794 * 14 13 12 16 16 N 1.46496 * 111.00301 * 204.91321 * 14 13 12 17 17 C 1.36942 * 120.00175 * 266.91956 * 16 14 13 18 18 H 1.08002 * 119.99567 * 0.27404 * 17 16 14 19 19 C 1.38809 * 119.99864 * 180.27908 * 17 16 14 20 20 N 1.31624 * 119.99438 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00467 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47166 * 90.00116 * 21 19 17 23 23 H 1.48494 * 109.47276 * 210.00510 * 21 19 17 24 24 H 1.48504 * 109.46870 * 330.00193 * 21 19 17 25 25 C 1.55155 * 101.58125 * 322.98838 * 14 13 12 26 26 C 1.47019 * 125.64506 * 174.48181 * 12 10 9 27 27 H 1.09002 * 109.88900 * 298.33562 * 26 12 10 28 28 C 1.53000 * 109.88633 * 59.50958 * 26 12 10 29 29 H 1.09002 * 109.46506 * 269.96699 * 1 2 3 30 30 H 1.09000 * 109.47662 * 29.96582 * 1 2 3 31 31 H 1.08998 * 109.47338 * 149.97302 * 1 2 3 32 32 H 1.08994 * 109.47097 * 0.02562 * 6 5 4 33 33 H 1.08999 * 109.46610 * 120.00840 * 6 5 4 34 34 H 1.09004 * 109.46971 * 240.00248 * 6 5 4 35 35 H 1.08994 * 109.47006 * 89.99329 * 7 5 4 36 36 H 1.09001 * 109.46679 * 209.99413 * 7 5 4 37 37 H 1.08996 * 109.46661 * 329.99258 * 7 5 4 38 38 H 1.08997 * 110.36699 * 85.30158 * 13 12 10 39 39 H 1.08998 * 110.36357 * 322.98510 * 13 12 10 40 40 H 0.97000 * 120.00273 * 87.20276 * 16 14 13 41 41 H 0.96998 * 119.99582 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.72033 * 153.86332 * 25 14 13 43 43 H 1.09000 * 110.72205 * 276.96354 * 25 14 13 44 44 H 1.08999 * 109.47126 * 177.80702 * 28 26 12 45 45 H 1.09005 * 109.46651 * 297.80700 * 28 26 12 46 46 H 1.08995 * 109.46970 * 57.80173 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2195 1.0978 0.0000 4 6 3.5154 0.9680 -0.0005 5 7 4.4100 2.0167 -0.0001 6 6 3.9201 3.3974 0.0016 7 6 5.8506 1.7505 -0.0013 8 16 3.9515 -0.6846 0.0059 9 6 2.2513 -1.1467 -0.0005 10 6 1.7296 -2.5127 0.0000 11 8 0.5339 -2.7076 0.1207 12 7 2.5723 -3.5560 -0.1335 13 6 4.0189 -3.4631 -0.4019 14 6 4.3868 -4.8142 -1.0644 15 1 4.1364 -4.8108 -2.1253 16 7 5.8033 -5.1291 -0.8632 17 6 6.7266 -4.7647 -1.8067 18 1 6.4109 -4.2411 -2.6970 19 6 8.0679 -5.0682 -1.6187 20 7 8.9553 -4.7175 -2.5253 21 14 8.6139 -5.9732 -0.0785 22 1 8.5732 -7.4372 -0.3239 23 1 9.9996 -5.5679 0.2689 24 1 7.7028 -5.6339 1.0441 25 6 3.4810 -5.8015 -0.2823 26 6 2.2011 -4.9752 -0.0358 27 1 1.8082 -5.1881 0.9585 28 6 1.1514 -5.3128 -1.0965 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 2.8302 3.3962 0.0028 33 1 4.2837 3.9107 0.8918 34 1 4.2823 3.9125 -0.8882 35 1 6.2072 1.6854 -1.0292 36 1 6.3699 2.5592 0.5129 37 1 6.0465 0.8089 0.5116 38 1 4.5701 -3.3347 0.5296 39 1 4.2260 -2.6377 -1.0830 40 1 6.0868 -5.5994 -0.0636 41 1 9.8927 -4.9292 -2.3938 42 1 3.2609 -6.6829 -0.8847 43 1 3.9464 -6.0873 0.6611 44 1 0.9099 -6.3743 -1.0437 45 1 0.2509 -4.7257 -0.9162 46 1 1.5458 -5.0786 -2.0853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989527346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:23 Heat of formation + Delta-G solvation = 42.087116 kcal Electronic energy + Delta-G solvation = -27782.613012 eV Core-core repulsion = 24027.999794 eV Total energy + Delta-G solvation = -3754.613218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.23589 -39.59235 -37.54162 -36.71453 -34.35704 -32.05300 -31.58013 -31.02977 -28.89941 -28.62247 -27.85302 -26.44257 -25.59406 -23.79103 -22.49633 -22.12140 -20.76008 -19.85773 -18.42124 -18.23967 -17.73693 -16.57452 -16.37875 -16.01340 -15.58872 -15.24345 -14.76398 -14.58085 -14.20919 -13.77770 -13.72576 -13.62624 -13.30489 -12.96691 -12.90555 -12.84008 -12.78434 -12.64168 -12.42106 -12.36457 -12.29585 -11.97340 -11.79525 -11.59324 -11.18845 -11.06883 -10.90666 -10.68554 -10.40658 -10.13955 -9.98318 -9.81598 -9.70383 -9.38017 -9.15861 -9.03055 -8.45439 -7.57548 -7.45378 -5.89911 -3.28206 0.62996 1.14389 1.80244 2.63498 2.66670 3.19119 3.28335 3.31517 3.37734 3.44301 4.34065 4.47122 4.65619 4.82303 4.99721 5.00097 5.03754 5.13150 5.15612 5.27227 5.28329 5.30467 5.41410 5.47569 5.53205 5.54621 5.72899 5.74702 5.75935 5.78063 5.86123 5.94294 5.99036 6.07193 6.19137 6.28300 6.33817 6.45355 6.48148 6.59646 6.71372 6.79484 7.72317 7.84386 7.89290 8.28384 8.38570 9.04926 9.76958 9.94960 11.27553 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.004472 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.077056 B = 6260.138575 C = 8720.135250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.200 3.800 3 N -0.563 5.563 4 C 0.300 3.700 5 N -0.579 5.579 6 C 0.094 3.906 7 C 0.086 3.914 8 S 0.177 5.823 9 C -0.355 4.355 10 C 0.619 3.381 11 O -0.543 6.543 12 N -0.611 5.611 13 C 0.065 3.935 14 C 0.185 3.815 15 H 0.079 0.921 16 N -0.734 5.734 17 C -0.254 4.254 18 H 0.093 0.907 19 C 0.012 3.988 20 N -0.928 5.928 21 Si 0.882 3.118 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.142 4.142 26 C 0.144 3.856 27 H 0.071 0.929 28 C -0.162 4.162 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.365 0.635 41 H 0.261 0.739 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 10.882 6.571 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 N -0.289 5.289 4 C -0.066 4.066 5 N -0.297 5.297 6 C -0.051 4.051 7 C -0.057 4.057 8 S 0.431 5.569 9 C -0.481 4.481 10 C 0.409 3.591 11 O -0.424 6.424 12 N -0.344 5.344 13 C -0.063 4.063 14 C 0.072 3.928 15 H 0.097 0.903 16 N -0.375 5.375 17 C -0.384 4.384 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.574 5.574 21 Si 0.712 3.288 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.181 4.181 26 C 0.040 3.960 27 H 0.089 0.911 28 C -0.220 4.220 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.842 11.094 6.433 16.794 hybrid contribution 0.014 -0.341 1.103 1.154 sum -10.828 10.754 7.536 17.020 Atomic orbital electron populations 1.20561 0.86443 1.03827 1.03328 1.20404 0.97534 0.84486 0.91628 1.66027 1.02485 1.31946 1.28402 1.24245 0.91301 0.94795 0.96262 1.45705 1.04009 1.03416 1.76544 1.21764 1.02186 0.80059 1.01059 1.21925 0.77742 1.02948 1.03080 1.84744 1.05696 0.95063 1.71434 1.24973 0.94870 0.98298 1.29998 1.16150 0.84967 0.81802 0.76155 1.90727 1.14318 1.84853 1.52488 1.48353 1.09544 1.05711 1.70798 1.23561 0.79055 1.02671 1.01017 1.21198 0.84479 0.89421 0.97676 0.90339 1.42683 1.01790 1.69225 1.23834 1.19081 0.87215 1.32033 1.00029 0.88943 1.24663 0.95722 1.00409 0.97669 1.69700 1.01672 1.51267 1.34802 0.86605 0.78060 0.80270 0.83901 1.20883 1.21617 1.20214 1.23085 0.94734 0.98724 1.01553 1.21459 0.95515 0.79797 0.99207 0.91076 1.22159 0.99642 1.01374 0.98805 0.90329 0.91225 0.88553 0.89106 0.92301 0.92232 0.91406 0.89762 0.90745 0.91119 0.90414 0.80184 0.92876 0.89677 0.90770 0.92025 0.91020 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.63 36.00 0.35 -0.73 16 2 C 0.20 3.07 6.83 -83.55 -0.57 2.50 16 3 N -0.56 -8.45 9.43 -10.94 -0.10 -8.55 16 4 C 0.30 4.19 7.72 -87.97 -0.68 3.51 16 5 N -0.58 -6.43 3.36 -192.01 -0.64 -7.08 16 6 C 0.09 0.81 10.75 59.85 0.64 1.45 16 7 C 0.09 0.75 10.44 59.85 0.62 1.38 16 8 S 0.18 2.58 17.32 -107.50 -1.86 0.72 16 9 C -0.36 -5.74 6.36 -36.93 -0.23 -5.97 16 10 C 0.62 10.54 7.59 -13.05 -0.10 10.44 16 11 O -0.54 -9.81 13.12 5.14 0.07 -9.75 16 12 N -0.61 -9.84 3.08 -164.71 -0.51 -10.35 16 13 C 0.06 1.09 4.99 -2.53 -0.01 1.07 16 14 C 0.18 3.28 3.71 -65.78 -0.24 3.04 16 15 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 16 N -0.73 -15.82 5.05 -51.35 -0.26 -16.08 16 17 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 18 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 19 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 20 N -0.93 -27.52 13.97 55.49 0.78 -26.74 16 21 Si 0.88 20.67 27.73 -169.99 -4.71 15.96 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 25 C -0.14 -2.06 6.14 -24.89 -0.15 -2.21 16 26 C 0.14 2.07 3.53 -66.95 -0.24 1.83 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 C -0.16 -2.17 9.04 37.16 0.34 -1.83 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.35 6.21 -51.93 -0.32 1.03 16 32 H 0.09 0.90 7.09 -51.93 -0.37 0.53 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 37 H 0.07 0.70 7.00 -51.93 -0.36 0.34 16 38 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 39 H 0.08 1.36 5.82 -41.06 -0.24 1.12 16 40 H 0.36 7.71 5.62 -40.82 -0.23 7.48 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 43 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.06 6.61 -51.93 -0.34 0.71 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -31.66 376.27 -9.02 -40.69 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.91 Total: 7.57 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -0.53 Total: 7.94 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.74 Total: -68.80 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.71 Total: 15.96 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.86 Total: 0.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.66 -9.02 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989527346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.776 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds