Wall clock time and date at job start Tue Mar 31 2020 21:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30879 * 122.98588 * 2 1 4 4 C 1.30234 * 117.26538 * 180.02562 * 3 2 1 5 5 N 1.37845 * 124.74662 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.46502 * 119.99793 * 180.02562 * 5 4 3 8 8 S 1.70918 * 110.50302 * 359.75002 * 4 3 2 9 9 C 1.36707 * 122.98912 * 180.02562 * 2 1 3 10 10 C 1.46225 * 126.10685 * 359.94769 * 9 2 1 11 11 O 1.21750 * 120.00179 * 353.47282 * 10 9 2 12 12 N 1.34778 * 119.99999 * 173.46435 * 10 9 2 13 13 C 1.47421 * 125.64950 * 354.46542 * 12 10 9 14 14 C 1.54910 * 104.83239 * 204.14448 * 13 12 10 15 15 H 1.09002 * 111.03474 * 81.07794 * 14 13 12 16 16 N 1.46496 * 111.00301 * 204.91321 * 14 13 12 17 17 C 1.36942 * 120.00175 * 266.91956 * 16 14 13 18 18 H 1.08002 * 119.99567 * 0.27404 * 17 16 14 19 19 C 1.38809 * 119.99864 * 180.27908 * 17 16 14 20 20 N 1.31624 * 119.99438 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00467 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47166 * 90.00116 * 21 19 17 23 23 H 1.48494 * 109.47276 * 210.00510 * 21 19 17 24 24 H 1.48504 * 109.46870 * 330.00193 * 21 19 17 25 25 C 1.55155 * 101.58125 * 322.98838 * 14 13 12 26 26 C 1.47019 * 125.64506 * 174.48181 * 12 10 9 27 27 H 1.09002 * 109.88900 * 298.33562 * 26 12 10 28 28 C 1.53000 * 109.88633 * 59.50958 * 26 12 10 29 29 H 1.09002 * 109.46506 * 269.96699 * 1 2 3 30 30 H 1.09000 * 109.47662 * 29.96582 * 1 2 3 31 31 H 1.08998 * 109.47338 * 149.97302 * 1 2 3 32 32 H 1.08994 * 109.47097 * 0.02562 * 6 5 4 33 33 H 1.08999 * 109.46610 * 120.00840 * 6 5 4 34 34 H 1.09004 * 109.46971 * 240.00248 * 6 5 4 35 35 H 1.08994 * 109.47006 * 89.99329 * 7 5 4 36 36 H 1.09001 * 109.46679 * 209.99413 * 7 5 4 37 37 H 1.08996 * 109.46661 * 329.99258 * 7 5 4 38 38 H 1.08997 * 110.36699 * 85.30158 * 13 12 10 39 39 H 1.08998 * 110.36357 * 322.98510 * 13 12 10 40 40 H 0.97000 * 120.00273 * 87.20276 * 16 14 13 41 41 H 0.96998 * 119.99582 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.72033 * 153.86332 * 25 14 13 43 43 H 1.09000 * 110.72205 * 276.96354 * 25 14 13 44 44 H 1.08999 * 109.47126 * 177.80702 * 28 26 12 45 45 H 1.09005 * 109.46651 * 297.80700 * 28 26 12 46 46 H 1.08995 * 109.46970 * 57.80173 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2195 1.0978 0.0000 4 6 3.5154 0.9680 -0.0005 5 7 4.4100 2.0167 -0.0001 6 6 3.9201 3.3974 0.0016 7 6 5.8506 1.7505 -0.0013 8 16 3.9515 -0.6846 0.0059 9 6 2.2513 -1.1467 -0.0005 10 6 1.7296 -2.5127 0.0000 11 8 0.5339 -2.7076 0.1207 12 7 2.5723 -3.5560 -0.1335 13 6 4.0189 -3.4631 -0.4019 14 6 4.3868 -4.8142 -1.0644 15 1 4.1364 -4.8108 -2.1253 16 7 5.8033 -5.1291 -0.8632 17 6 6.7266 -4.7647 -1.8067 18 1 6.4109 -4.2411 -2.6970 19 6 8.0679 -5.0682 -1.6187 20 7 8.9553 -4.7175 -2.5253 21 14 8.6139 -5.9732 -0.0785 22 1 8.5732 -7.4372 -0.3239 23 1 9.9996 -5.5679 0.2689 24 1 7.7028 -5.6339 1.0441 25 6 3.4810 -5.8015 -0.2823 26 6 2.2011 -4.9752 -0.0358 27 1 1.8082 -5.1881 0.9585 28 6 1.1514 -5.3128 -1.0965 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 2.8302 3.3962 0.0028 33 1 4.2837 3.9107 0.8918 34 1 4.2823 3.9125 -0.8882 35 1 6.2072 1.6854 -1.0292 36 1 6.3699 2.5592 0.5129 37 1 6.0465 0.8089 0.5116 38 1 4.5701 -3.3347 0.5296 39 1 4.2260 -2.6377 -1.0830 40 1 6.0868 -5.5994 -0.0636 41 1 9.8927 -4.9292 -2.3938 42 1 3.2609 -6.6829 -0.8847 43 1 3.9464 -6.0873 0.6611 44 1 0.9099 -6.3743 -1.0437 45 1 0.2509 -4.7257 -0.9162 46 1 1.5458 -5.0786 -2.0853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989527346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:22 Heat of formation + Delta-G solvation = 22.213543 kcal Electronic energy + Delta-G solvation = -27783.474795 eV Core-core repulsion = 24027.999794 eV Total energy + Delta-G solvation = -3755.475001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45038 -40.75880 -38.79901 -37.74534 -36.07984 -33.54259 -33.16978 -32.12109 -30.45190 -29.36399 -29.00520 -27.37980 -26.80915 -25.55842 -23.82096 -23.10339 -22.22251 -21.10670 -19.78098 -19.56156 -19.22282 -17.78612 -17.53079 -17.20337 -16.77696 -16.40881 -16.22592 -15.67275 -15.57567 -15.29592 -14.91133 -14.78376 -14.65114 -14.54687 -14.13917 -14.01701 -13.75076 -13.51543 -13.47175 -13.37003 -13.33848 -13.18226 -13.02151 -12.98401 -12.82786 -12.40664 -12.17903 -12.07515 -11.94047 -11.81391 -11.49666 -11.19596 -11.00289 -10.85988 -10.56233 -10.23004 -9.75708 -9.34363 -8.60546 -7.99463 -5.35712 -0.51391 0.04820 0.66696 1.43387 1.45843 1.49414 1.52749 1.71937 1.94678 2.20342 2.51481 3.28933 3.31472 3.37286 3.71728 3.80922 3.92966 4.05326 4.08767 4.14405 4.26278 4.32683 4.37501 4.40103 4.46392 4.63196 4.66738 4.67823 4.72389 4.73710 4.75599 4.85300 4.87039 4.92616 5.02391 5.12498 5.20376 5.27677 5.35180 5.49789 5.61362 5.79359 5.83364 6.23086 6.43996 6.76245 7.07374 7.11114 7.80615 8.01303 9.21237 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.004472 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.077056 B = 6260.138575 C = 8720.135250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.200 3.800 3 N -0.576 5.576 4 C 0.303 3.697 5 N -0.573 5.573 6 C 0.089 3.911 7 C 0.078 3.922 8 S 0.165 5.835 9 C -0.386 4.386 10 C 0.616 3.384 11 O -0.559 6.559 12 N -0.612 5.612 13 C 0.077 3.923 14 C 0.177 3.823 15 H 0.066 0.934 16 N -0.734 5.734 17 C -0.235 4.235 18 H 0.059 0.941 19 C -0.053 4.053 20 N -0.979 5.979 21 Si 0.949 3.051 22 H -0.279 1.279 23 H -0.299 1.299 24 H -0.248 1.248 25 C -0.128 4.128 26 C 0.140 3.860 27 H 0.082 0.918 28 C -0.155 4.155 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.371 0.629 41 H 0.258 0.742 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 11.140 8.383 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 N -0.303 5.303 4 C -0.064 4.064 5 N -0.289 5.289 6 C -0.055 4.055 7 C -0.064 4.064 8 S 0.418 5.582 9 C -0.512 4.512 10 C 0.407 3.593 11 O -0.441 6.441 12 N -0.345 5.345 13 C -0.050 4.050 14 C 0.066 3.934 15 H 0.084 0.916 16 N -0.377 5.377 17 C -0.365 4.365 18 H 0.077 0.923 19 C -0.245 4.245 20 N -0.629 5.629 21 Si 0.776 3.224 22 H -0.205 1.205 23 H -0.226 1.226 24 H -0.172 1.172 25 C -0.166 4.166 26 C 0.038 3.962 27 H 0.100 0.900 28 C -0.213 4.213 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.205 0.795 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.378 11.373 8.269 18.088 hybrid contribution 0.132 -0.222 0.466 0.533 sum -11.246 11.151 8.735 18.086 Atomic orbital electron populations 1.20554 0.85212 1.03968 1.03891 1.20789 0.98521 0.84460 0.90336 1.66104 1.02813 1.31638 1.29703 1.24475 0.91497 0.95164 0.95295 1.46164 1.04578 1.03744 1.74432 1.21971 1.01519 0.78781 1.03182 1.22164 0.76585 1.03940 1.03704 1.84632 1.05210 0.95976 1.72377 1.24959 0.95642 0.98198 1.32419 1.16290 0.84847 0.82264 0.75891 1.90707 1.14791 1.85206 1.53414 1.48364 1.08973 1.06438 1.70698 1.23238 0.79725 1.01551 1.00519 1.21308 0.83147 0.91158 0.97765 0.91640 1.42569 1.02607 1.69381 1.23099 1.18991 0.88032 1.30022 0.99494 0.92268 1.25413 0.95825 1.02172 1.01092 1.69878 1.01872 1.53749 1.37413 0.85516 0.77399 0.78752 0.80743 1.20519 1.22586 1.17227 1.23025 0.93577 0.98287 1.01745 1.21623 0.95726 0.78758 1.00115 0.90018 1.22099 0.98517 1.02792 0.97850 0.89435 0.89651 0.89703 0.90510 0.89845 0.90332 0.91067 0.86433 0.91595 0.91205 0.91496 0.79508 0.93317 0.87933 0.89519 0.89383 0.92483 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 9.63 71.23 0.69 -1.30 16 2 C 0.20 6.11 6.83 42.34 0.29 6.40 16 3 N -0.58 -16.94 9.43 -188.52 -1.78 -18.72 16 4 C 0.30 8.24 7.72 179.42 1.39 9.62 16 5 N -0.57 -11.74 3.36 -761.38 -2.56 -14.30 16 6 C 0.09 1.32 10.75 127.77 1.37 2.69 16 7 C 0.08 1.22 10.44 127.77 1.33 2.55 16 8 S 0.16 4.83 17.32 -56.49 -0.98 3.85 16 9 C -0.39 -12.54 6.36 23.99 0.15 -12.39 16 10 C 0.62 20.99 7.59 86.32 0.66 21.64 16 11 O -0.56 -20.18 13.12 -4.51 -0.06 -20.24 16 12 N -0.61 -19.38 3.08 -793.20 -2.44 -21.83 16 13 C 0.08 2.58 4.99 86.86 0.43 3.01 16 14 C 0.18 6.15 3.71 46.38 0.17 6.33 16 15 H 0.07 2.45 8.09 -2.39 -0.02 2.44 16 16 N -0.73 -30.90 5.05 -316.38 -1.60 -32.50 16 17 C -0.23 -12.34 10.44 84.03 0.88 -11.47 16 18 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 19 C -0.05 -2.91 5.50 84.86 0.47 -2.45 16 20 N -0.98 -59.54 13.97 21.65 0.30 -59.24 16 21 Si 0.95 42.21 27.73 68.60 1.90 44.11 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.25 -9.75 6.52 99.48 0.65 -9.10 16 25 C -0.13 -3.39 6.14 31.78 0.20 -3.20 16 26 C 0.14 3.80 3.53 45.34 0.16 3.96 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 C -0.15 -3.91 9.04 71.98 0.65 -3.26 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.39 6.21 -2.39 -0.01 2.38 16 32 H 0.08 1.40 7.09 -2.39 -0.02 1.38 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 1.07 8.07 -2.39 -0.02 1.06 16 37 H 0.07 1.18 7.00 -2.39 -0.02 1.16 16 38 H 0.07 2.35 7.96 -2.39 -0.02 2.33 16 39 H 0.07 2.40 5.82 -9.30 -0.05 2.34 16 40 H 0.37 14.78 5.62 -92.71 -0.52 14.25 16 41 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.10 2.40 7.83 -2.39 -0.02 2.38 16 43 H 0.09 2.14 8.00 -2.39 -0.02 2.12 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.06 1.63 6.61 -2.38 -0.02 1.61 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.39 376.27 2.00 -67.39 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.38 Total: 29.33 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 8.83 Total: 22.14 kcal Atomic # 7 Polarization: -138.50 SS G_CDS: -8.07 Total: -146.58 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.06 Total: -20.24 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.90 Total: 44.11 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -0.98 Total: 3.85 kcal Total: -69.39 2.00 -67.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989527346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.603 kcal (2) G-P(sol) polarization free energy of solvation -69.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds