Wall clock time and date at job start Tue Mar 31 2020 21:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30878 * 122.98835 * 2 1 4 4 C 1.30236 * 117.26143 * 180.22557 * 3 2 1 5 5 N 1.37847 * 124.74565 * 179.77174 * 4 3 2 6 6 C 1.46499 * 119.99633 * 359.69136 * 5 4 3 7 7 C 1.46502 * 119.99760 * 179.69933 * 5 4 3 8 8 S 1.70917 * 110.50651 * 359.50096 * 4 3 2 9 9 C 1.36717 * 122.98092 * 179.68444 * 2 1 3 10 10 C 1.46220 * 126.11268 * 0.02562 * 9 2 1 11 11 O 1.21758 * 119.99829 * 42.05999 * 10 9 2 12 12 N 1.34771 * 119.99943 * 222.06437 * 10 9 2 13 13 C 1.46927 * 120.63210 * 5.38481 * 12 10 9 14 14 C 1.53624 * 108.54345 * 126.37076 * 13 12 10 15 15 C 1.53035 * 109.24518 * 54.85405 * 14 13 12 16 16 N 1.46500 * 109.46401 * 178.49307 * 15 14 13 17 17 C 1.36937 * 119.99620 * 275.06885 * 16 15 14 18 18 H 1.07999 * 120.00285 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99869 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00176 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47524 * 89.99900 * 21 19 17 23 23 H 1.48501 * 109.47151 * 210.00149 * 21 19 17 24 24 H 1.48510 * 109.46957 * 329.99860 * 21 19 17 25 25 C 1.53041 * 109.54176 * 298.51447 * 15 14 13 26 26 C 1.46930 * 120.62823 * 185.66291 * 12 10 9 27 27 H 1.08995 * 109.47480 * 270.31761 * 1 2 3 28 28 H 1.09005 * 109.46895 * 30.31419 * 1 2 3 29 29 H 1.09004 * 109.47665 * 150.31335 * 1 2 3 30 30 H 1.09003 * 109.47426 * 270.00239 * 6 5 4 31 31 H 1.09005 * 109.46646 * 150.00491 * 6 5 4 32 32 H 1.09000 * 109.47759 * 30.00709 * 6 5 4 33 33 H 1.08997 * 109.46448 * 179.97438 * 7 5 4 34 34 H 1.08998 * 109.46731 * 299.98957 * 7 5 4 35 35 H 1.08995 * 109.47334 * 59.99537 * 7 5 4 36 36 H 1.09005 * 109.58485 * 246.20166 * 13 12 10 37 37 H 1.08998 * 109.58669 * 6.62909 * 13 12 10 38 38 H 1.09008 * 109.63328 * 294.86498 * 14 13 12 39 39 H 1.08996 * 109.43304 * 174.72429 * 14 13 12 40 40 H 1.09003 * 109.46138 * 58.52990 * 15 14 13 41 41 H 0.96995 * 120.00243 * 95.06470 * 16 15 14 42 42 H 0.96995 * 120.00497 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.49545 * 301.41047 * 25 15 14 44 44 H 1.08997 * 109.50342 * 181.31568 * 25 15 14 45 45 H 1.08999 * 109.58672 * 353.37485 * 26 12 10 46 46 H 1.09007 * 109.58330 * 113.65942 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2195 1.0978 0.0000 4 6 3.5154 0.9678 -0.0046 5 7 4.4101 2.0165 -0.0098 6 6 3.9203 3.3971 -0.0173 7 6 5.8507 1.7501 -0.0080 8 16 3.9514 -0.6848 0.0044 9 6 2.2512 -1.1468 0.0063 10 6 1.7294 -2.5128 0.0133 11 8 0.7811 -2.8058 -0.6919 12 7 2.2981 -3.4473 0.8004 13 6 3.3650 -3.0838 1.7430 14 6 2.9687 -3.5765 3.1431 15 6 2.6669 -5.0756 3.0836 16 7 2.3233 -5.5579 4.4236 17 6 3.3145 -5.9240 5.2945 18 1 4.3496 -5.8569 4.9937 19 6 2.9890 -6.3805 6.5644 20 7 1.7276 -6.4620 6.9311 21 14 4.3412 -6.8793 7.7527 22 1 4.7563 -5.6999 8.5537 23 1 3.8361 -7.9409 8.6600 24 1 5.5064 -7.3939 6.9891 25 6 1.4915 -5.3240 2.1354 26 6 1.8672 -4.8501 0.7279 27 1 -0.3634 0.0057 1.0276 28 1 -0.3633 0.8872 -0.5187 29 1 -0.3634 -0.8928 -0.5090 30 1 3.7992 3.7341 -1.0468 31 1 4.6375 4.0398 0.4934 32 1 2.9599 3.4449 0.4960 33 1 6.3947 2.6946 -0.0132 34 1 6.1143 1.1836 0.8852 35 1 6.1149 1.1741 -0.8948 36 1 4.2989 -3.5556 1.4374 37 1 3.4875 -2.0008 1.7563 38 1 2.0825 -3.0402 3.4828 39 1 3.7906 -3.3981 3.8364 40 1 3.5454 -5.6088 2.7202 41 1 1.3937 -5.6179 4.6939 42 1 1.5001 -6.7806 7.8186 43 1 0.6194 -4.7713 2.4847 44 1 1.2621 -6.3893 2.1115 45 1 1.0011 -4.9328 0.0712 46 1 2.6806 -5.4626 0.3389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997067263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:36 Heat of formation + Delta-G solvation = 35.653227 kcal Electronic energy + Delta-G solvation = -27342.049573 eV Core-core repulsion = 23587.157361 eV Total energy + Delta-G solvation = -3754.892213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.39680 -39.53841 -37.46302 -36.89749 -34.45745 -32.15143 -31.52666 -30.75590 -29.37710 -28.81198 -28.00969 -26.67562 -24.83474 -23.04119 -22.85003 -22.35513 -21.12468 -19.79585 -18.50225 -18.45527 -17.09394 -16.82341 -16.70291 -16.09474 -15.62895 -14.96096 -14.89242 -14.79631 -14.21288 -13.96860 -13.75003 -13.60571 -13.47379 -13.26211 -13.20441 -13.13807 -12.90702 -12.63784 -12.48455 -12.41816 -12.22446 -11.93317 -11.56573 -11.35080 -10.96924 -10.89408 -10.80619 -10.48089 -10.24172 -10.17196 -9.97386 -9.81076 -9.67463 -9.64704 -9.21180 -8.88137 -8.47329 -7.80782 -6.97746 -5.77800 -3.06967 0.48971 0.85129 1.48658 2.42257 2.55739 3.02896 3.31459 3.41783 3.46841 3.48831 4.16235 4.56900 4.57147 4.71823 4.76030 4.81384 5.09210 5.10214 5.13612 5.14892 5.35897 5.36081 5.39404 5.45092 5.54122 5.61240 5.62751 5.66752 5.73867 5.78199 5.96237 6.03336 6.15076 6.24189 6.28540 6.39818 6.41910 6.53010 6.58691 6.65959 6.91121 7.05304 7.50852 7.67794 7.71058 8.26040 8.40442 9.51597 10.09460 10.44269 11.44793 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002932 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.912551 B = 9548.411057 C =10681.777731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.193 3.807 3 N -0.552 5.552 4 C 0.313 3.687 5 N -0.581 5.581 6 C 0.099 3.901 7 C 0.085 3.915 8 S 0.150 5.850 9 C -0.343 4.343 10 C 0.606 3.394 11 O -0.539 6.539 12 N -0.601 5.601 13 C 0.100 3.900 14 C -0.147 4.147 15 C 0.179 3.821 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.138 4.138 26 C 0.118 3.882 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 18.056 -17.048 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 N -0.277 5.277 4 C -0.054 4.054 5 N -0.299 5.299 6 C -0.045 4.045 7 C -0.058 4.058 8 S 0.402 5.598 9 C -0.469 4.469 10 C 0.393 3.607 11 O -0.419 6.419 12 N -0.333 5.333 13 C -0.024 4.024 14 C -0.188 4.188 15 C 0.069 3.931 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.177 4.177 26 C -0.004 4.004 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.348 17.970 -17.307 26.009 hybrid contribution -0.236 -0.055 1.017 1.046 sum 7.112 17.915 -16.290 25.237 Atomic orbital electron populations 1.20605 0.86478 1.04561 1.03484 1.20364 0.97567 0.84320 0.92266 1.66009 1.02203 1.31669 1.27864 1.23757 0.90991 0.93312 0.97376 1.45673 1.03868 1.03448 1.76934 1.21758 1.01212 0.79617 1.01935 1.21929 0.77914 1.03420 1.02521 1.83892 1.06526 0.97299 1.72070 1.24878 0.94506 0.98626 1.28906 1.16588 0.82179 0.82420 0.79471 1.90770 1.27833 1.80300 1.42962 1.48024 1.38191 1.08579 1.38525 1.22180 0.89449 1.00533 0.90260 1.22722 1.02152 1.00327 0.93583 1.20168 0.95014 0.91312 0.86618 1.42436 1.06832 1.77236 1.09907 1.19229 0.88502 1.35712 0.93595 0.91183 1.24750 0.96111 1.02317 0.97771 1.69659 1.15393 1.52972 1.20009 0.86212 0.81016 0.77890 0.81196 1.21770 1.21798 1.20754 1.22200 0.99882 1.01694 0.93965 1.21643 1.00680 0.79778 0.98324 0.90227 0.90481 0.88552 0.92737 0.91006 0.90028 0.89024 0.91447 0.91683 0.91414 0.90275 0.92146 0.90684 0.93406 0.78241 0.93496 0.91719 0.90467 0.89149 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 10.09 36.00 0.36 -0.78 16 2 C 0.19 2.72 6.83 -83.55 -0.57 2.15 16 3 N -0.55 -7.39 9.71 -10.94 -0.11 -7.50 16 4 C 0.31 3.60 7.72 -87.97 -0.68 2.92 16 5 N -0.58 -4.88 3.36 -192.00 -0.64 -5.52 16 6 C 0.10 0.65 10.52 59.85 0.63 1.28 16 7 C 0.08 0.43 9.98 59.85 0.60 1.03 16 8 S 0.15 1.69 19.39 -107.50 -2.08 -0.40 16 9 C -0.34 -4.95 5.37 -36.93 -0.20 -5.14 16 10 C 0.61 9.75 7.29 -13.06 -0.10 9.65 16 11 O -0.54 -9.83 14.71 5.14 0.08 -9.75 16 12 N -0.60 -9.10 2.97 -174.20 -0.52 -9.62 16 13 C 0.10 1.42 5.71 -3.49 -0.02 1.40 16 14 C -0.15 -2.55 5.67 -26.39 -0.15 -2.70 16 15 C 0.18 3.45 2.73 -67.89 -0.19 3.27 16 16 N -0.72 -17.82 5.12 -53.39 -0.27 -18.09 16 17 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 26 C 0.12 1.74 6.44 -3.71 -0.02 1.72 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.31 6.25 -51.93 -0.32 0.99 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 32 H 0.08 0.66 7.59 -51.93 -0.39 0.27 16 33 H 0.09 0.23 7.79 -51.93 -0.40 -0.17 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.07 4.59 -39.85 -0.18 0.88 16 38 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -33.53 381.22 -9.84 -43.37 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.01 Total: 6.78 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.72 Total: 5.20 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -0.82 Total: -68.01 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.08 Total: -0.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.53 -9.84 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997067263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.024 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds