Wall clock time and date at job start Tue Mar 31 2020 21:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30878 * 122.98835 * 2 1 4 4 C 1.30236 * 117.26143 * 180.22557 * 3 2 1 5 5 N 1.37847 * 124.74565 * 179.77174 * 4 3 2 6 6 C 1.46499 * 119.99633 * 359.69136 * 5 4 3 7 7 C 1.46502 * 119.99760 * 179.69933 * 5 4 3 8 8 S 1.70917 * 110.50651 * 359.50096 * 4 3 2 9 9 C 1.36717 * 122.98092 * 179.68444 * 2 1 3 10 10 C 1.46220 * 126.11268 * 0.02562 * 9 2 1 11 11 O 1.21758 * 119.99829 * 42.05999 * 10 9 2 12 12 N 1.34771 * 119.99943 * 222.06437 * 10 9 2 13 13 C 1.46927 * 120.63210 * 5.38481 * 12 10 9 14 14 C 1.53624 * 108.54345 * 126.37076 * 13 12 10 15 15 C 1.53035 * 109.24518 * 54.85405 * 14 13 12 16 16 N 1.46500 * 109.46401 * 178.49307 * 15 14 13 17 17 C 1.36937 * 119.99620 * 275.06885 * 16 15 14 18 18 H 1.07999 * 120.00285 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99869 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00176 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47524 * 89.99900 * 21 19 17 23 23 H 1.48501 * 109.47151 * 210.00149 * 21 19 17 24 24 H 1.48510 * 109.46957 * 329.99860 * 21 19 17 25 25 C 1.53041 * 109.54176 * 298.51447 * 15 14 13 26 26 C 1.46930 * 120.62823 * 185.66291 * 12 10 9 27 27 H 1.08995 * 109.47480 * 270.31761 * 1 2 3 28 28 H 1.09005 * 109.46895 * 30.31419 * 1 2 3 29 29 H 1.09004 * 109.47665 * 150.31335 * 1 2 3 30 30 H 1.09003 * 109.47426 * 270.00239 * 6 5 4 31 31 H 1.09005 * 109.46646 * 150.00491 * 6 5 4 32 32 H 1.09000 * 109.47759 * 30.00709 * 6 5 4 33 33 H 1.08997 * 109.46448 * 179.97438 * 7 5 4 34 34 H 1.08998 * 109.46731 * 299.98957 * 7 5 4 35 35 H 1.08995 * 109.47334 * 59.99537 * 7 5 4 36 36 H 1.09005 * 109.58485 * 246.20166 * 13 12 10 37 37 H 1.08998 * 109.58669 * 6.62909 * 13 12 10 38 38 H 1.09008 * 109.63328 * 294.86498 * 14 13 12 39 39 H 1.08996 * 109.43304 * 174.72429 * 14 13 12 40 40 H 1.09003 * 109.46138 * 58.52990 * 15 14 13 41 41 H 0.96995 * 120.00243 * 95.06470 * 16 15 14 42 42 H 0.96995 * 120.00497 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.49545 * 301.41047 * 25 15 14 44 44 H 1.08997 * 109.50342 * 181.31568 * 25 15 14 45 45 H 1.08999 * 109.58672 * 353.37485 * 26 12 10 46 46 H 1.09007 * 109.58330 * 113.65942 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2195 1.0978 0.0000 4 6 3.5154 0.9678 -0.0046 5 7 4.4101 2.0165 -0.0098 6 6 3.9203 3.3971 -0.0173 7 6 5.8507 1.7501 -0.0080 8 16 3.9514 -0.6848 0.0044 9 6 2.2512 -1.1468 0.0063 10 6 1.7294 -2.5128 0.0133 11 8 0.7811 -2.8058 -0.6919 12 7 2.2981 -3.4473 0.8004 13 6 3.3650 -3.0838 1.7430 14 6 2.9687 -3.5765 3.1431 15 6 2.6669 -5.0756 3.0836 16 7 2.3233 -5.5579 4.4236 17 6 3.3145 -5.9240 5.2945 18 1 4.3496 -5.8569 4.9937 19 6 2.9890 -6.3805 6.5644 20 7 1.7276 -6.4620 6.9311 21 14 4.3412 -6.8793 7.7527 22 1 4.7563 -5.6999 8.5537 23 1 3.8361 -7.9409 8.6600 24 1 5.5064 -7.3939 6.9891 25 6 1.4915 -5.3240 2.1354 26 6 1.8672 -4.8501 0.7279 27 1 -0.3634 0.0057 1.0276 28 1 -0.3633 0.8872 -0.5187 29 1 -0.3634 -0.8928 -0.5090 30 1 3.7992 3.7341 -1.0468 31 1 4.6375 4.0398 0.4934 32 1 2.9599 3.4449 0.4960 33 1 6.3947 2.6946 -0.0132 34 1 6.1143 1.1836 0.8852 35 1 6.1149 1.1741 -0.8948 36 1 4.2989 -3.5556 1.4374 37 1 3.4875 -2.0008 1.7563 38 1 2.0825 -3.0402 3.4828 39 1 3.7906 -3.3981 3.8364 40 1 3.5454 -5.6088 2.7202 41 1 1.3937 -5.6179 4.6939 42 1 1.5001 -6.7806 7.8186 43 1 0.6194 -4.7713 2.4847 44 1 1.2621 -6.3893 2.1115 45 1 1.0011 -4.9328 0.0712 46 1 2.6806 -5.4626 0.3389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997067263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:35 Heat of formation + Delta-G solvation = 14.228990 kcal Electronic energy + Delta-G solvation = -27342.978598 eV Core-core repulsion = 23587.157361 eV Total energy + Delta-G solvation = -3755.821237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48089 -40.60452 -38.71621 -37.76964 -36.14248 -33.87999 -32.64526 -31.95076 -31.07928 -29.31453 -29.14114 -27.39833 -26.49398 -24.53277 -24.29788 -23.12667 -22.39317 -21.13480 -19.65346 -19.36184 -19.02241 -17.94049 -17.67199 -16.90345 -16.71747 -16.59255 -16.04524 -15.66573 -15.48285 -15.39871 -15.06910 -15.04918 -14.78622 -14.59168 -14.20933 -13.93711 -13.60932 -13.56482 -13.48755 -13.30017 -13.28084 -13.13412 -12.90716 -12.83400 -12.62921 -12.30833 -12.24393 -12.14381 -12.01523 -11.70652 -11.31706 -11.24085 -10.96900 -10.81314 -10.67121 -10.08710 -9.72936 -8.99474 -8.62212 -7.91549 -5.20535 -0.46859 -0.02265 0.53151 1.49232 1.50681 1.53149 1.59037 1.75386 1.87938 2.17364 2.58274 3.35944 3.41460 3.58262 3.82008 3.90146 4.05904 4.11013 4.12496 4.17517 4.35709 4.36402 4.37725 4.40319 4.60000 4.63096 4.66964 4.68842 4.72832 4.78733 4.81210 4.83230 4.85207 4.92914 5.01329 5.06240 5.21891 5.29955 5.48184 5.54816 5.59911 5.65424 5.83439 6.29303 6.31788 6.78738 7.05590 7.35792 8.11290 8.34680 9.32248 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002932 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.912551 B = 9548.411057 C =10681.777731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.190 3.810 3 N -0.575 5.575 4 C 0.308 3.692 5 N -0.574 5.574 6 C 0.094 3.906 7 C 0.073 3.927 8 S 0.190 5.810 9 C -0.383 4.383 10 C 0.606 3.394 11 O -0.569 6.569 12 N -0.603 5.603 13 C 0.110 3.890 14 C -0.136 4.136 15 C 0.175 3.825 16 N -0.738 5.738 17 C -0.234 4.234 18 H 0.081 0.919 19 C -0.079 4.079 20 N -0.973 5.973 21 Si 0.971 3.029 22 H -0.288 1.288 23 H -0.300 1.300 24 H -0.266 1.266 25 C -0.127 4.127 26 C 0.124 3.876 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 19.559 -18.097 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.301 5.301 4 C -0.060 4.060 5 N -0.290 5.290 6 C -0.050 4.050 7 C -0.068 4.068 8 S 0.442 5.558 9 C -0.509 4.509 10 C 0.395 3.605 11 O -0.451 6.451 12 N -0.335 5.335 13 C -0.014 4.014 14 C -0.177 4.177 15 C 0.067 3.933 16 N -0.377 5.377 17 C -0.366 4.366 18 H 0.099 0.901 19 C -0.271 4.271 20 N -0.624 5.624 21 Si 0.801 3.199 22 H -0.216 1.216 23 H -0.227 1.227 24 H -0.191 1.191 25 C -0.166 4.166 26 C 0.002 3.998 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.201 0.799 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.435 19.521 -18.401 28.785 hybrid contribution -1.098 -0.358 1.260 1.709 sum 9.338 19.163 -17.141 27.354 Atomic orbital electron populations 1.20568 0.86246 1.04410 1.03611 1.20585 0.98171 0.84692 0.91554 1.66056 1.03107 1.31396 1.29583 1.24123 0.91090 0.94474 0.96263 1.46180 1.04823 1.03436 1.74575 1.21930 1.01375 0.79056 1.02633 1.22275 0.75985 1.05519 1.03036 1.83522 1.03692 0.96525 1.72043 1.24793 0.96809 0.97752 1.31574 1.16819 0.81644 0.83076 0.78997 1.90742 1.29126 1.80999 1.44218 1.48077 1.38313 1.08590 1.38479 1.22144 0.89878 1.01420 0.87908 1.22501 1.01011 0.98538 0.95652 1.20403 0.96062 0.92254 0.84628 1.42671 1.05750 1.77618 1.11644 1.19647 0.89399 1.33700 0.93812 0.90121 1.25569 0.98147 1.03615 0.99797 1.69828 1.17483 1.55008 1.20089 0.85163 0.78764 0.77112 0.78879 1.21575 1.22685 1.19051 1.22058 0.98266 1.01583 0.94740 1.21604 1.01566 0.80056 0.96586 0.89939 0.89120 0.90074 0.91991 0.87795 0.91852 0.85922 0.91005 0.90948 0.88976 0.89183 0.94167 0.91346 0.92737 0.79886 0.94218 0.93371 0.90443 0.89365 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.27 10.09 71.23 0.72 -1.55 16 2 C 0.19 5.31 6.83 42.34 0.29 5.60 16 3 N -0.57 -14.88 9.71 -188.52 -1.83 -16.71 16 4 C 0.31 6.52 7.72 179.42 1.38 7.90 16 5 N -0.57 -8.01 3.36 -761.38 -2.56 -10.56 16 6 C 0.09 0.97 10.52 127.77 1.34 2.31 16 7 C 0.07 0.47 9.98 127.77 1.27 1.74 16 8 S 0.19 3.90 19.39 -56.49 -1.10 2.80 16 9 C -0.38 -10.81 5.37 23.99 0.13 -10.69 16 10 C 0.61 19.34 7.29 86.32 0.63 19.96 16 11 O -0.57 -21.05 14.71 -4.54 -0.07 -21.12 16 12 N -0.60 -17.66 2.97 -823.24 -2.44 -20.10 16 13 C 0.11 2.94 5.71 86.51 0.49 3.43 16 14 C -0.14 -4.64 5.67 30.82 0.17 -4.47 16 15 C 0.17 6.64 2.73 45.02 0.12 6.77 16 16 N -0.74 -36.67 5.12 -322.82 -1.65 -38.32 16 17 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 20 N -0.97 -59.77 13.06 21.65 0.28 -59.48 16 21 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.13 -4.27 5.55 30.67 0.17 -4.10 16 26 C 0.12 3.54 6.44 86.36 0.56 4.10 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.08 2.31 6.25 -2.38 -0.01 2.29 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.42 7.92 -2.38 -0.02 0.40 16 32 H 0.06 0.93 7.59 -2.39 -0.02 0.91 16 33 H 0.12 0.06 7.79 -2.39 -0.02 0.04 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.09 2.26 4.59 -10.07 -0.05 2.21 16 38 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 41 H 0.37 20.21 7.80 -92.71 -0.72 19.49 16 42 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.09 2.61 6.99 -2.39 -0.02 2.59 16 46 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -73.54 381.22 1.49 -72.04 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.24 Total: 28.76 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 8.59 Total: 15.18 kcal Atomic # 7 Polarization: -136.99 SS G_CDS: -8.20 Total: -145.19 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.07 Total: -21.12 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.10 Total: 2.80 kcal Total: -73.54 1.49 -72.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997067263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.273 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds