Wall clock time and date at job start Tue Mar 31 2020 21:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30875 * 122.98345 * 2 1 4 4 C 1.30238 * 117.26172 * 179.97438 * 3 2 1 5 5 N 1.37840 * 124.74554 * 180.02562 * 4 3 2 6 6 C 1.46498 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.46502 * 119.99898 * 179.97438 * 5 4 3 8 8 S 1.70920 * 110.50288 * 359.72312 * 4 3 2 9 9 C 1.36708 * 122.98608 * 179.97438 * 2 1 3 10 10 C 1.46235 * 126.10969 * 0.02562 * 9 2 1 11 11 O 1.21746 * 119.99659 * 319.45244 * 10 9 2 12 12 N 1.34777 * 119.99691 * 139.44807 * 10 9 2 13 13 C 1.46934 * 120.60597 * 354.34365 * 12 10 9 14 14 C 1.53189 * 108.77023 * 233.57856 * 13 12 10 15 15 C 1.53042 * 109.34179 * 305.41591 * 14 13 12 16 16 C 1.53038 * 109.53864 * 61.34826 * 15 14 13 17 17 H 1.08998 * 109.49566 * 58.58784 * 16 15 14 18 18 N 1.46493 * 109.49818 * 178.68649 * 16 15 14 19 19 C 1.36939 * 120.00118 * 205.00456 * 18 16 15 20 20 H 1.08002 * 119.99939 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00442 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99570 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00361 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47071 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47462 * 119.99548 * 23 21 19 26 26 H 1.48502 * 109.47364 * 239.99896 * 23 21 19 27 27 C 1.46923 * 120.62390 * 174.36988 * 12 10 9 28 28 H 1.09003 * 109.46781 * 270.01822 * 1 2 3 29 29 H 1.08996 * 109.47470 * 30.02120 * 1 2 3 30 30 H 1.09005 * 109.47096 * 150.02362 * 1 2 3 31 31 H 1.08997 * 109.47142 * 89.99923 * 6 5 4 32 32 H 1.09001 * 109.46868 * 210.00059 * 6 5 4 33 33 H 1.08997 * 109.47214 * 329.99449 * 6 5 4 34 34 H 1.09004 * 109.46854 * 59.99748 * 7 5 4 35 35 H 1.08995 * 109.47272 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47008 * 300.00390 * 7 5 4 37 37 H 1.09000 * 109.55851 * 113.81002 * 13 12 10 38 38 H 1.09004 * 109.61588 * 353.38402 * 13 12 10 39 39 H 1.09004 * 109.49710 * 185.44860 * 14 13 12 40 40 H 1.09001 * 109.50005 * 65.38355 * 14 13 12 41 41 H 1.08993 * 109.45870 * 181.37464 * 15 14 13 42 42 H 1.08998 * 109.45805 * 301.32964 * 15 14 13 43 43 H 0.96998 * 120.00405 * 24.99980 * 18 16 15 44 44 H 0.97000 * 119.99880 * 180.02562 * 22 21 19 45 45 H 1.08988 * 109.59437 * 6.59999 * 27 12 10 46 46 H 1.09007 * 109.58217 * 246.17236 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2194 1.0978 0.0000 4 6 3.5153 0.9680 0.0005 5 7 4.4099 2.0166 0.0011 6 6 3.9201 3.3973 0.0006 7 6 5.8506 1.7504 0.0022 8 16 3.9514 -0.6846 0.0088 9 6 2.2512 -1.1467 0.0005 10 6 1.7295 -2.5128 0.0006 11 8 0.7636 -2.7954 0.6857 12 7 2.3178 -3.4589 -0.7579 13 6 3.4044 -3.1076 -1.6825 14 6 3.0476 -3.6221 -3.0806 15 6 2.7436 -5.1202 -3.0071 16 6 1.5444 -5.3545 -2.0856 17 1 0.6817 -4.8068 -2.4648 18 7 1.2346 -6.7856 -2.0406 19 6 -0.0334 -7.2024 -1.7345 20 1 -0.8050 -6.4761 -1.5259 21 6 -0.3269 -8.5584 -1.6913 22 7 0.6136 -9.4437 -1.9450 23 14 -2.0563 -9.1270 -1.2731 24 1 -2.9212 -7.9443 -1.0311 25 1 -2.6044 -9.9183 -2.4040 26 1 -2.0184 -9.9703 -0.0514 27 6 1.8844 -4.8603 -0.6759 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 3.7979 3.7398 1.0281 32 1 4.6379 4.0372 -0.5128 33 1 2.9604 3.4422 -0.5140 34 1 6.1151 1.1790 -0.8875 35 1 6.3946 2.6949 0.0021 36 1 6.1138 1.1792 0.8924 37 1 4.3323 -3.5716 -1.3482 38 1 3.5246 -2.0246 -1.7113 39 1 3.8870 -3.4539 -3.7554 40 1 2.1709 -3.0907 -3.4510 41 1 2.5132 -5.4933 -4.0049 42 1 3.6123 -5.6481 -2.6138 43 1 1.9276 -7.4380 -2.2276 44 1 0.4085 -10.3913 -1.9152 45 1 1.0020 -4.9335 -0.0404 46 1 2.6883 -5.4677 -0.2599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000395011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:44 Heat of formation + Delta-G solvation = 36.406777 kcal Electronic energy + Delta-G solvation = -27420.470647 eV Core-core repulsion = 23665.611111 eV Total energy + Delta-G solvation = -3754.859536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.34461 -39.47848 -37.44006 -36.83850 -34.43566 -32.27901 -31.50826 -31.07991 -28.91573 -28.83925 -27.68549 -26.69777 -24.92196 -23.95419 -22.39471 -21.86695 -21.34331 -19.71871 -18.49346 -18.37254 -17.06271 -16.77673 -16.68911 -16.11729 -15.51427 -15.11686 -14.90864 -14.42827 -14.28569 -14.07852 -13.87632 -13.63154 -13.40932 -13.22854 -13.19935 -13.09171 -12.74595 -12.58474 -12.48711 -12.40101 -12.32341 -12.19323 -11.36955 -11.34785 -11.05653 -10.82631 -10.68254 -10.55246 -10.18302 -10.13826 -9.93088 -9.78276 -9.69741 -9.55416 -9.15507 -9.04568 -8.31135 -7.80775 -6.96702 -5.75925 -3.05460 0.50684 0.84134 1.49478 2.40696 2.58343 3.15989 3.43049 3.47159 3.53440 3.56143 4.15030 4.54812 4.61173 4.72206 4.76408 4.80562 4.97060 5.05283 5.11037 5.11930 5.16213 5.31417 5.36684 5.51743 5.57351 5.63425 5.68248 5.69283 5.75970 5.83231 5.96506 6.07656 6.15268 6.20371 6.25003 6.26717 6.38605 6.52834 6.57751 6.78872 6.86590 7.05112 7.63797 7.74809 7.75927 8.41053 8.44442 9.54304 10.08345 10.43738 11.46470 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002737 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.582715 B =10227.764500 C =11022.342775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.189 3.811 3 N -0.551 5.551 4 C 0.311 3.689 5 N -0.582 5.582 6 C 0.100 3.900 7 C 0.086 3.914 8 S 0.145 5.855 9 C -0.337 4.337 10 C 0.598 3.402 11 O -0.528 6.528 12 N -0.601 5.601 13 C 0.100 3.900 14 C -0.127 4.127 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.052 0.948 18 N -0.718 5.718 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.095 3.905 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.092 0.908 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 26.321 1.063 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 N -0.276 5.276 4 C -0.056 4.056 5 N -0.301 5.301 6 C -0.045 4.045 7 C -0.057 4.057 8 S 0.397 5.603 9 C -0.463 4.463 10 C 0.384 3.616 11 O -0.406 6.406 12 N -0.335 5.335 13 C -0.024 4.024 14 C -0.166 4.166 15 C -0.164 4.164 16 C 0.058 3.942 17 H 0.070 0.930 18 N -0.359 5.359 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.029 4.029 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.111 0.889 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.100 26.263 1.479 29.845 hybrid contribution -1.328 -0.512 0.230 1.441 sum 12.772 25.752 1.709 28.796 Atomic orbital electron populations 1.20446 0.86314 1.03370 1.03763 1.20381 0.97596 0.84330 0.92562 1.65999 1.02203 1.31677 1.27770 1.23759 0.90989 0.93287 0.97615 1.45650 1.03820 1.03419 1.77167 1.21746 1.01127 0.79642 1.01966 1.21911 0.77987 1.03349 1.02446 1.83853 1.06872 0.97254 1.72319 1.25041 0.94256 0.98851 1.28159 1.16639 0.82781 0.82305 0.79836 1.90835 1.26513 1.80620 1.42671 1.48131 1.36229 1.09076 1.40050 1.21958 0.89893 1.00528 0.90053 1.21853 1.01779 0.97337 0.95582 1.21827 0.99203 0.94406 1.00979 1.20486 0.95026 0.87306 0.91421 0.93036 1.42384 1.10444 0.99707 1.83354 1.19330 0.87435 0.91018 1.39293 0.90940 1.24745 0.97774 0.95832 1.02447 1.69674 1.31838 1.00633 1.55963 0.86119 0.84135 0.78473 0.77540 1.20386 1.21889 1.21826 1.22798 1.00830 0.77395 1.01920 0.89689 0.90730 0.89897 0.92752 0.91070 0.90062 0.91590 0.89073 0.91695 0.91423 0.90082 0.91008 0.91568 0.91359 0.92030 0.78090 0.93562 0.88939 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.64 36.00 0.35 -0.69 16 2 C 0.19 2.69 6.83 -83.55 -0.57 2.12 16 3 N -0.55 -7.25 9.71 -10.94 -0.11 -7.36 16 4 C 0.31 3.44 7.72 -87.97 -0.68 2.76 16 5 N -0.58 -4.56 3.36 -192.01 -0.64 -5.21 16 6 C 0.10 0.60 10.51 59.85 0.63 1.23 16 7 C 0.09 0.38 9.98 59.85 0.60 0.97 16 8 S 0.14 1.59 19.31 -107.50 -2.08 -0.49 16 9 C -0.34 -4.98 5.41 -36.92 -0.20 -5.18 16 10 C 0.60 10.56 7.08 -13.05 -0.09 10.46 16 11 O -0.53 -11.13 15.40 5.15 0.08 -11.05 16 12 N -0.60 -9.97 2.97 -174.46 -0.52 -10.49 16 13 C 0.10 1.28 5.66 -3.71 -0.02 1.26 16 14 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 15 C -0.13 -2.02 5.36 -26.69 -0.14 -2.16 16 16 C 0.17 3.41 2.92 -67.81 -0.20 3.22 16 17 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 18 N -0.72 -18.00 5.12 -53.31 -0.27 -18.28 16 19 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 20 H 0.07 2.04 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 23 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 C 0.09 1.85 6.03 -3.71 -0.02 1.83 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.18 7.26 -51.93 -0.38 0.80 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.24 7.92 -51.93 -0.41 -0.17 16 33 H 0.08 0.61 7.59 -51.93 -0.39 0.22 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 0.17 7.79 -51.93 -0.40 -0.23 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.95 4.54 -38.26 -0.17 0.77 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 2.09 6.99 -51.94 -0.36 1.73 16 46 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -34.45 382.13 -9.90 -44.35 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.06 Total: 5.67 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.76 Total: 6.71 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -0.82 Total: -68.83 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.08 Total: -0.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.45 -9.90 -44.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000395011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.757 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds