Wall clock time and date at job start Tue Mar 31 2020 21:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30875 * 122.98345 * 2 1 4 4 C 1.30238 * 117.26172 * 179.97438 * 3 2 1 5 5 N 1.37840 * 124.74554 * 180.02562 * 4 3 2 6 6 C 1.46498 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.46502 * 119.99898 * 179.97438 * 5 4 3 8 8 S 1.70920 * 110.50288 * 359.72312 * 4 3 2 9 9 C 1.36708 * 122.98608 * 179.97438 * 2 1 3 10 10 C 1.46235 * 126.10969 * 0.02562 * 9 2 1 11 11 O 1.21746 * 119.99659 * 319.45244 * 10 9 2 12 12 N 1.34777 * 119.99691 * 139.44807 * 10 9 2 13 13 C 1.46934 * 120.60597 * 354.34365 * 12 10 9 14 14 C 1.53189 * 108.77023 * 233.57856 * 13 12 10 15 15 C 1.53042 * 109.34179 * 305.41591 * 14 13 12 16 16 C 1.53038 * 109.53864 * 61.34826 * 15 14 13 17 17 H 1.08998 * 109.49566 * 58.58784 * 16 15 14 18 18 N 1.46493 * 109.49818 * 178.68649 * 16 15 14 19 19 C 1.36939 * 120.00118 * 205.00456 * 18 16 15 20 20 H 1.08002 * 119.99939 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00442 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99570 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00361 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47071 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47462 * 119.99548 * 23 21 19 26 26 H 1.48502 * 109.47364 * 239.99896 * 23 21 19 27 27 C 1.46923 * 120.62390 * 174.36988 * 12 10 9 28 28 H 1.09003 * 109.46781 * 270.01822 * 1 2 3 29 29 H 1.08996 * 109.47470 * 30.02120 * 1 2 3 30 30 H 1.09005 * 109.47096 * 150.02362 * 1 2 3 31 31 H 1.08997 * 109.47142 * 89.99923 * 6 5 4 32 32 H 1.09001 * 109.46868 * 210.00059 * 6 5 4 33 33 H 1.08997 * 109.47214 * 329.99449 * 6 5 4 34 34 H 1.09004 * 109.46854 * 59.99748 * 7 5 4 35 35 H 1.08995 * 109.47272 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47008 * 300.00390 * 7 5 4 37 37 H 1.09000 * 109.55851 * 113.81002 * 13 12 10 38 38 H 1.09004 * 109.61588 * 353.38402 * 13 12 10 39 39 H 1.09004 * 109.49710 * 185.44860 * 14 13 12 40 40 H 1.09001 * 109.50005 * 65.38355 * 14 13 12 41 41 H 1.08993 * 109.45870 * 181.37464 * 15 14 13 42 42 H 1.08998 * 109.45805 * 301.32964 * 15 14 13 43 43 H 0.96998 * 120.00405 * 24.99980 * 18 16 15 44 44 H 0.97000 * 119.99880 * 180.02562 * 22 21 19 45 45 H 1.08988 * 109.59437 * 6.59999 * 27 12 10 46 46 H 1.09007 * 109.58217 * 246.17236 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2194 1.0978 0.0000 4 6 3.5153 0.9680 0.0005 5 7 4.4099 2.0166 0.0011 6 6 3.9201 3.3973 0.0006 7 6 5.8506 1.7504 0.0022 8 16 3.9514 -0.6846 0.0088 9 6 2.2512 -1.1467 0.0005 10 6 1.7295 -2.5128 0.0006 11 8 0.7636 -2.7954 0.6857 12 7 2.3178 -3.4589 -0.7579 13 6 3.4044 -3.1076 -1.6825 14 6 3.0476 -3.6221 -3.0806 15 6 2.7436 -5.1202 -3.0071 16 6 1.5444 -5.3545 -2.0856 17 1 0.6817 -4.8068 -2.4648 18 7 1.2346 -6.7856 -2.0406 19 6 -0.0334 -7.2024 -1.7345 20 1 -0.8050 -6.4761 -1.5259 21 6 -0.3269 -8.5584 -1.6913 22 7 0.6136 -9.4437 -1.9450 23 14 -2.0563 -9.1270 -1.2731 24 1 -2.9212 -7.9443 -1.0311 25 1 -2.6044 -9.9183 -2.4040 26 1 -2.0184 -9.9703 -0.0514 27 6 1.8844 -4.8603 -0.6759 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 3.7979 3.7398 1.0281 32 1 4.6379 4.0372 -0.5128 33 1 2.9604 3.4422 -0.5140 34 1 6.1151 1.1790 -0.8875 35 1 6.3946 2.6949 0.0021 36 1 6.1138 1.1792 0.8924 37 1 4.3323 -3.5716 -1.3482 38 1 3.5246 -2.0246 -1.7113 39 1 3.8870 -3.4539 -3.7554 40 1 2.1709 -3.0907 -3.4510 41 1 2.5132 -5.4933 -4.0049 42 1 3.6123 -5.6481 -2.6138 43 1 1.9276 -7.4380 -2.2276 44 1 0.4085 -10.3913 -1.9152 45 1 1.0020 -4.9335 -0.0404 46 1 2.6883 -5.4677 -0.2599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000395011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:43 Heat of formation + Delta-G solvation = 13.381118 kcal Electronic energy + Delta-G solvation = -27421.469115 eV Core-core repulsion = 23665.611111 eV Total energy + Delta-G solvation = -3755.858004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47715 -40.61027 -38.68517 -37.75152 -36.22415 -33.95300 -32.79260 -32.37062 -30.46297 -29.28944 -29.02474 -27.40895 -26.20730 -25.90064 -23.31881 -23.14888 -22.58781 -21.12467 -19.56484 -19.36052 -19.10568 -17.90820 -17.67533 -16.99229 -16.78877 -16.52825 -16.01067 -15.69388 -15.52500 -15.45532 -15.15282 -15.00652 -14.90403 -14.41822 -14.05238 -13.97736 -13.77725 -13.58783 -13.54164 -13.47333 -13.27379 -13.10057 -12.91978 -12.88522 -12.53680 -12.31748 -12.18723 -12.11140 -11.91254 -11.73561 -11.36196 -11.28067 -11.08514 -10.85193 -10.67766 -10.06720 -9.78325 -9.02104 -8.61996 -7.98521 -5.27504 -0.46924 -0.03275 0.52723 1.44124 1.45559 1.53755 1.55771 1.75958 1.89672 2.16940 2.53818 3.34409 3.35066 3.62092 3.72923 3.99734 4.03713 4.12087 4.12513 4.21310 4.31876 4.37114 4.38429 4.42722 4.55149 4.63020 4.65060 4.69175 4.70804 4.79014 4.81299 4.85272 4.88247 4.94646 5.03028 5.10620 5.18234 5.37114 5.43547 5.44237 5.56551 5.66838 5.84186 6.24491 6.37965 6.78498 7.09444 7.31263 8.02706 8.28933 9.24292 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002737 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.582715 B =10227.764500 C =11022.342775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.193 3.807 3 N -0.573 5.573 4 C 0.310 3.690 5 N -0.572 5.572 6 C 0.093 3.907 7 C 0.073 3.927 8 S 0.198 5.802 9 C -0.382 4.382 10 C 0.596 3.404 11 O -0.579 6.579 12 N -0.601 5.601 13 C 0.096 3.904 14 C -0.118 4.118 15 C -0.117 4.117 16 C 0.168 3.832 17 H 0.030 0.970 18 N -0.728 5.728 19 C -0.242 4.242 20 H 0.064 0.936 21 C -0.068 4.068 22 N -0.963 5.963 23 Si 0.967 3.033 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.291 1.291 27 C 0.110 3.890 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.378 0.622 44 H 0.253 0.747 45 H 0.051 0.949 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.624 29.084 0.396 33.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.053 3.947 3 N -0.300 5.300 4 C -0.058 4.058 5 N -0.288 5.288 6 C -0.050 4.050 7 C -0.069 4.069 8 S 0.450 5.550 9 C -0.508 4.508 10 C 0.384 3.616 11 O -0.460 6.460 12 N -0.334 5.334 13 C -0.026 4.026 14 C -0.156 4.156 15 C -0.155 4.155 16 C 0.058 3.942 17 H 0.048 0.952 18 N -0.368 5.368 19 C -0.374 4.374 20 H 0.082 0.918 21 C -0.261 4.261 22 N -0.613 5.613 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.214 1.214 26 H -0.218 1.218 27 C -0.015 4.015 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.211 0.789 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.935 29.115 0.790 33.691 hybrid contribution -2.047 -1.136 0.454 2.385 sum 14.888 27.980 1.245 31.718 Atomic orbital electron populations 1.20403 0.86478 1.03216 1.03594 1.20516 0.97985 0.84729 0.91467 1.66055 1.03177 1.31070 1.29673 1.24134 0.91050 0.94524 0.96095 1.46187 1.04823 1.03361 1.74447 1.21937 1.01490 0.79059 1.02555 1.22292 0.75884 1.05565 1.03122 1.83431 1.03064 0.96263 1.72242 1.24736 0.97235 0.97119 1.31670 1.17057 0.82055 0.83483 0.78976 1.90791 1.28799 1.81759 1.44665 1.48134 1.37025 1.07534 1.40664 1.22273 0.89250 1.01955 0.89173 1.21841 1.03188 0.94257 0.96330 1.21730 0.97162 0.97237 0.99369 1.20628 0.96336 0.84470 0.92729 0.95180 1.42495 1.09284 1.01632 1.83400 1.19541 0.88588 0.91092 1.38215 0.91767 1.25470 1.01328 0.95996 1.03277 1.69796 1.33473 1.00612 1.57462 0.85168 0.80158 0.77908 0.77125 1.19858 1.21420 1.21833 1.22262 0.99248 0.79652 1.00359 0.89890 0.88877 0.91880 0.92293 0.87577 0.91724 0.90533 0.85896 0.91238 0.89209 0.88296 0.86788 0.92274 0.91703 0.91068 0.78897 0.93832 0.93018 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.10 9.64 71.23 0.69 -1.41 16 2 C 0.19 5.47 6.83 42.34 0.29 5.76 16 3 N -0.57 -14.36 9.71 -188.53 -1.83 -16.19 16 4 C 0.31 6.11 7.72 179.42 1.38 7.49 16 5 N -0.57 -6.92 3.36 -761.39 -2.56 -9.48 16 6 C 0.09 0.81 10.51 127.77 1.34 2.15 16 7 C 0.07 0.31 9.98 127.77 1.27 1.59 16 8 S 0.20 3.86 19.31 -56.49 -1.09 2.77 16 9 C -0.38 -11.19 5.41 23.99 0.13 -11.06 16 10 C 0.60 21.76 7.08 86.32 0.61 22.37 16 11 O -0.58 -26.05 15.40 -4.49 -0.07 -26.12 16 12 N -0.60 -20.13 2.97 -824.07 -2.45 -22.58 16 13 C 0.10 2.25 5.66 86.36 0.49 2.74 16 14 C -0.12 -2.70 6.08 30.67 0.19 -2.52 16 15 C -0.12 -3.62 5.36 30.62 0.16 -3.46 16 16 C 0.17 7.00 2.92 45.07 0.13 7.13 16 17 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 18 N -0.73 -37.70 5.12 -322.58 -1.65 -39.35 16 19 C -0.24 -14.11 9.93 84.03 0.83 -13.27 16 20 H 0.06 3.77 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 22 N -0.96 -59.45 13.06 21.65 0.28 -59.17 16 23 Si 0.97 48.14 29.55 68.60 2.03 50.17 16 24 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 27 C 0.11 4.48 6.03 86.36 0.52 5.00 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.93 7.26 -2.38 -0.02 1.91 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.21 7.92 -2.39 -0.02 0.19 16 33 H 0.06 0.83 7.59 -2.39 -0.02 0.81 16 34 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 35 H 0.12 -0.19 7.79 -2.39 -0.02 -0.21 16 36 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 2.03 4.54 -11.07 -0.05 1.98 16 39 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.38 20.41 7.80 -92.71 -0.72 19.69 16 44 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.05 2.51 6.99 -2.39 -0.02 2.49 16 46 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -78.89 382.13 1.40 -77.49 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.23 Total: 23.49 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 8.51 Total: 18.96 kcal Atomic # 7 Polarization: -138.56 SS G_CDS: -8.21 Total: -146.77 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.09 Total: 2.77 kcal Total: -78.89 1.40 -77.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000395011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.870 kcal (2) G-P(sol) polarization free energy of solvation -78.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds