Wall clock time and date at job start Tue Mar 31 2020 21:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30888 * 122.98224 * 2 1 4 4 C 1.30235 * 117.26159 * 180.30775 * 3 2 1 5 5 N 1.37842 * 124.74818 * 179.72508 * 4 3 2 6 6 C 1.46500 * 119.99733 * 359.97438 * 5 4 3 7 7 C 1.46493 * 120.00050 * 179.97438 * 5 4 3 8 8 S 1.70918 * 110.50560 * 359.70983 * 4 3 2 9 9 C 1.36710 * 122.99184 * 179.76519 * 2 1 3 10 10 C 1.46219 * 126.10503 * 0.02562 * 9 2 1 11 11 O 1.21757 * 120.00111 * 6.93091 * 10 9 2 12 12 N 1.34783 * 119.99988 * 186.92797 * 10 9 2 13 13 C 1.46496 * 119.99857 * 5.49802 * 12 10 9 14 14 C 1.46496 * 120.00029 * 185.49916 * 12 10 9 15 15 C 1.53005 * 109.46944 * 262.59622 * 14 12 10 16 16 H 1.08996 * 112.96323 * 307.61316 * 15 14 12 17 17 C 1.53954 * 113.76643 * 175.93994 * 15 14 12 18 18 C 1.53947 * 86.28672 * 222.08939 * 17 15 14 19 19 N 1.47579 * 113.77070 * 79.30080 * 15 14 12 20 20 C 1.36939 * 134.48996 * 318.92513 * 19 15 14 21 21 H 1.08000 * 120.00224 * 328.92732 * 20 19 15 22 22 C 1.38810 * 120.00094 * 148.92333 * 20 19 15 23 23 N 1.31617 * 120.00573 * 166.75970 * 22 20 19 24 24 Si 1.86807 * 119.99780 * 346.76012 * 22 20 19 25 25 H 1.48502 * 109.47071 * 89.24425 * 24 22 20 26 26 H 1.48500 * 109.46864 * 209.24176 * 24 22 20 27 27 H 1.48496 * 109.47004 * 329.24359 * 24 22 20 28 28 H 1.08995 * 109.47348 * 270.23147 * 1 2 3 29 29 H 1.09002 * 109.47311 * 30.23867 * 1 2 3 30 30 H 1.09005 * 109.46800 * 150.23259 * 1 2 3 31 31 H 1.09005 * 109.46903 * 89.99805 * 6 5 4 32 32 H 1.08997 * 109.47163 * 209.99563 * 6 5 4 33 33 H 1.09001 * 109.47119 * 330.00059 * 6 5 4 34 34 H 1.09001 * 109.47605 * 60.00462 * 7 5 4 35 35 H 1.09008 * 109.47348 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47248 * 300.00094 * 7 5 4 37 37 H 1.08998 * 109.47336 * 276.00823 * 13 12 10 38 38 H 1.09003 * 109.47053 * 36.00680 * 13 12 10 39 39 H 1.08997 * 109.46907 * 156.00862 * 13 12 10 40 40 H 1.08995 * 109.47359 * 142.59818 * 14 12 10 41 41 H 1.09002 * 109.47603 * 22.59438 * 14 12 10 42 42 H 1.08996 * 113.74051 * 336.43748 * 17 15 14 43 43 H 1.09002 * 113.73880 * 107.63727 * 17 15 14 44 44 H 1.09000 * 113.76286 * 137.90970 * 18 17 15 45 45 H 1.08999 * 113.77100 * 269.19750 * 18 17 15 46 46 H 0.96991 * 120.00809 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2195 1.0979 0.0000 4 6 3.5153 0.9681 -0.0062 5 7 4.4099 2.0168 -0.0126 6 6 3.9201 3.3975 -0.0133 7 6 5.8505 1.7506 -0.0187 8 16 3.9515 -0.6845 -0.0049 9 6 2.2514 -1.1466 0.0047 10 6 1.7297 -2.5126 0.0098 11 8 0.5347 -2.7084 -0.1172 12 7 2.5716 -3.5550 0.1549 13 6 3.9912 -3.3175 0.4279 14 6 2.0672 -4.9256 0.0397 15 6 1.7958 -5.4882 1.4364 16 1 2.6501 -5.3932 2.1065 17 6 1.1671 -6.8935 1.4278 18 6 0.2520 -6.3818 2.5550 19 7 0.5232 -5.0287 2.0258 20 6 -0.1388 -3.8306 2.0652 21 1 0.4184 -2.9054 2.0635 22 6 -1.5260 -3.8052 2.1073 23 7 -2.1551 -2.6883 2.4056 24 14 -2.5001 -5.3564 1.7405 25 1 -2.7076 -6.1195 2.9975 26 1 -3.8172 -4.9885 1.1616 27 1 -1.7498 -6.1943 0.7709 28 1 -0.3634 0.0042 1.0276 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 3.8033 3.7420 1.0142 32 1 4.6350 4.0364 -0.5317 33 1 2.9574 3.4412 -0.5228 34 1 6.1104 1.1775 -0.9087 35 1 6.3945 2.6952 -0.0228 36 1 6.1186 1.1812 0.8712 37 1 4.5166 -3.1382 -0.5102 38 1 4.0960 -2.4467 1.0751 39 1 4.4173 -4.1907 0.9218 40 1 2.8097 -5.5449 -0.4635 41 1 1.1428 -4.9252 -0.5378 42 1 0.6368 -7.1314 0.5057 43 1 1.8516 -7.6823 1.7399 44 1 -0.7872 -6.6945 2.4530 45 1 0.6507 -6.5504 3.5553 46 1 -3.1244 -2.6706 2.4353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085857139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:53 Heat of formation + Delta-G solvation = 106.861592 kcal Electronic energy + Delta-G solvation = -28580.541529 eV Core-core repulsion = 24828.737143 eV Total energy + Delta-G solvation = -3751.804386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.79523 -39.06417 -37.74440 -36.64627 -34.76420 -31.96614 -30.90070 -29.23157 -28.54429 -28.13288 -27.31105 -26.30795 -25.78633 -23.14068 -22.76338 -21.91518 -20.48661 -18.89356 -18.14918 -18.03772 -16.92426 -16.30973 -16.23406 -15.78296 -15.38831 -14.97757 -14.80720 -14.57614 -14.13010 -13.59154 -13.50640 -13.22080 -13.01903 -12.94178 -12.81721 -12.74922 -12.40528 -12.29091 -12.23828 -12.13806 -11.81190 -11.59243 -11.40334 -11.15601 -10.94644 -10.79576 -10.65336 -10.26499 -10.20616 -9.72594 -9.56469 -9.34137 -9.22234 -8.88158 -8.79401 -8.32114 -7.93799 -7.34972 -6.66080 -5.64828 -3.00596 0.95458 1.34869 1.99294 2.78286 3.07945 3.50404 3.58685 3.63515 3.67569 4.07656 4.53402 4.76701 4.84198 4.91735 4.99276 5.04318 5.21195 5.27429 5.34361 5.39183 5.41444 5.48331 5.60870 5.64665 5.71958 5.76882 5.87908 5.90445 5.99984 6.21408 6.24973 6.26047 6.37762 6.44132 6.54176 6.55657 6.64462 6.70181 6.89780 7.07737 7.17530 7.23814 7.66952 8.02358 8.23744 8.62967 9.04506 9.10109 9.95622 10.61536 11.52656 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.004096 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.404553 B = 6834.101968 C = 8047.465280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.199 3.801 3 N -0.555 5.555 4 C 0.290 3.710 5 N -0.586 5.586 6 C 0.101 3.899 7 C 0.091 3.909 8 S 0.127 5.873 9 C -0.329 4.329 10 C 0.578 3.422 11 O -0.454 6.454 12 N -0.616 5.616 13 C 0.074 3.926 14 C 0.126 3.874 15 C 0.126 3.874 16 H 0.049 0.951 17 C -0.148 4.148 18 C 0.099 3.901 19 N -0.611 5.611 20 C -0.190 4.190 21 H 0.088 0.912 22 C 0.034 3.966 23 N -0.912 5.912 24 Si 0.884 3.116 25 H -0.295 1.295 26 H -0.306 1.306 27 H -0.273 1.273 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.042 0.958 45 H 0.040 0.960 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.378 5.032 -6.607 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 N -0.280 5.280 4 C -0.076 4.076 5 N -0.305 5.305 6 C -0.044 4.044 7 C -0.052 4.052 8 S 0.379 5.621 9 C -0.454 4.454 10 C 0.365 3.635 11 O -0.326 6.326 12 N -0.352 5.352 13 C -0.072 4.072 14 C 0.002 3.998 15 C 0.018 3.982 16 H 0.067 0.933 17 C -0.187 4.187 18 C -0.025 4.025 19 N -0.339 5.339 20 C -0.316 4.316 21 H 0.105 0.895 22 C -0.164 4.164 23 N -0.556 5.556 24 Si 0.717 3.283 25 H -0.223 1.223 26 H -0.234 1.234 27 H -0.198 1.198 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.331 5.419 -6.678 21.157 hybrid contribution -1.254 -0.597 0.144 1.397 sum 18.076 4.822 -6.534 19.816 Atomic orbital electron populations 1.20675 0.85452 1.03716 1.04712 1.20576 0.97979 0.84274 0.90981 1.66066 1.02363 1.32348 1.27234 1.24218 0.91383 0.94462 0.97533 1.45555 1.03651 1.03406 1.77932 1.21690 1.00928 0.80037 1.01732 1.21810 0.78429 1.02876 1.02103 1.83940 1.08569 0.95990 1.73580 1.25182 0.92806 0.99234 1.28156 1.16477 0.86026 0.81889 0.79119 1.91028 1.12906 1.83360 1.45265 1.47333 1.07597 1.06351 1.73912 1.21721 0.82972 1.01891 1.00582 1.21701 0.99698 0.80440 0.97970 1.22781 0.91464 0.90974 0.92990 0.93316 1.23613 0.99004 0.96055 1.00025 1.22817 0.97420 0.87369 0.94942 1.46210 1.20985 1.07048 1.59635 1.18460 0.88510 0.82147 1.42528 0.89472 1.25050 0.96200 0.95600 0.99541 1.69734 1.07773 1.26034 1.52057 0.86790 0.78910 0.84474 0.78134 1.22327 1.23415 1.19841 0.89121 0.92093 0.87636 0.92997 0.91502 0.90193 0.92007 0.89515 0.91944 0.92955 0.91175 0.90085 0.91862 0.89035 0.90369 0.92527 0.93974 0.94277 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.80 36.00 0.35 -1.44 16 2 C 0.20 3.94 6.83 -83.55 -0.57 3.37 16 3 N -0.55 -10.00 9.71 -10.94 -0.11 -10.11 16 4 C 0.29 4.35 7.72 -87.97 -0.68 3.67 16 5 N -0.59 -6.58 3.36 -192.01 -0.64 -7.23 16 6 C 0.10 0.95 10.51 59.85 0.63 1.58 16 7 C 0.09 0.64 9.98 59.84 0.60 1.24 16 8 S 0.13 1.77 17.19 -107.50 -1.85 -0.08 16 9 C -0.33 -6.29 6.22 -36.93 -0.23 -6.52 16 10 C 0.58 12.30 6.33 -13.05 -0.08 12.22 16 11 O -0.45 -11.54 10.43 5.14 0.05 -11.49 16 12 N -0.62 -11.06 2.88 -183.29 -0.53 -11.59 16 13 C 0.07 0.98 8.87 59.84 0.53 1.51 16 14 C 0.13 2.23 5.30 -4.04 -0.02 2.21 16 15 C 0.13 2.42 4.52 -66.86 -0.30 2.12 16 16 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.15 -2.61 7.86 -25.79 -0.20 -2.82 16 18 C 0.10 2.16 7.63 -2.85 -0.02 2.13 16 19 N -0.61 -15.10 3.12 -169.72 -0.53 -15.63 16 20 C -0.19 -5.51 8.07 -15.06 -0.12 -5.63 16 21 H 0.09 2.78 6.25 -52.49 -0.33 2.45 16 22 C 0.03 1.04 5.50 -17.43 -0.10 0.94 16 23 N -0.91 -29.08 13.97 55.49 0.78 -28.31 16 24 Si 0.88 24.07 24.89 -169.99 -4.23 19.83 16 25 H -0.30 -7.90 7.05 56.52 0.40 -7.50 16 26 H -0.31 -8.50 7.11 56.52 0.40 -8.10 16 27 H -0.27 -7.19 6.83 56.52 0.39 -6.80 16 28 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.11 2.41 5.90 -51.93 -0.31 2.10 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.42 7.92 -51.93 -0.41 0.01 16 33 H 0.08 0.90 7.59 -51.93 -0.39 0.51 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.38 7.80 -51.92 -0.40 -0.02 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 38 H 0.07 0.97 5.12 -28.01 -0.14 0.83 16 39 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 40 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 41 H 0.09 1.92 7.29 -51.93 -0.38 1.54 16 42 H 0.08 1.40 8.10 -51.93 -0.42 0.97 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.99 4.08 -51.93 -0.21 0.78 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -36.90 368.83 -8.48 -45.38 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.76 Total: -0.94 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -0.22 Total: 14.60 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.03 Total: -72.87 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.05 Total: -11.49 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -4.23 Total: 19.83 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.85 Total: -0.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.90 -8.48 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085857139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.245 kcal (2) G-P(sol) polarization free energy of solvation -36.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds