Wall clock time and date at job start Tue Mar 31 2020 21:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30888 * 122.98224 * 2 1 4 4 C 1.30235 * 117.26159 * 180.30775 * 3 2 1 5 5 N 1.37842 * 124.74818 * 179.72508 * 4 3 2 6 6 C 1.46500 * 119.99733 * 359.97438 * 5 4 3 7 7 C 1.46493 * 120.00050 * 179.97438 * 5 4 3 8 8 S 1.70918 * 110.50560 * 359.70983 * 4 3 2 9 9 C 1.36710 * 122.99184 * 179.76519 * 2 1 3 10 10 C 1.46219 * 126.10503 * 0.02562 * 9 2 1 11 11 O 1.21757 * 120.00111 * 6.93091 * 10 9 2 12 12 N 1.34783 * 119.99988 * 186.92797 * 10 9 2 13 13 C 1.46496 * 119.99857 * 5.49802 * 12 10 9 14 14 C 1.46496 * 120.00029 * 185.49916 * 12 10 9 15 15 C 1.53005 * 109.46944 * 262.59622 * 14 12 10 16 16 H 1.08996 * 112.96323 * 307.61316 * 15 14 12 17 17 C 1.53954 * 113.76643 * 175.93994 * 15 14 12 18 18 C 1.53947 * 86.28672 * 222.08939 * 17 15 14 19 19 N 1.47579 * 113.77070 * 79.30080 * 15 14 12 20 20 C 1.36939 * 134.48996 * 318.92513 * 19 15 14 21 21 H 1.08000 * 120.00224 * 328.92732 * 20 19 15 22 22 C 1.38810 * 120.00094 * 148.92333 * 20 19 15 23 23 N 1.31617 * 120.00573 * 166.75970 * 22 20 19 24 24 Si 1.86807 * 119.99780 * 346.76012 * 22 20 19 25 25 H 1.48502 * 109.47071 * 89.24425 * 24 22 20 26 26 H 1.48500 * 109.46864 * 209.24176 * 24 22 20 27 27 H 1.48496 * 109.47004 * 329.24359 * 24 22 20 28 28 H 1.08995 * 109.47348 * 270.23147 * 1 2 3 29 29 H 1.09002 * 109.47311 * 30.23867 * 1 2 3 30 30 H 1.09005 * 109.46800 * 150.23259 * 1 2 3 31 31 H 1.09005 * 109.46903 * 89.99805 * 6 5 4 32 32 H 1.08997 * 109.47163 * 209.99563 * 6 5 4 33 33 H 1.09001 * 109.47119 * 330.00059 * 6 5 4 34 34 H 1.09001 * 109.47605 * 60.00462 * 7 5 4 35 35 H 1.09008 * 109.47348 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47248 * 300.00094 * 7 5 4 37 37 H 1.08998 * 109.47336 * 276.00823 * 13 12 10 38 38 H 1.09003 * 109.47053 * 36.00680 * 13 12 10 39 39 H 1.08997 * 109.46907 * 156.00862 * 13 12 10 40 40 H 1.08995 * 109.47359 * 142.59818 * 14 12 10 41 41 H 1.09002 * 109.47603 * 22.59438 * 14 12 10 42 42 H 1.08996 * 113.74051 * 336.43748 * 17 15 14 43 43 H 1.09002 * 113.73880 * 107.63727 * 17 15 14 44 44 H 1.09000 * 113.76286 * 137.90970 * 18 17 15 45 45 H 1.08999 * 113.77100 * 269.19750 * 18 17 15 46 46 H 0.96991 * 120.00809 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2195 1.0979 0.0000 4 6 3.5153 0.9681 -0.0062 5 7 4.4099 2.0168 -0.0126 6 6 3.9201 3.3975 -0.0133 7 6 5.8505 1.7506 -0.0187 8 16 3.9515 -0.6845 -0.0049 9 6 2.2514 -1.1466 0.0047 10 6 1.7297 -2.5126 0.0098 11 8 0.5347 -2.7084 -0.1172 12 7 2.5716 -3.5550 0.1549 13 6 3.9912 -3.3175 0.4279 14 6 2.0672 -4.9256 0.0397 15 6 1.7958 -5.4882 1.4364 16 1 2.6501 -5.3932 2.1065 17 6 1.1671 -6.8935 1.4278 18 6 0.2520 -6.3818 2.5550 19 7 0.5232 -5.0287 2.0258 20 6 -0.1388 -3.8306 2.0652 21 1 0.4184 -2.9054 2.0635 22 6 -1.5260 -3.8052 2.1073 23 7 -2.1551 -2.6883 2.4056 24 14 -2.5001 -5.3564 1.7405 25 1 -2.7076 -6.1195 2.9975 26 1 -3.8172 -4.9885 1.1616 27 1 -1.7498 -6.1943 0.7709 28 1 -0.3634 0.0042 1.0276 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 3.8033 3.7420 1.0142 32 1 4.6350 4.0364 -0.5317 33 1 2.9574 3.4412 -0.5228 34 1 6.1104 1.1775 -0.9087 35 1 6.3945 2.6952 -0.0228 36 1 6.1186 1.1812 0.8712 37 1 4.5166 -3.1382 -0.5102 38 1 4.0960 -2.4467 1.0751 39 1 4.4173 -4.1907 0.9218 40 1 2.8097 -5.5449 -0.4635 41 1 1.1428 -4.9252 -0.5378 42 1 0.6368 -7.1314 0.5057 43 1 1.8516 -7.6823 1.7399 44 1 -0.7872 -6.6945 2.4530 45 1 0.6507 -6.5504 3.5553 46 1 -3.1244 -2.6706 2.4353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085857139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:52 Heat of formation + Delta-G solvation = 79.493759 kcal Electronic energy + Delta-G solvation = -28581.728287 eV Core-core repulsion = 24828.737143 eV Total energy + Delta-G solvation = -3752.991144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18764 -40.48251 -39.31594 -37.68904 -36.27099 -34.14610 -32.27149 -30.79897 -30.02554 -29.26815 -28.68873 -27.44159 -27.01830 -25.01984 -24.38666 -22.99450 -21.88578 -20.60894 -19.48131 -19.23974 -18.91038 -17.59088 -17.51876 -17.18938 -16.82844 -16.50208 -16.19580 -15.62132 -15.52880 -15.28149 -14.98953 -14.71883 -14.63826 -14.29100 -14.17885 -13.81245 -13.73690 -13.54095 -13.47947 -13.30658 -13.08334 -12.99803 -12.90032 -12.81282 -12.67834 -12.52061 -12.17224 -12.02666 -11.90676 -11.49065 -11.32834 -10.82165 -10.70622 -10.50857 -10.31997 -10.01541 -9.43838 -8.64067 -8.48314 -7.92943 -5.24078 -0.36391 0.18488 0.68456 1.29349 1.39508 1.49130 1.69771 1.85993 2.23149 2.55892 2.57644 3.10981 3.42916 3.48054 3.85048 3.95610 4.16043 4.22210 4.23758 4.29677 4.38786 4.43708 4.43953 4.54398 4.59773 4.67894 4.69877 4.74332 4.76876 4.79210 4.81111 4.81774 4.89692 4.90399 4.95523 5.04990 5.13616 5.38321 5.55676 5.76193 5.82262 5.85580 5.91677 6.41022 6.61211 6.82215 6.94111 7.58732 7.71307 8.52057 9.29810 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.004096 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.404553 B = 6834.101968 C = 8047.465280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.185 3.815 3 N -0.585 5.585 4 C 0.278 3.722 5 N -0.577 5.577 6 C 0.095 3.905 7 C 0.077 3.923 8 S 0.229 5.771 9 C -0.376 4.376 10 C 0.571 3.429 11 O -0.516 6.516 12 N -0.617 5.617 13 C 0.067 3.933 14 C 0.126 3.874 15 C 0.125 3.875 16 H 0.072 0.928 17 C -0.120 4.120 18 C 0.085 3.915 19 N -0.646 5.646 20 C -0.150 4.150 21 H 0.047 0.953 22 C -0.036 4.036 23 N -0.965 5.965 24 Si 0.942 3.058 25 H -0.288 1.288 26 H -0.322 1.322 27 H -0.260 1.260 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.023 0.977 45 H 0.057 0.943 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.048 3.517 -7.272 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.046 3.954 3 N -0.312 5.312 4 C -0.088 4.088 5 N -0.294 5.294 6 C -0.050 4.050 7 C -0.064 4.064 8 S 0.481 5.519 9 C -0.501 4.501 10 C 0.359 3.641 11 O -0.392 6.392 12 N -0.351 5.351 13 C -0.078 4.078 14 C 0.003 3.997 15 C 0.019 3.981 16 H 0.090 0.910 17 C -0.158 4.158 18 C -0.039 4.039 19 N -0.375 5.375 20 C -0.279 4.279 21 H 0.065 0.935 22 C -0.228 4.228 23 N -0.615 5.615 24 Si 0.775 3.225 25 H -0.216 1.216 26 H -0.252 1.252 27 H -0.185 1.185 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 25.158 3.872 -7.346 26.493 hybrid contribution -2.641 0.007 0.354 2.665 sum 22.517 3.878 -6.992 23.895 Atomic orbital electron populations 1.20334 0.87641 1.03039 1.02155 1.20372 0.97364 0.85696 0.91945 1.66027 1.03968 1.31751 1.29496 1.24739 0.91248 0.96712 0.96137 1.46116 1.04851 1.03172 1.75279 1.21861 1.01182 0.79732 1.02189 1.22242 0.75761 1.05386 1.03054 1.83207 1.02802 0.93496 1.72358 1.25171 0.97068 0.98158 1.29752 1.16938 0.85812 0.83377 0.77973 1.90993 1.15500 1.84505 1.48239 1.47473 1.09262 1.05673 1.72711 1.22045 0.80244 1.03179 1.02302 1.21712 0.99848 0.81133 0.97022 1.23041 0.89763 0.91606 0.93687 0.91025 1.23418 0.98111 0.96256 0.98055 1.23071 0.97610 0.85718 0.97467 1.46550 1.22953 1.06571 1.61397 1.18142 0.88187 0.82939 1.38626 0.93507 1.25614 0.97499 0.98027 1.01678 1.69899 1.07219 1.28278 1.56079 0.85836 0.76905 0.81550 0.78221 1.21606 1.25222 1.18491 0.92734 0.90428 0.90469 0.92770 0.87396 0.92510 0.90665 0.86069 0.91115 0.90071 0.91893 0.86734 0.86376 0.93020 0.90596 0.87311 0.95875 0.92516 0.94224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.37 9.80 71.23 0.70 -2.68 16 2 C 0.19 7.83 6.83 42.34 0.29 8.12 16 3 N -0.59 -21.66 9.71 -188.52 -1.83 -23.49 16 4 C 0.28 7.94 7.72 179.42 1.38 9.32 16 5 N -0.58 -11.25 3.36 -761.38 -2.56 -13.80 16 6 C 0.09 1.56 10.51 127.77 1.34 2.90 16 7 C 0.08 0.72 9.98 127.77 1.27 1.99 16 8 S 0.23 5.82 17.19 -56.49 -0.97 4.85 16 9 C -0.38 -14.80 6.22 23.99 0.15 -14.65 16 10 C 0.57 25.24 6.33 86.31 0.55 25.79 16 11 O -0.52 -28.39 10.43 -4.53 -0.05 -28.44 16 12 N -0.62 -21.26 2.88 -852.01 -2.45 -23.71 16 13 C 0.07 1.49 8.87 127.77 1.13 2.62 16 14 C 0.13 4.19 5.30 86.38 0.46 4.65 16 15 C 0.13 4.44 4.52 45.10 0.20 4.64 16 16 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.12 -3.71 7.86 31.25 0.25 -3.47 16 18 C 0.09 3.53 7.63 86.44 0.66 4.19 16 19 N -0.65 -31.78 3.12 -690.87 -2.16 -33.94 16 20 C -0.15 -9.14 8.07 84.03 0.68 -8.46 16 21 H 0.05 3.22 6.25 -2.91 -0.02 3.20 16 22 C -0.04 -2.31 5.50 84.86 0.47 -1.85 16 23 N -0.97 -66.64 13.97 21.65 0.30 -66.33 16 24 Si 0.94 52.35 24.89 68.60 1.71 54.05 16 25 H -0.29 -15.37 7.05 99.48 0.70 -14.67 16 26 H -0.32 -18.52 7.11 99.48 0.71 -17.81 16 27 H -0.26 -13.59 6.83 99.48 0.68 -12.91 16 28 H 0.05 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.08 4.00 5.90 -2.38 -0.01 3.99 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.11 0.91 7.92 -2.39 -0.02 0.89 16 33 H 0.06 1.24 7.59 -2.39 -0.02 1.22 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.12 0.37 7.80 -2.38 -0.02 0.35 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 1.39 7.54 -2.39 -0.02 1.37 16 38 H 0.06 1.53 5.12 -17.59 -0.09 1.43 16 39 H 0.11 1.85 8.03 -2.39 -0.02 1.83 16 40 H 0.12 2.64 8.12 -2.39 -0.02 2.62 16 41 H 0.05 2.17 7.29 -2.39 -0.02 2.15 16 42 H 0.08 2.43 8.10 -2.39 -0.02 2.41 16 43 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.02 1.05 4.08 -2.39 -0.01 1.04 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.25 16.63 8.31 -92.71 -0.77 15.86 16 Total: -1.00 -92.42 368.83 2.41 -90.01 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.88 Total: 7.68 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 9.53 Total: 33.11 kcal Atomic # 7 Polarization: -152.58 SS G_CDS: -8.69 Total: -161.27 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 1.71 Total: 54.05 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -0.97 Total: 4.85 kcal Total: -92.42 2.41 -90.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085857139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.504 kcal (2) G-P(sol) polarization free energy of solvation -92.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds