Wall clock time and date at job start Tue Mar 31 2020 21:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31238 * 124.05646 * 2 1 4 4 N 1.27332 * 120.03903 * 179.97438 * 3 2 1 5 5 S 1.56638 * 109.74139 * 0.02562 * 4 3 2 6 6 C 1.38246 * 124.05413 * 179.70050 * 2 1 3 7 7 C 1.47169 * 128.47621 * 0.02562 * 6 2 1 8 8 O 1.21623 * 120.00374 * 359.97438 * 7 6 2 9 9 N 1.34784 * 119.99928 * 179.97438 * 7 6 2 10 10 C 1.46499 * 119.99608 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.49615 * 325.05415 * 10 9 7 12 12 C 1.50880 * 109.48711 * 85.12301 * 10 9 7 13 13 C 1.53977 * 110.10733 * 211.83976 * 12 10 9 14 14 N 1.47606 * 112.12396 * 319.45617 * 13 12 10 15 15 C 1.36940 * 118.64057 * 137.86068 * 14 13 12 16 16 H 1.07997 * 119.99807 * 205.98025 * 15 14 13 17 17 C 1.38809 * 120.00283 * 25.97681 * 15 14 13 18 18 N 1.31617 * 119.99836 * 17.70920 * 17 15 14 19 19 Si 1.86801 * 120.00372 * 197.71047 * 17 15 14 20 20 H 1.48501 * 109.47328 * 94.06099 * 19 17 15 21 21 H 1.48491 * 109.47292 * 214.06648 * 19 17 15 22 22 H 1.48510 * 109.46792 * 334.06526 * 19 17 15 23 23 C 1.44574 * 122.71726 * 317.83946 * 14 13 12 24 24 C 1.54856 * 109.60102 * 90.74352 * 23 14 13 25 25 C 1.53001 * 109.33044 * 168.47265 * 24 23 14 26 26 C 1.52997 * 109.33123 * 48.99953 * 24 23 14 27 27 C 1.47093 * 110.32511 * 288.73349 * 24 23 14 28 28 H 1.08994 * 109.47100 * 90.02540 * 1 2 3 29 29 H 1.09000 * 109.47446 * 330.02304 * 1 2 3 30 30 H 1.08997 * 109.47085 * 210.02158 * 1 2 3 31 31 H 0.96997 * 119.99722 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.36731 * 332.04016 * 12 10 9 33 33 H 1.09002 * 109.36847 * 91.65405 * 12 10 9 34 34 H 1.09007 * 108.96468 * 198.77596 * 13 12 10 35 35 H 1.08993 * 108.87974 * 80.08774 * 13 12 10 36 36 H 0.97009 * 119.99970 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.44693 * 330.70762 * 23 14 13 38 38 H 1.08998 * 109.45300 * 210.78468 * 23 14 13 39 39 H 1.08998 * 109.47818 * 180.86706 * 25 24 23 40 40 H 1.08997 * 109.47190 * 300.87094 * 25 24 23 41 41 H 1.09007 * 109.47003 * 60.87177 * 25 24 23 42 42 H 1.09001 * 109.46744 * 299.13104 * 26 24 23 43 43 H 1.08999 * 109.47330 * 59.12655 * 26 24 23 44 44 H 1.09000 * 109.47564 * 179.13257 * 26 24 23 45 45 H 1.08995 * 108.51412 * 301.55521 * 27 24 23 46 46 H 1.08998 * 108.39373 * 183.96632 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9981 0.0005 5 16 3.9366 -0.5097 0.0004 6 6 2.2811 -1.1454 0.0060 7 6 1.8393 -2.5492 0.0128 8 8 0.6521 -2.8131 0.0142 9 7 2.7504 -3.5424 0.0176 10 6 2.3106 -4.9398 0.0249 11 1 1.3982 -5.0308 0.6143 12 6 2.0436 -5.3908 -1.3899 13 6 0.9106 -6.4335 -1.4082 14 7 1.0152 -7.3877 -0.2869 15 6 -0.1262 -7.7434 0.3809 16 1 -0.0706 -8.0720 1.4081 17 6 -1.3546 -7.6816 -0.2625 18 7 -1.4072 -7.6262 -1.5765 19 14 -2.9331 -7.6772 0.7364 20 1 -3.3642 -6.2762 0.9747 21 1 -3.9932 -8.4012 -0.0099 22 1 -2.6966 -8.3506 2.0387 23 6 2.2728 -7.9626 0.1352 24 6 2.9121 -7.0692 1.2265 25 6 4.0820 -7.8156 1.8709 26 6 1.8670 -6.7521 2.2980 27 6 3.4014 -5.8136 0.6369 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3634 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 3.6973 -3.3319 0.0169 32 1 1.7538 -4.5316 -1.9946 33 1 2.9489 -5.8338 -1.8050 34 1 0.9521 -6.9852 -2.3474 35 1 -0.0463 -5.9156 -1.3442 36 1 -2.2657 -7.5826 -2.0261 37 1 2.9461 -8.0298 -0.7193 38 1 2.0986 -8.9601 0.5388 39 1 4.5243 -7.1949 2.6501 40 1 3.7221 -8.7467 2.3086 41 1 4.8334 -8.0371 1.1128 42 1 1.0346 -6.2133 1.8453 43 1 1.5028 -7.6812 2.7365 44 1 2.3188 -6.1360 3.0753 45 1 4.1272 -6.0555 -0.1394 46 1 3.9065 -5.2419 1.4154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089315621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:38 Heat of formation + Delta-G solvation = 56.854083 kcal Electronic energy + Delta-G solvation = -28627.780955 eV Core-core repulsion = 24873.808080 eV Total energy + Delta-G solvation = -3753.972875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.14494 -39.98214 -38.47467 -34.95443 -34.41577 -33.41794 -31.69787 -30.64171 -28.54573 -27.40849 -27.07742 -26.73463 -25.49648 -24.06528 -22.99698 -21.65952 -20.46159 -19.60016 -18.66915 -18.24327 -17.29151 -16.68391 -16.26786 -15.95586 -15.02551 -14.91353 -14.51200 -14.32447 -14.08807 -13.93105 -13.66508 -13.32927 -13.20754 -13.11682 -12.88438 -12.58097 -12.34153 -12.04696 -11.72566 -11.62942 -11.39924 -11.32275 -11.10805 -11.03013 -10.76627 -10.62445 -10.51620 -10.36219 -10.15860 -10.03788 -9.92784 -9.90417 -9.83841 -9.73571 -9.62503 -9.50138 -8.90670 -8.33149 -6.64083 -5.74400 -3.16601 -0.45389 0.60475 1.25245 1.76898 2.99539 3.02165 3.42738 3.49645 3.50988 3.70101 4.40068 4.54757 4.64125 5.01275 5.14643 5.17070 5.40917 5.45449 5.48571 5.52500 5.60033 5.65245 5.87706 5.93973 6.04029 6.08876 6.12011 6.17739 6.19827 6.26913 6.35800 6.43550 6.49495 6.59374 6.69905 6.76889 6.81170 6.86988 7.03337 7.26930 7.37527 7.43570 7.53032 7.72197 7.89314 8.14433 8.50819 9.27462 9.94737 10.38821 11.33263 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.003989 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.065708 B = 7017.544736 C = 8417.246585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.098 3.902 3 N -0.250 5.250 4 N -0.257 5.257 5 S 0.402 5.598 6 C -0.281 4.281 7 C 0.594 3.406 8 O -0.497 6.497 9 N -0.717 5.717 10 C 0.150 3.850 11 H 0.115 0.885 12 C -0.149 4.149 13 C 0.182 3.818 14 N -0.587 5.587 15 C -0.259 4.259 16 H 0.071 0.929 17 C 0.008 3.992 18 N -0.901 5.901 19 Si 0.894 3.106 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.279 1.279 23 C 0.169 3.831 24 C -0.093 4.093 25 C -0.133 4.133 26 C -0.131 4.131 27 C -0.098 4.098 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.390 0.610 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.027 0.973 35 H 0.078 0.922 36 H 0.252 0.748 37 H 0.031 0.969 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.729 10.216 3.361 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 N -0.117 5.117 4 N -0.237 5.237 5 S 0.538 5.462 6 C -0.422 4.422 7 C 0.376 3.624 8 O -0.372 6.372 9 N -0.367 5.367 10 C 0.047 3.953 11 H 0.133 0.867 12 C -0.189 4.189 13 C 0.057 3.943 14 N -0.308 5.308 15 C -0.389 4.389 16 H 0.088 0.912 17 C -0.191 4.191 18 N -0.545 5.545 19 Si 0.724 3.276 20 H -0.214 1.214 21 H -0.220 1.220 22 H -0.205 1.205 23 C 0.040 3.960 24 C -0.096 4.096 25 C -0.191 4.191 26 C -0.188 4.188 27 C -0.136 4.136 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.223 0.777 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.074 0.926 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.338 11.126 3.215 17.664 hybrid contribution -1.487 -0.322 0.382 1.568 sum 11.851 10.804 3.597 16.435 Atomic orbital electron populations 1.20566 0.83582 1.05150 1.04579 1.22987 1.00311 0.85004 0.96508 1.70607 0.96920 1.28099 1.16041 1.78876 1.09494 1.15526 1.19835 1.82460 1.10401 1.01762 1.51615 1.27970 0.97617 1.00484 1.16088 1.16443 0.86374 0.81685 0.77905 1.90905 1.15474 1.82555 1.48237 1.46243 1.08520 1.07272 1.74698 1.20777 0.99666 0.76282 0.98526 0.86738 1.22477 1.01106 1.00308 0.94967 1.20947 0.95258 0.88309 0.89816 1.43649 1.02344 1.47651 1.37107 1.19274 0.84675 1.40744 0.94196 0.91182 1.24982 0.98156 1.00855 0.95072 1.70074 1.24131 1.53801 1.06460 0.86408 0.83875 0.77754 0.79554 1.21363 1.21961 1.20463 1.20713 0.87911 0.94082 0.93304 1.20459 0.95423 0.95671 0.98080 1.21804 0.97607 1.00087 0.99630 1.21934 0.99435 1.00958 0.96513 1.20616 0.97057 0.96412 0.99484 0.89186 0.89964 0.87713 0.77696 0.92566 0.93391 0.95531 0.90397 0.93769 0.95053 0.93471 0.93744 0.92759 0.93380 0.89952 0.93336 0.95475 0.92595 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.90 36.00 0.36 -0.53 16 2 C 0.10 1.25 7.00 -82.84 -0.58 0.67 16 3 N -0.25 -3.32 11.54 33.42 0.39 -2.93 16 4 N -0.26 -3.16 12.51 60.35 0.75 -2.40 16 5 S 0.40 3.82 23.05 -107.50 -2.48 1.34 16 6 C -0.28 -3.49 6.81 -35.95 -0.24 -3.73 16 7 C 0.59 8.79 7.62 -12.63 -0.10 8.69 16 8 O -0.50 -9.30 14.55 5.26 0.08 -9.23 16 9 N -0.72 -9.45 4.93 -56.22 -0.28 -9.73 16 10 C 0.15 2.41 1.98 -69.21 -0.14 2.27 16 11 H 0.11 2.30 4.73 -51.93 -0.25 2.05 16 12 C -0.15 -2.65 5.39 -27.29 -0.15 -2.79 16 13 C 0.18 4.15 4.68 -2.93 -0.01 4.14 16 14 N -0.59 -13.38 1.86 -172.08 -0.32 -13.70 16 15 C -0.26 -6.64 7.65 -15.06 -0.12 -6.76 16 16 H 0.07 1.77 6.42 -52.49 -0.34 1.44 16 17 C 0.01 0.22 4.82 -17.43 -0.08 0.14 16 18 N -0.90 -25.57 11.11 55.49 0.62 -24.95 16 19 Si 0.89 21.61 29.59 -169.99 -5.03 16.58 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.17 3.20 4.70 -4.09 -0.02 3.18 16 24 C -0.09 -1.44 0.71 -156.37 -0.11 -1.55 16 25 C -0.13 -1.71 8.37 37.16 0.31 -1.40 16 26 C -0.13 -2.25 6.76 37.16 0.25 -2.00 16 27 C -0.10 -1.37 3.40 -29.78 -0.10 -1.47 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.34 6.45 -51.93 -0.34 1.01 16 31 H 0.39 3.84 8.03 -40.82 -0.33 3.51 16 32 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 33 H 0.05 0.78 7.32 -51.93 -0.38 0.40 16 34 H 0.03 0.66 8.04 -51.92 -0.42 0.25 16 35 H 0.08 2.06 6.36 -51.93 -0.33 1.73 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.05 0.94 7.95 -51.93 -0.41 0.52 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.08 1.67 4.48 -51.93 -0.23 1.44 16 43 H 0.05 0.85 7.50 -51.93 -0.39 0.47 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.73 7.36 -51.93 -0.38 0.34 16 46 H 0.05 0.62 8.00 -51.93 -0.42 0.21 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -29.90 365.95 -8.19 -38.09 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.70 Total: 2.55 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.73 Total: -1.15 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 1.16 Total: -53.71 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.48 Total: 1.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.90 -8.19 -38.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089315621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.948 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds