Wall clock time and date at job start Tue Mar 31 2020 21:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.55457 * 2 1 4 4 N 1.46495 * 109.46922 * 304.87757 * 3 2 1 5 5 C 1.34782 * 119.99922 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99986 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.46671 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46841 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47357 * 179.97438 * 9 8 7 11 11 F 1.39910 * 109.46947 * 59.99823 * 10 9 8 12 12 F 1.39900 * 109.47341 * 179.97438 * 10 9 8 13 13 F 1.39901 * 109.47023 * 299.99978 * 10 9 8 14 14 C 1.53297 * 109.51474 * 120.12848 * 2 1 3 15 15 N 1.47149 * 108.38367 * 67.62124 * 14 2 1 16 16 C 1.36939 * 120.98120 * 230.55672 * 15 14 2 17 17 H 1.08001 * 119.99552 * 153.30577 * 16 15 14 18 18 C 1.38813 * 120.00119 * 333.30436 * 16 15 14 19 19 N 1.31618 * 119.99580 * 343.55205 * 18 16 15 20 20 Si 1.86796 * 119.99837 * 163.55336 * 18 16 15 21 21 H 1.48500 * 109.47155 * 90.00141 * 20 18 16 22 22 H 1.48503 * 109.47042 * 209.99744 * 20 18 16 23 23 H 1.48502 * 109.47247 * 329.99983 * 20 18 16 24 24 C 1.47151 * 118.03345 * 50.53743 * 15 14 2 25 25 C 1.53288 * 108.38873 * 309.46127 * 24 15 14 26 26 O 1.42962 * 109.51489 * 239.87662 * 2 1 3 27 27 H 1.09001 * 109.47240 * 180.12515 * 1 2 3 28 28 H 1.09004 * 109.47239 * 300.12331 * 1 2 3 29 29 H 1.08997 * 109.47556 * 60.12398 * 1 2 3 30 30 H 1.09004 * 109.46913 * 64.87110 * 3 2 1 31 31 H 1.08995 * 109.47168 * 184.87480 * 3 2 1 32 32 H 0.96995 * 120.00598 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.47358 * 299.99579 * 7 5 4 34 34 H 1.08995 * 109.47046 * 60.00134 * 7 5 4 35 35 H 1.09004 * 109.47177 * 299.99746 * 8 7 5 36 36 H 1.08992 * 109.47667 * 60.00072 * 8 7 5 37 37 H 1.09004 * 109.46661 * 299.99613 * 9 8 7 38 38 H 1.09004 * 109.47326 * 59.99758 * 9 8 7 39 39 H 1.09000 * 109.67939 * 187.34795 * 14 2 1 40 40 H 1.08998 * 109.67890 * 307.85956 * 14 2 1 41 41 H 0.97005 * 119.99361 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.67871 * 189.73706 * 24 15 14 43 43 H 1.09002 * 109.68254 * 69.19321 * 24 15 14 44 44 H 1.08999 * 109.51584 * 172.22696 * 25 24 15 45 45 H 1.09004 * 109.51249 * 292.33325 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4612 2.1663 -1.1331 5 6 1.7724 3.4619 -1.3355 6 8 2.5329 4.0282 -0.5792 7 6 1.1754 4.2071 -2.5014 8 6 1.6874 5.6488 -2.5013 9 6 1.0808 6.4055 -3.6846 10 6 1.5923 7.8475 -3.6842 11 9 2.9869 7.8477 -3.7961 12 9 1.0381 8.5392 -4.7666 13 9 1.2201 8.4740 -2.4900 14 6 2.0420 -0.7253 1.2497 15 7 1.6959 -2.1507 1.1335 16 6 1.0608 -2.8073 2.1537 17 1 0.4416 -3.6661 1.9402 18 6 1.2129 -2.3692 3.4620 19 7 2.1957 -1.5504 3.7717 20 14 0.0227 -2.9419 4.7830 21 1 0.5353 -4.1897 5.4038 22 1 -0.1072 -1.8891 5.8223 23 1 -1.3060 -3.2021 4.1730 24 6 2.0521 -2.8497 -0.1115 25 6 1.5396 -2.0210 -1.2948 26 8 2.0075 -0.6763 -1.1655 27 1 -0.3634 -1.0277 0.0022 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5119 -0.8910 30 1 1.7524 1.9302 0.9304 31 1 3.1285 1.4415 -0.0873 32 1 0.8533 1.7134 -1.7382 33 1 1.4650 3.7184 -3.4316 34 1 0.0889 4.2077 -2.4142 35 1 1.3974 6.1373 -1.5710 36 1 2.7739 5.6486 -2.5882 37 1 1.3705 5.9172 -4.6151 38 1 -0.0057 6.4058 -3.5973 39 1 3.1241 -0.6147 1.3207 40 1 1.5709 -0.3037 2.1376 41 1 2.3017 -1.2440 4.6860 42 1 1.5873 -3.8355 -0.1249 43 1 3.1352 -2.9532 -0.1774 44 1 1.9113 -2.4478 -2.2264 45 1 0.4496 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108236516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:41 Heat of formation + Delta-G solvation = -226.729496 kcal Electronic energy + Delta-G solvation = -29947.766617 eV Core-core repulsion = 25164.594273 eV Total energy + Delta-G solvation = -4783.172344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.38220 -47.89718 -47.84360 -39.89783 -38.86032 -35.47437 -34.84527 -34.35993 -31.86949 -31.29409 -29.94064 -27.99468 -26.61024 -25.80016 -24.27788 -23.26902 -22.15633 -21.20039 -20.29219 -18.84671 -18.77797 -18.57931 -17.93798 -17.12156 -16.71069 -16.22941 -15.88116 -15.44567 -15.13717 -14.84441 -14.78220 -14.39464 -14.33463 -14.23689 -14.06442 -14.01820 -13.97980 -13.81710 -13.54907 -13.13780 -13.01258 -12.95066 -12.68010 -12.30216 -12.13496 -11.90024 -11.75595 -11.63334 -11.23303 -11.21712 -11.05221 -10.85574 -10.69806 -10.35804 -10.30139 -10.04603 -9.81763 -9.57102 -9.08464 -8.87160 -8.57597 -6.77287 -5.88274 -3.32142 2.44634 2.70734 3.20255 3.31166 3.38606 3.39708 3.51928 3.72618 3.73795 4.20461 4.40249 4.46978 4.53691 4.67316 4.96597 4.99902 5.03125 5.12136 5.27498 5.30865 5.43770 5.48254 5.62284 5.64138 5.85181 5.87187 5.89525 5.97999 6.05527 6.09570 6.26993 6.40866 6.53578 6.64416 6.71368 6.78223 7.02951 7.42675 7.61871 7.67150 7.83792 8.29265 8.31643 9.07104 9.70100 10.27383 11.19772 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002066 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.508606 B =13551.152108 C =14164.889199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.718 5.718 5 C 0.507 3.493 6 O -0.544 6.544 7 C -0.137 4.137 8 C -0.111 4.111 9 C -0.167 4.167 10 C 0.452 3.548 11 F -0.183 7.183 12 F -0.188 7.188 13 F -0.183 7.183 14 C 0.160 3.840 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.029 0.971 40 H 0.096 0.904 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 13.258 -17.208 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.370 5.370 5 C 0.293 3.707 6 O -0.422 6.422 7 C -0.177 4.177 8 C -0.148 4.148 9 C -0.205 4.205 10 C 0.398 3.602 11 F -0.164 7.164 12 F -0.169 7.169 13 F -0.164 7.164 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.213 1.213 22 H -0.214 1.214 23 H -0.205 1.205 24 C -0.018 4.018 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.263 13.819 -16.594 22.011 hybrid contribution -0.912 -0.515 0.618 1.216 sum -5.175 13.304 -15.976 21.425 Atomic orbital electron populations 1.22198 0.95794 1.03267 1.00620 1.22548 0.93534 0.90698 0.89526 1.21346 0.98826 0.89449 0.88880 1.46049 1.48975 1.11049 1.30909 1.20512 0.81697 0.82129 0.86393 1.90729 1.36115 1.67826 1.47480 1.21579 1.02276 0.95513 0.98349 1.21341 1.02265 0.94034 0.97207 1.22925 1.04287 0.89456 1.03820 1.20610 0.75744 0.90550 0.73344 1.93201 1.30455 1.97042 1.95727 1.93186 1.85366 1.82322 1.56065 1.93199 1.91209 1.84956 1.47053 1.21290 0.97853 0.83958 0.93614 1.43992 1.68616 1.04952 1.13860 1.19138 1.21406 1.12580 0.85314 0.91460 1.25056 0.97258 1.00050 0.97148 1.70011 1.29180 1.36790 1.18543 0.86299 0.80924 0.77968 0.81587 1.21308 1.21445 1.20470 1.21600 0.97563 0.95228 0.87377 1.23033 0.98272 0.83137 0.98730 1.87821 1.72930 1.25818 1.43823 0.90777 0.91872 0.94000 0.90018 0.90848 0.76332 0.88514 0.88585 0.89613 0.89603 0.87129 0.87143 0.95252 0.88577 0.93395 0.92046 0.95658 0.90205 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 7.86 37.15 0.29 -2.31 16 2 C 0.08 1.39 0.78 -90.47 -0.07 1.32 16 3 C 0.14 2.28 4.85 -4.04 -0.02 2.26 16 4 N -0.72 -9.31 5.19 -60.29 -0.31 -9.62 16 5 C 0.51 6.50 7.83 -10.98 -0.09 6.41 16 6 O -0.54 -9.32 15.98 5.56 0.09 -9.23 16 7 C -0.14 -1.04 5.70 -27.88 -0.16 -1.20 16 8 C -0.11 -0.89 4.26 -26.73 -0.11 -1.00 16 9 C -0.17 -0.91 5.26 -26.73 -0.14 -1.05 16 10 C 0.45 3.63 3.16 37.16 0.12 3.74 16 11 F -0.18 -1.75 16.80 2.25 0.04 -1.71 16 12 F -0.19 -1.58 17.32 2.25 0.04 -1.54 16 13 F -0.18 -1.75 16.80 2.25 0.04 -1.71 16 14 C 0.16 3.63 4.11 -3.53 -0.01 3.62 16 15 N -0.59 -14.08 2.56 -171.83 -0.44 -14.52 16 16 C -0.26 -6.67 9.65 -15.06 -0.15 -6.81 16 17 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 18 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 19 N -0.90 -25.37 11.14 55.49 0.62 -24.75 16 20 Si 0.90 20.96 29.58 -169.99 -5.03 15.93 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.11 2.17 6.73 -3.54 -0.02 2.15 16 25 C 0.05 0.77 6.60 37.31 0.25 1.01 16 26 O -0.38 -6.79 10.17 -35.23 -0.36 -7.14 16 27 H 0.07 1.33 6.11 -51.93 -0.32 1.01 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.54 6.59 -51.93 -0.34 0.20 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.40 4.36 7.00 -40.82 -0.29 4.08 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.81 7.76 -51.93 -0.40 0.41 16 36 H 0.09 0.82 7.76 -51.93 -0.40 0.41 16 37 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 2.42 6.16 -51.93 -0.32 2.10 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.76 6.26 -51.93 -0.32 0.44 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -31.48 371.82 -6.51 -37.99 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.59 Total: 2.55 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.20 Total: 8.15 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.14 Total: -48.89 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.27 Total: -16.38 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.11 Total: -4.96 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.48 -6.51 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108236516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.741 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds