Wall clock time and date at job start Tue Mar 31 2020 21:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.55457 * 2 1 4 4 N 1.46495 * 109.46922 * 304.87757 * 3 2 1 5 5 C 1.34782 * 119.99922 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99986 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.46671 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46841 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47357 * 179.97438 * 9 8 7 11 11 F 1.39910 * 109.46947 * 59.99823 * 10 9 8 12 12 F 1.39900 * 109.47341 * 179.97438 * 10 9 8 13 13 F 1.39901 * 109.47023 * 299.99978 * 10 9 8 14 14 C 1.53297 * 109.51474 * 120.12848 * 2 1 3 15 15 N 1.47149 * 108.38367 * 67.62124 * 14 2 1 16 16 C 1.36939 * 120.98120 * 230.55672 * 15 14 2 17 17 H 1.08001 * 119.99552 * 153.30577 * 16 15 14 18 18 C 1.38813 * 120.00119 * 333.30436 * 16 15 14 19 19 N 1.31618 * 119.99580 * 343.55205 * 18 16 15 20 20 Si 1.86796 * 119.99837 * 163.55336 * 18 16 15 21 21 H 1.48500 * 109.47155 * 90.00141 * 20 18 16 22 22 H 1.48503 * 109.47042 * 209.99744 * 20 18 16 23 23 H 1.48502 * 109.47247 * 329.99983 * 20 18 16 24 24 C 1.47151 * 118.03345 * 50.53743 * 15 14 2 25 25 C 1.53288 * 108.38873 * 309.46127 * 24 15 14 26 26 O 1.42962 * 109.51489 * 239.87662 * 2 1 3 27 27 H 1.09001 * 109.47240 * 180.12515 * 1 2 3 28 28 H 1.09004 * 109.47239 * 300.12331 * 1 2 3 29 29 H 1.08997 * 109.47556 * 60.12398 * 1 2 3 30 30 H 1.09004 * 109.46913 * 64.87110 * 3 2 1 31 31 H 1.08995 * 109.47168 * 184.87480 * 3 2 1 32 32 H 0.96995 * 120.00598 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.47358 * 299.99579 * 7 5 4 34 34 H 1.08995 * 109.47046 * 60.00134 * 7 5 4 35 35 H 1.09004 * 109.47177 * 299.99746 * 8 7 5 36 36 H 1.08992 * 109.47667 * 60.00072 * 8 7 5 37 37 H 1.09004 * 109.46661 * 299.99613 * 9 8 7 38 38 H 1.09004 * 109.47326 * 59.99758 * 9 8 7 39 39 H 1.09000 * 109.67939 * 187.34795 * 14 2 1 40 40 H 1.08998 * 109.67890 * 307.85956 * 14 2 1 41 41 H 0.97005 * 119.99361 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.67871 * 189.73706 * 24 15 14 43 43 H 1.09002 * 109.68254 * 69.19321 * 24 15 14 44 44 H 1.08999 * 109.51584 * 172.22696 * 25 24 15 45 45 H 1.09004 * 109.51249 * 292.33325 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4612 2.1663 -1.1331 5 6 1.7724 3.4619 -1.3355 6 8 2.5329 4.0282 -0.5792 7 6 1.1754 4.2071 -2.5014 8 6 1.6874 5.6488 -2.5013 9 6 1.0808 6.4055 -3.6846 10 6 1.5923 7.8475 -3.6842 11 9 2.9869 7.8477 -3.7961 12 9 1.0381 8.5392 -4.7666 13 9 1.2201 8.4740 -2.4900 14 6 2.0420 -0.7253 1.2497 15 7 1.6959 -2.1507 1.1335 16 6 1.0608 -2.8073 2.1537 17 1 0.4416 -3.6661 1.9402 18 6 1.2129 -2.3692 3.4620 19 7 2.1957 -1.5504 3.7717 20 14 0.0227 -2.9419 4.7830 21 1 0.5353 -4.1897 5.4038 22 1 -0.1072 -1.8891 5.8223 23 1 -1.3060 -3.2021 4.1730 24 6 2.0521 -2.8497 -0.1115 25 6 1.5396 -2.0210 -1.2948 26 8 2.0075 -0.6763 -1.1655 27 1 -0.3634 -1.0277 0.0022 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5119 -0.8910 30 1 1.7524 1.9302 0.9304 31 1 3.1285 1.4415 -0.0873 32 1 0.8533 1.7134 -1.7382 33 1 1.4650 3.7184 -3.4316 34 1 0.0889 4.2077 -2.4142 35 1 1.3974 6.1373 -1.5710 36 1 2.7739 5.6486 -2.5882 37 1 1.3705 5.9172 -4.6151 38 1 -0.0057 6.4058 -3.5973 39 1 3.1241 -0.6147 1.3207 40 1 1.5709 -0.3037 2.1376 41 1 2.3017 -1.2440 4.6860 42 1 1.5873 -3.8355 -0.1249 43 1 3.1352 -2.9532 -0.1774 44 1 1.9113 -2.4478 -2.2264 45 1 0.4496 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108236516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:41 Heat of formation + Delta-G solvation = -247.664640 kcal Electronic energy + Delta-G solvation = -29948.674433 eV Core-core repulsion = 25164.594273 eV Total energy + Delta-G solvation = -4784.080160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.03172 -48.54098 -48.52982 -41.12880 -40.20124 -36.60340 -36.06179 -35.71445 -33.26727 -33.12909 -30.65715 -29.55263 -28.06173 -27.31268 -25.17999 -24.93563 -23.06304 -22.49141 -21.31599 -20.27603 -19.48916 -19.25244 -18.94379 -18.67546 -17.67506 -17.42443 -16.95687 -16.82341 -16.57004 -16.06351 -15.71553 -15.57271 -15.45531 -15.28364 -15.13450 -15.02577 -14.93220 -14.69213 -14.68602 -14.63388 -14.35333 -13.96212 -13.64215 -13.43528 -13.18626 -12.93438 -12.91531 -12.78814 -12.76475 -12.52217 -12.41652 -12.34287 -12.16911 -11.93405 -11.83675 -11.78533 -11.14592 -10.90544 -10.71582 -10.48997 -10.06426 -8.70985 -7.89815 -5.37038 1.45580 1.47486 1.56646 1.71811 1.86360 2.23422 2.48489 2.80880 2.94910 3.10912 3.16831 3.25578 3.51689 3.74584 3.95078 4.01816 4.04496 4.08704 4.12674 4.36684 4.43998 4.48258 4.53037 4.59767 4.61198 4.67481 4.73161 4.76435 4.83390 4.98944 5.06303 5.07115 5.14341 5.22287 5.25123 5.38346 5.45582 5.54558 5.61720 6.29823 6.38808 6.63042 7.07084 7.33107 7.76523 8.30500 9.15797 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002066 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.508606 B =13551.152108 C =14164.889199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.095 3.905 3 C 0.149 3.851 4 N -0.707 5.707 5 C 0.501 3.499 6 O -0.595 6.595 7 C -0.124 4.124 8 C -0.111 4.111 9 C -0.153 4.153 10 C 0.444 3.556 11 F -0.196 7.196 12 F -0.190 7.190 13 F -0.196 7.196 14 C 0.166 3.834 15 N -0.607 5.607 16 C -0.258 4.258 17 H 0.074 0.926 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.265 1.265 24 C 0.100 3.900 25 C 0.054 3.946 26 O -0.385 6.385 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.416 0.584 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.138 0.862 39 H -0.011 1.011 40 H 0.065 0.935 41 H 0.250 0.750 42 H 0.072 0.928 43 H 0.010 0.990 44 H 0.118 0.882 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 12.925 -20.217 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.023 3.977 4 N -0.360 5.360 5 C 0.290 3.710 6 O -0.476 6.476 7 C -0.163 4.163 8 C -0.149 4.149 9 C -0.190 4.190 10 C 0.390 3.610 11 F -0.178 7.178 12 F -0.171 7.171 13 F -0.178 7.178 14 C 0.039 3.961 15 N -0.331 5.331 16 C -0.388 4.388 17 H 0.092 0.908 18 C -0.246 4.246 19 N -0.584 5.584 20 Si 0.794 3.206 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.190 1.190 24 C -0.025 4.025 25 C -0.024 4.024 26 O -0.304 6.304 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.254 0.746 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.007 0.993 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.028 0.972 44 H 0.136 0.864 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.876 13.463 -19.668 24.806 hybrid contribution -0.019 -0.443 1.528 1.591 sum -6.895 13.021 -18.140 23.369 Atomic orbital electron populations 1.22104 0.93722 1.02876 1.02269 1.22165 0.94802 0.90540 0.87151 1.20943 0.97631 0.89145 0.89950 1.45881 1.48959 1.11209 1.29959 1.21552 0.80699 0.81696 0.87083 1.90718 1.38464 1.68761 1.49657 1.21626 1.03850 0.94077 0.96764 1.21266 1.01226 0.94836 0.97584 1.22933 1.05560 0.86923 1.03629 1.21118 0.75192 0.91881 0.72763 1.93175 1.31722 1.97147 1.95748 1.93179 1.85283 1.82600 1.56062 1.93173 1.91245 1.85433 1.47925 1.21069 0.95267 0.84461 0.95296 1.44253 1.68606 1.05565 1.14696 1.19502 1.20904 1.12367 0.86013 0.90818 1.25815 0.98795 1.00758 0.99279 1.70188 1.31129 1.38609 1.18431 0.85294 0.79465 0.76970 0.78841 1.21371 1.22177 1.18979 1.21838 0.96950 0.96433 0.87283 1.23099 0.99179 0.81767 0.98340 1.87832 1.73299 1.26417 1.42848 0.92094 0.92740 0.89823 0.91484 0.93138 0.74558 0.85204 0.85034 0.91716 0.91791 0.84444 0.84405 0.99276 0.91622 0.94113 0.90978 0.97180 0.86432 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 7.86 71.98 0.57 -4.03 16 2 C 0.09 3.33 0.78 -10.69 -0.01 3.32 16 3 C 0.15 4.94 4.85 86.38 0.42 5.36 16 4 N -0.71 -16.91 5.19 -463.05 -2.40 -19.31 16 5 C 0.50 12.04 7.83 87.66 0.69 12.73 16 6 O -0.60 -20.74 15.98 -3.04 -0.05 -20.79 16 7 C -0.12 -1.40 5.70 29.85 0.17 -1.23 16 8 C -0.11 -1.56 4.26 30.60 0.13 -1.43 16 9 C -0.15 -1.15 5.26 30.59 0.16 -0.99 16 10 C 0.44 6.48 3.16 71.98 0.23 6.71 16 11 F -0.20 -3.66 16.80 44.97 0.76 -2.90 16 12 F -0.19 -2.85 17.32 44.97 0.78 -2.07 16 13 F -0.20 -3.65 16.80 44.97 0.76 -2.89 16 14 C 0.17 7.87 4.11 86.36 0.35 8.23 16 15 N -0.61 -29.32 2.56 -697.55 -1.79 -31.11 16 16 C -0.26 -13.58 9.65 84.03 0.81 -12.77 16 17 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 18 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 19 N -0.94 -55.11 11.14 21.65 0.24 -54.86 16 20 Si 0.97 43.72 29.58 68.60 2.03 45.75 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 C 0.10 3.93 6.73 86.35 0.58 4.51 16 25 C 0.05 1.61 6.60 72.08 0.48 2.08 16 26 O -0.38 -12.79 10.17 -148.98 -1.52 -14.30 16 27 H 0.06 2.03 6.11 -2.39 -0.01 2.02 16 28 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.08 1.81 6.59 -2.39 -0.02 1.80 16 30 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.42 7.36 7.00 -92.71 -0.65 6.71 16 33 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 1.19 7.76 -2.38 -0.02 1.17 16 36 H 0.06 1.18 7.76 -2.39 -0.02 1.16 16 37 H 0.14 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.14 0.35 8.14 -2.38 -0.02 0.33 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.07 3.50 6.16 -2.39 -0.01 3.49 16 41 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 42 H 0.07 2.63 7.96 -2.39 -0.02 2.61 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.06 1.76 6.26 -2.38 -0.01 1.74 16 Total: -1.00 -73.69 371.82 4.17 -69.52 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.37 Total: 12.86 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 4.99 Total: 20.11 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -3.95 Total: -105.28 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.56 Total: -35.09 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 2.29 Total: -7.87 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -73.69 4.17 -69.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108236516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.140 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds