Wall clock time and date at job start Tue Mar 31 2020 20:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38608 * 120.40064 * 2 1 4 4 C 1.38602 * 118.56196 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.40437 * 179.97438 * 4 3 2 6 6 N 1.32283 * 119.19484 * 359.97438 * 4 3 2 7 7 C 1.32494 * 120.73830 * 0.02562 * 6 4 3 8 8 N 1.38402 * 119.21202 * 179.97438 * 7 6 4 9 9 C 1.46498 * 120.00512 * 359.97438 * 8 7 6 10 10 C 1.46505 * 119.99815 * 180.02562 * 8 7 6 11 11 H 1.09002 * 109.47068 * 0.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 240.00008 * 10 8 7 13 13 C 1.53002 * 109.47411 * 120.00149 * 10 8 7 14 14 N 1.46503 * 109.46849 * 304.99988 * 13 10 8 15 15 C 1.34775 * 120.00100 * 179.97438 * 14 13 10 16 16 O 1.21281 * 119.99634 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00291 * 180.02562 * 15 14 13 18 18 S 1.80994 * 109.47094 * 180.02562 * 17 15 14 19 19 C 1.76209 * 99.99965 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99602 * 0.02562 * 19 18 17 21 21 C 1.38794 * 119.99888 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00417 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99803 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46783 * 59.99963 * 23 21 19 25 25 H 1.48500 * 109.47138 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47147 * 300.00578 * 23 21 19 27 27 N 1.32276 * 120.40376 * 180.24698 * 2 1 3 28 28 H 1.08999 * 109.47361 * 90.00505 * 1 2 3 29 29 H 1.09004 * 109.46877 * 210.00477 * 1 2 3 30 30 H 1.09006 * 109.47217 * 329.99933 * 1 2 3 31 31 H 1.08000 * 120.72034 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47071 * 270.02129 * 5 4 3 33 33 H 1.08992 * 109.46870 * 30.02050 * 5 4 3 34 34 H 1.09005 * 109.46874 * 150.01877 * 5 4 3 35 35 H 1.08992 * 109.47421 * 270.00139 * 9 8 7 36 36 H 1.09007 * 109.46720 * 30.00149 * 9 8 7 37 37 H 1.09003 * 109.47218 * 149.99930 * 9 8 7 38 38 H 1.08996 * 109.47853 * 179.97438 * 12 10 8 39 39 H 1.09002 * 109.47153 * 300.00008 * 12 10 8 40 40 H 1.08998 * 109.47533 * 59.99637 * 12 10 8 41 41 H 1.08997 * 109.47047 * 64.99775 * 13 10 8 42 42 H 1.08997 * 109.47298 * 185.00434 * 13 10 8 43 43 H 0.97000 * 120.00112 * 0.02562 * 14 13 10 44 44 H 1.09006 * 109.46618 * 300.00320 * 17 15 14 45 45 H 1.08993 * 109.47048 * 59.99673 * 17 15 14 46 46 H 0.97002 * 120.00247 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5937 1.1510 0.0005 5 6 4.3977 2.4257 0.0000 6 7 4.2015 -0.0239 0.0016 7 6 3.5013 -1.1486 0.0015 8 7 4.1698 -2.3605 0.0021 9 6 5.6345 -2.3892 0.0021 10 6 3.4126 -3.6147 0.0015 11 1 2.3450 -3.3946 0.0002 12 6 3.7655 -4.4241 1.2510 13 6 3.7674 -4.4242 -1.2474 14 7 3.5415 -3.6049 -2.4408 15 6 3.7888 -4.1136 -3.6641 16 8 4.1980 -5.2497 -3.7770 17 6 3.5570 -3.2707 -4.8916 18 16 3.9766 -4.2283 -6.3691 19 6 3.6215 -3.0363 -7.6173 20 1 3.2596 -2.0569 -7.3413 21 6 3.8078 -3.3559 -8.9551 22 7 4.2493 -4.5494 -9.2914 23 14 3.4320 -2.0920 -10.2783 24 1 4.2839 -0.8930 -10.0738 25 1 3.7114 -2.6763 -11.6146 26 1 2.0013 -1.7021 -10.1984 27 7 2.1764 -1.1408 -0.0049 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6868 2.1412 -0.0004 32 1 4.5916 2.7325 -1.0278 33 1 3.8388 3.2079 0.5134 34 1 5.3443 2.2584 0.5140 35 1 5.9978 -2.3968 -1.0255 36 1 6.0151 -1.5062 0.5156 37 1 5.9803 -3.2859 0.5163 38 1 3.2019 -5.3570 1.2509 39 1 4.8331 -4.6442 1.2519 40 1 3.5128 -3.8475 2.1408 41 1 4.8155 -4.7201 -1.2029 42 1 3.1402 -5.3144 -1.2938 43 1 3.2147 -2.6961 -2.3504 44 1 2.5089 -2.9746 -4.9364 45 1 4.1842 -2.3805 -4.8449 46 1 4.3792 -4.7728 -10.2264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113496131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:53 Heat of formation + Delta-G solvation = 16.627665 kcal Electronic energy + Delta-G solvation = -26868.155128 eV Core-core repulsion = 23112.437905 eV Total energy + Delta-G solvation = -3755.717223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27432 -39.32887 -37.85222 -34.96916 -34.40785 -32.89093 -32.41011 -31.22705 -29.61548 -29.31246 -27.73577 -26.92290 -25.91594 -25.33870 -23.25830 -21.76193 -20.41481 -20.17735 -17.93769 -17.68508 -17.66273 -16.33416 -16.07458 -15.67467 -15.64950 -15.28313 -14.78919 -14.70954 -14.29464 -14.14891 -13.89215 -13.72615 -13.47883 -13.33736 -13.11596 -12.88589 -12.83492 -12.75798 -12.60146 -12.42586 -12.40283 -12.20190 -12.05645 -11.69260 -11.25067 -11.02660 -11.02600 -10.95349 -10.75457 -10.43740 -10.19519 -9.80415 -9.36806 -9.23010 -9.04553 -8.82480 -8.21967 -8.07778 -6.47623 -6.19679 -3.90058 0.98156 1.03125 2.38561 3.07485 3.14744 3.24653 3.28574 3.33342 3.66333 3.76351 3.83922 4.14117 4.22412 4.36488 4.54581 4.82163 4.90391 4.98484 5.01404 5.06273 5.09797 5.15212 5.19826 5.23942 5.28431 5.28715 5.37039 5.41862 5.45205 5.52456 5.55853 5.64127 5.71530 5.72069 5.74462 5.78829 5.90390 5.92848 6.17078 6.21307 6.59015 6.71587 6.78480 7.26844 7.61019 7.75629 8.14720 8.36954 8.65768 9.25382 10.87736 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.002920 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.260121 B = 9586.770155 C =11017.286463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.221 3.779 3 C -0.295 4.295 4 C 0.220 3.780 5 C -0.106 4.106 6 N -0.572 5.572 7 C 0.572 3.428 8 N -0.579 5.579 9 C 0.099 3.901 10 C 0.138 3.862 11 H 0.114 0.886 12 C -0.158 4.158 13 C 0.112 3.888 14 N -0.732 5.732 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.152 4.152 18 S -0.058 6.058 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 N -0.576 5.576 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.396 0.604 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 11.682 25.684 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.074 3.926 3 C -0.321 4.321 4 C 0.072 3.928 5 C -0.163 4.163 6 N -0.296 5.296 7 C 0.216 3.784 8 N -0.295 5.295 9 C -0.044 4.044 10 C 0.034 3.966 11 H 0.132 0.868 12 C -0.217 4.217 13 C -0.014 4.014 14 N -0.386 5.386 15 C 0.318 3.682 16 O -0.394 6.394 17 C -0.303 4.303 18 S 0.169 5.831 19 C -0.685 4.685 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.300 5.300 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.158 0.842 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.230 0.770 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.678 8.584 25.347 26.895 hybrid contribution -1.230 3.356 -0.733 3.649 sum -3.907 11.941 24.614 27.635 Atomic orbital electron populations 1.20784 0.88031 1.03768 1.03809 1.21386 0.96923 0.87385 0.86943 1.22160 0.95413 1.00117 1.14417 1.21400 0.91368 0.92991 0.86997 1.20775 1.00037 0.91781 1.03734 1.67725 1.40770 0.97516 1.23592 1.19178 0.85010 0.86201 0.87964 1.46092 1.05846 1.01004 1.76562 1.21628 0.77663 1.02885 1.02180 1.21434 0.98341 0.82492 0.94309 0.86769 1.22084 1.02557 1.00252 0.96800 1.21685 1.02036 0.94028 0.83622 1.45889 1.69917 1.17494 1.05343 1.20272 0.76609 0.87541 0.83769 1.90693 1.43896 1.18542 1.86220 1.23513 1.04771 1.03231 0.98757 1.85347 1.86496 1.19217 0.92034 1.22835 1.51653 1.01121 0.92840 0.91071 1.24979 0.94633 0.96011 0.97877 1.70008 1.42629 1.19437 1.18254 0.86233 0.78932 0.80637 0.79756 1.19947 1.20767 1.19936 1.67678 1.07445 1.30861 1.23989 0.89514 0.90090 0.90215 0.84241 0.89587 0.90218 0.90144 0.92660 0.90244 0.91160 0.90702 0.91856 0.91900 0.91376 0.90372 0.77027 0.89455 0.89581 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.22 36.00 0.37 -0.35 16 2 C 0.22 2.21 6.82 -82.27 -0.56 1.65 16 3 C -0.30 -2.69 9.53 -39.31 -0.37 -3.06 16 4 C 0.22 2.23 6.82 -82.26 -0.56 1.67 16 5 C -0.11 -0.71 10.22 36.01 0.37 -0.35 16 6 N -0.57 -6.97 9.05 -10.15 -0.09 -7.06 16 7 C 0.57 7.05 7.93 -322.81 -2.56 4.49 16 8 N -0.58 -6.33 2.33 -176.28 -0.41 -6.74 16 9 C 0.10 0.98 9.60 59.85 0.57 1.56 16 10 C 0.14 1.38 2.82 -67.93 -0.19 1.19 16 11 H 0.11 1.23 6.76 -51.93 -0.35 0.88 16 12 C -0.16 -1.21 9.17 37.16 0.34 -0.86 16 13 C 0.11 1.39 4.97 -4.04 -0.02 1.37 16 14 N -0.73 -11.17 5.39 -60.29 -0.32 -11.49 16 15 C 0.53 10.63 7.85 -10.99 -0.09 10.55 16 16 O -0.52 -12.19 15.86 5.56 0.09 -12.10 16 17 C -0.15 -3.29 6.16 36.01 0.22 -3.07 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.69 9.50 30.94 0.29 -15.39 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 22 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 23 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 N -0.58 -6.81 8.78 -10.16 -0.09 -6.90 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.79 7.33 -51.92 -0.38 0.40 16 37 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 6.66 -51.93 -0.35 0.10 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.87 7.84 -51.93 -0.41 0.47 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.40 5.77 7.91 -40.82 -0.32 5.44 16 44 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 45 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 46 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -36.13 397.89 -10.79 -46.92 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.18 Total: 2.85 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.28 Total: 1.44 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.18 Total: -58.02 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.13 -10.79 -46.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113496131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.548 kcal (2) G-P(sol) polarization free energy of solvation -36.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds