Wall clock time and date at job start Tue Mar 31 2020 20:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38608 * 120.40064 * 2 1 4 4 C 1.38602 * 118.56196 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.40437 * 179.97438 * 4 3 2 6 6 N 1.32283 * 119.19484 * 359.97438 * 4 3 2 7 7 C 1.32494 * 120.73830 * 0.02562 * 6 4 3 8 8 N 1.38402 * 119.21202 * 179.97438 * 7 6 4 9 9 C 1.46498 * 120.00512 * 359.97438 * 8 7 6 10 10 C 1.46505 * 119.99815 * 180.02562 * 8 7 6 11 11 H 1.09002 * 109.47068 * 0.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 240.00008 * 10 8 7 13 13 C 1.53002 * 109.47411 * 120.00149 * 10 8 7 14 14 N 1.46503 * 109.46849 * 304.99988 * 13 10 8 15 15 C 1.34775 * 120.00100 * 179.97438 * 14 13 10 16 16 O 1.21281 * 119.99634 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00291 * 180.02562 * 15 14 13 18 18 S 1.80994 * 109.47094 * 180.02562 * 17 15 14 19 19 C 1.76209 * 99.99965 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99602 * 0.02562 * 19 18 17 21 21 C 1.38794 * 119.99888 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00417 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99803 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46783 * 59.99963 * 23 21 19 25 25 H 1.48500 * 109.47138 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47147 * 300.00578 * 23 21 19 27 27 N 1.32276 * 120.40376 * 180.24698 * 2 1 3 28 28 H 1.08999 * 109.47361 * 90.00505 * 1 2 3 29 29 H 1.09004 * 109.46877 * 210.00477 * 1 2 3 30 30 H 1.09006 * 109.47217 * 329.99933 * 1 2 3 31 31 H 1.08000 * 120.72034 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47071 * 270.02129 * 5 4 3 33 33 H 1.08992 * 109.46870 * 30.02050 * 5 4 3 34 34 H 1.09005 * 109.46874 * 150.01877 * 5 4 3 35 35 H 1.08992 * 109.47421 * 270.00139 * 9 8 7 36 36 H 1.09007 * 109.46720 * 30.00149 * 9 8 7 37 37 H 1.09003 * 109.47218 * 149.99930 * 9 8 7 38 38 H 1.08996 * 109.47853 * 179.97438 * 12 10 8 39 39 H 1.09002 * 109.47153 * 300.00008 * 12 10 8 40 40 H 1.08998 * 109.47533 * 59.99637 * 12 10 8 41 41 H 1.08997 * 109.47047 * 64.99775 * 13 10 8 42 42 H 1.08997 * 109.47298 * 185.00434 * 13 10 8 43 43 H 0.97000 * 120.00112 * 0.02562 * 14 13 10 44 44 H 1.09006 * 109.46618 * 300.00320 * 17 15 14 45 45 H 1.08993 * 109.47048 * 59.99673 * 17 15 14 46 46 H 0.97002 * 120.00247 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5937 1.1510 0.0005 5 6 4.3977 2.4257 0.0000 6 7 4.2015 -0.0239 0.0016 7 6 3.5013 -1.1486 0.0015 8 7 4.1698 -2.3605 0.0021 9 6 5.6345 -2.3892 0.0021 10 6 3.4126 -3.6147 0.0015 11 1 2.3450 -3.3946 0.0002 12 6 3.7655 -4.4241 1.2510 13 6 3.7674 -4.4242 -1.2474 14 7 3.5415 -3.6049 -2.4408 15 6 3.7888 -4.1136 -3.6641 16 8 4.1980 -5.2497 -3.7770 17 6 3.5570 -3.2707 -4.8916 18 16 3.9766 -4.2283 -6.3691 19 6 3.6215 -3.0363 -7.6173 20 1 3.2596 -2.0569 -7.3413 21 6 3.8078 -3.3559 -8.9551 22 7 4.2493 -4.5494 -9.2914 23 14 3.4320 -2.0920 -10.2783 24 1 4.2839 -0.8930 -10.0738 25 1 3.7114 -2.6763 -11.6146 26 1 2.0013 -1.7021 -10.1984 27 7 2.1764 -1.1408 -0.0049 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6868 2.1412 -0.0004 32 1 4.5916 2.7325 -1.0278 33 1 3.8388 3.2079 0.5134 34 1 5.3443 2.2584 0.5140 35 1 5.9978 -2.3968 -1.0255 36 1 6.0151 -1.5062 0.5156 37 1 5.9803 -3.2859 0.5163 38 1 3.2019 -5.3570 1.2509 39 1 4.8331 -4.6442 1.2519 40 1 3.5128 -3.8475 2.1408 41 1 4.8155 -4.7201 -1.2029 42 1 3.1402 -5.3144 -1.2938 43 1 3.2147 -2.6961 -2.3504 44 1 2.5089 -2.9746 -4.9364 45 1 4.1842 -2.3805 -4.8449 46 1 4.3792 -4.7728 -10.2264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113496131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:53 Heat of formation + Delta-G solvation = -5.202856 kcal Electronic energy + Delta-G solvation = -26869.101771 eV Core-core repulsion = 23112.437905 eV Total energy + Delta-G solvation = -3756.663865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04447 -40.75498 -38.87027 -35.74386 -35.52111 -34.62132 -33.85493 -32.10165 -30.91259 -30.21008 -28.32729 -27.78076 -27.67378 -26.79927 -24.07770 -22.45459 -21.80618 -21.19347 -19.84668 -18.61244 -18.45427 -17.87926 -17.41193 -16.91097 -16.70469 -16.53013 -16.28545 -15.95224 -15.68702 -15.14319 -14.90072 -14.64926 -14.52434 -14.33392 -14.26205 -14.01178 -13.86904 -13.49387 -13.37263 -13.31245 -13.21334 -13.07650 -13.03075 -12.94253 -12.89244 -12.74712 -12.62569 -12.03142 -11.78221 -11.72476 -11.19343 -11.16287 -11.07688 -10.89484 -10.35349 -10.20976 -10.01054 -8.87251 -8.71444 -8.37741 -6.16932 0.23838 0.27189 1.21500 1.41657 1.42396 1.51677 1.53208 1.61514 2.21737 2.24690 2.89109 2.96059 3.14781 3.26441 3.46494 3.61156 3.71908 3.87013 4.03834 4.15843 4.20426 4.26097 4.32066 4.38276 4.44899 4.54841 4.56554 4.62337 4.64339 4.74319 4.75422 4.79124 4.79633 4.90347 4.95977 5.00597 5.04648 5.21893 5.22315 5.34895 5.37306 5.54863 5.88113 6.01176 6.15873 6.32628 6.49183 7.02890 7.11430 7.35906 8.71386 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.002920 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.260121 B = 9586.770155 C =11017.286463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.204 3.796 3 C -0.292 4.292 4 C 0.201 3.799 5 C -0.101 4.101 6 N -0.594 5.594 7 C 0.552 3.448 8 N -0.583 5.583 9 C 0.104 3.896 10 C 0.149 3.851 11 H 0.109 0.891 12 C -0.150 4.150 13 C 0.110 3.890 14 N -0.710 5.710 15 C 0.535 3.465 16 O -0.559 6.559 17 C -0.129 4.129 18 S -0.138 6.138 19 C -0.553 4.553 20 H 0.079 0.921 21 C 0.016 3.984 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.262 1.262 27 N -0.592 5.592 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.402 0.598 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 14.049 26.697 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.057 3.943 3 C -0.317 4.317 4 C 0.055 3.945 5 C -0.159 4.159 6 N -0.319 5.319 7 C 0.197 3.803 8 N -0.300 5.300 9 C -0.039 4.039 10 C 0.045 3.955 11 H 0.127 0.873 12 C -0.209 4.209 13 C -0.014 4.014 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.437 6.437 17 C -0.281 4.281 18 S 0.089 5.911 19 C -0.700 4.700 20 H 0.097 0.903 21 C -0.189 4.189 22 N -0.546 5.546 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.186 1.186 27 N -0.317 5.317 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.187 0.813 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.237 0.763 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.877 10.994 26.413 28.871 hybrid contribution -0.893 2.682 -0.917 2.971 sum -4.770 13.675 25.497 29.323 Atomic orbital electron populations 1.20854 0.85890 1.04899 1.04271 1.22010 0.98431 0.87352 0.86501 1.22512 0.95152 1.01102 1.12971 1.22029 0.92473 0.93400 0.86638 1.20845 0.99863 0.90944 1.04204 1.67759 1.41480 0.98206 1.24477 1.19443 0.85502 0.86647 0.88723 1.46178 1.06055 1.00967 1.76766 1.21597 0.77375 1.03781 1.01163 1.21360 0.97942 0.82234 0.93967 0.87333 1.22034 1.03236 1.00335 0.95282 1.21915 1.02096 0.94193 0.83226 1.45702 1.67942 1.17807 1.04759 1.19967 0.76629 0.86746 0.84589 1.90681 1.46158 1.20039 1.86788 1.23340 1.05703 1.02586 0.96448 1.85470 1.87286 1.22297 0.96054 1.23164 1.52077 1.01320 0.93469 0.90303 1.26124 0.93926 0.98334 1.00505 1.70165 1.43606 1.21781 1.19022 0.85008 0.79318 0.77599 0.76094 1.18730 1.20017 1.18617 1.67725 1.07302 1.31945 1.24698 0.89197 0.90335 0.87743 0.81334 0.89253 0.87676 0.90496 0.94557 0.90448 0.89206 0.89380 0.91150 0.91703 0.91488 0.90097 0.76298 0.87946 0.88415 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.22 71.23 0.73 -0.43 16 2 C 0.20 3.75 6.82 42.58 0.29 4.04 16 3 C -0.29 -4.71 9.53 22.45 0.21 -4.50 16 4 C 0.20 3.81 6.82 42.58 0.29 4.10 16 5 C -0.10 -1.19 10.22 71.24 0.73 -0.46 16 6 N -0.59 -14.18 9.05 -186.04 -1.68 -15.86 16 7 C 0.55 13.31 7.93 261.49 2.07 15.38 16 8 N -0.58 -12.37 2.33 -711.61 -1.66 -14.03 16 9 C 0.10 2.01 9.60 127.77 1.23 3.23 16 10 C 0.15 2.83 2.82 44.99 0.13 2.95 16 11 H 0.11 2.24 6.76 -2.39 -0.02 2.22 16 12 C -0.15 -2.03 9.17 71.98 0.66 -1.37 16 13 C 0.11 2.66 4.97 86.38 0.43 3.09 16 14 N -0.71 -21.32 5.39 -463.06 -2.49 -23.81 16 15 C 0.54 21.49 7.85 87.66 0.69 22.17 16 16 O -0.56 -26.78 15.86 -3.03 -0.05 -26.83 16 17 C -0.13 -5.62 6.16 71.24 0.44 -5.19 16 18 S -0.14 -7.94 20.57 -56.49 -1.16 -9.11 16 19 C -0.55 -32.56 9.50 67.95 0.65 -31.91 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.02 0.94 5.49 84.86 0.47 1.40 16 22 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 23 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 27 N -0.59 -13.49 8.78 -186.04 -1.63 -15.12 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.64 8.10 -2.38 -0.02 0.62 16 31 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 0.66 8.09 -2.39 -0.02 0.64 16 34 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.52 7.33 -2.38 -0.02 1.50 16 37 H 0.09 1.34 6.43 -2.39 -0.02 1.32 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.86 6.66 -2.39 -0.02 0.85 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.68 7.84 -2.39 -0.02 1.66 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.40 11.42 7.91 -92.71 -0.73 10.69 16 44 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 45 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 46 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -80.11 397.89 2.89 -77.22 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.25 Total: 25.03 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 9.00 Total: 12.52 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -7.18 Total: -125.11 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.11 kcal Total: -80.11 2.89 -77.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113496131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.020 kcal (2) G-P(sol) polarization free energy of solvation -80.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds