Wall clock time and date at job start Tue Mar 31 2020 20:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38603 * 120.40030 * 2 1 4 4 C 1.38613 * 118.55834 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.40140 * 179.97438 * 4 3 2 6 6 N 1.32266 * 119.19604 * 359.97438 * 4 3 2 7 7 C 1.32499 * 120.74409 * 0.02562 * 6 4 3 8 8 N 1.38399 * 119.21926 * 179.97438 * 7 6 4 9 9 C 1.46504 * 119.99884 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47218 * 35.00106 * 9 8 7 11 11 C 1.53003 * 109.47035 * 275.00129 * 9 8 7 12 12 C 1.53006 * 109.47096 * 155.00054 * 9 8 7 13 13 N 1.46499 * 109.47075 * 305.00259 * 12 9 8 14 14 C 1.46499 * 120.00225 * 89.99694 * 13 12 9 15 15 C 1.34780 * 119.99546 * 270.00256 * 13 12 9 16 16 O 1.21279 * 120.00031 * 359.97438 * 15 13 12 17 17 C 1.50699 * 119.99563 * 180.02562 * 15 13 12 18 18 S 1.81004 * 109.46896 * 179.97438 * 17 15 13 19 19 C 1.76205 * 99.99950 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00169 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99783 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47446 * 89.99860 * 23 21 19 25 25 H 1.48504 * 109.46971 * 210.00124 * 23 21 19 26 26 H 1.48499 * 109.47141 * 329.99603 * 23 21 19 27 27 N 1.32272 * 120.40404 * 180.24645 * 2 1 3 28 28 H 1.08993 * 109.47214 * 90.00201 * 1 2 3 29 29 H 1.08999 * 109.47207 * 210.00361 * 1 2 3 30 30 H 1.09006 * 109.47133 * 330.00048 * 1 2 3 31 31 H 1.08000 * 120.72472 * 359.97438 * 3 2 1 32 32 H 1.09009 * 109.46978 * 270.02190 * 5 4 3 33 33 H 1.09008 * 109.47351 * 30.01553 * 5 4 3 34 34 H 1.08996 * 109.47275 * 150.02326 * 5 4 3 35 35 H 0.96996 * 120.00184 * 359.97438 * 8 7 6 36 36 H 1.09008 * 109.47004 * 299.99620 * 11 9 8 37 37 H 1.08992 * 109.47624 * 59.99846 * 11 9 8 38 38 H 1.08996 * 109.46853 * 180.02562 * 11 9 8 39 39 H 1.08993 * 109.46802 * 184.99948 * 12 9 8 40 40 H 1.09000 * 109.46667 * 65.00058 * 12 9 8 41 41 H 1.09002 * 109.47391 * 270.00005 * 14 13 12 42 42 H 1.09001 * 109.46813 * 150.00061 * 14 13 12 43 43 H 1.09004 * 109.47041 * 30.00189 * 14 13 12 44 44 H 1.09004 * 109.47017 * 299.99442 * 17 15 13 45 45 H 1.09002 * 109.47507 * 59.99434 * 17 15 13 46 46 H 0.97001 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5938 1.1509 0.0005 5 6 4.3978 2.4255 0.0000 6 7 4.2015 -0.0239 0.0016 7 6 3.5013 -1.1487 0.0015 8 7 4.1697 -2.3606 0.0021 9 6 3.4125 -3.6148 0.0027 10 1 2.5041 -3.4910 -0.5868 11 6 3.0413 -3.9857 1.4399 12 6 4.2681 -4.7274 -0.6065 13 7 4.7229 -4.3201 -1.9382 14 6 5.9887 -3.5987 -2.0912 15 6 3.9765 -4.6091 -3.0227 16 8 2.9288 -5.2067 -2.8960 17 6 4.4446 -4.1907 -4.3927 18 16 3.2352 -4.7199 -5.6311 19 6 4.0127 -4.1196 -7.0940 20 1 4.9580 -3.6015 -7.0294 21 6 3.4101 -4.3128 -8.3293 22 7 2.2582 -4.9447 -8.4081 23 14 4.2340 -3.6758 -9.8801 24 1 5.1297 -4.7242 -10.4312 25 1 3.1970 -3.3318 -10.8859 26 1 5.0300 -2.4648 -9.5560 27 7 2.1764 -1.1408 -0.0049 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6869 2.1412 -0.0004 32 1 4.5917 2.7323 -1.0279 33 1 3.8388 3.2080 0.5134 34 1 5.3443 2.2583 0.5139 35 1 5.1395 -2.3796 0.0021 36 1 3.9498 -4.1096 2.0294 37 1 2.4318 -3.1932 1.8738 38 1 2.4783 -4.9190 1.4403 39 1 3.6753 -5.6383 -0.6878 40 1 5.1322 -4.9119 0.0318 41 1 5.8059 -2.5261 -2.0255 42 1 6.4259 -3.8339 -3.0616 43 1 6.6761 -3.8992 -1.3004 44 1 4.5481 -3.1061 -4.4257 45 1 5.4080 -4.6542 -4.6048 46 1 1.8372 -5.0800 -9.2715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115631021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:43 Heat of formation + Delta-G solvation = 14.848711 kcal Electronic energy + Delta-G solvation = -26999.238379 eV Core-core repulsion = 23243.444014 eV Total energy + Delta-G solvation = -3755.794364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07497 -39.62538 -37.24266 -34.95302 -34.77867 -33.09990 -32.42204 -30.43770 -29.54183 -29.25623 -27.49551 -27.23585 -25.67068 -25.21209 -23.19832 -22.20317 -20.91201 -19.25940 -17.87533 -17.73139 -17.31483 -16.52828 -16.04503 -15.72003 -15.53843 -15.35119 -14.82116 -14.79676 -14.12401 -13.94911 -13.63461 -13.56420 -13.36338 -13.14076 -13.12021 -12.87477 -12.71561 -12.69506 -12.56894 -12.35027 -12.24855 -12.09713 -11.98152 -11.74593 -11.22553 -11.05793 -11.01650 -10.90672 -10.75454 -10.30158 -10.24845 -9.79929 -9.36640 -9.11439 -9.05888 -8.58569 -8.21793 -8.08152 -6.48919 -6.20847 -3.91218 1.12360 1.18426 2.74224 2.95263 3.07240 3.22513 3.26412 3.30694 3.61254 3.83242 4.00607 4.21056 4.30769 4.58824 4.70984 4.79368 5.03952 5.07628 5.12304 5.14237 5.15159 5.16607 5.20898 5.30978 5.36303 5.39359 5.43415 5.44205 5.55454 5.58522 5.63005 5.68066 5.72082 5.79569 5.84002 5.91137 5.93582 6.06668 6.14308 6.32495 6.61350 6.82753 7.10659 7.43029 7.50273 7.60269 8.35617 8.35901 8.55662 9.24374 10.86603 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.003017 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.823978 B = 9278.097091 C =10291.566883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.221 3.779 3 C -0.297 4.297 4 C 0.217 3.783 5 C -0.104 4.104 6 N -0.580 5.580 7 C 0.577 3.423 8 N -0.688 5.688 9 C 0.140 3.860 10 H 0.099 0.901 11 C -0.158 4.158 12 C 0.110 3.890 13 N -0.622 5.622 14 C 0.078 3.922 15 C 0.535 3.465 16 O -0.513 6.513 17 C -0.149 4.149 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.567 5.567 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.408 0.592 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 11.054 22.094 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 C -0.323 4.323 4 C 0.070 3.930 5 C -0.162 4.162 6 N -0.305 5.305 7 C 0.220 3.780 8 N -0.324 5.324 9 C 0.033 3.967 10 H 0.118 0.882 11 C -0.217 4.217 12 C -0.014 4.014 13 N -0.358 5.358 14 C -0.065 4.065 15 C 0.323 3.677 16 O -0.387 6.387 17 C -0.300 4.300 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 N -0.291 5.291 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.245 0.755 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.222 9.028 22.144 24.130 hybrid contribution 1.828 1.973 -1.197 2.944 sum 5.050 11.001 20.947 24.193 Atomic orbital electron populations 1.20782 0.88097 1.03649 1.03869 1.21416 0.97020 0.87431 0.86848 1.22139 0.95395 1.00073 1.14680 1.21331 0.91377 0.92897 0.87414 1.20759 0.99973 0.91858 1.03600 1.67674 1.41019 0.97662 1.24098 1.19223 0.85277 0.86190 0.87321 1.44205 1.08368 1.01092 1.78754 1.21464 0.96295 0.82027 0.96891 0.88247 1.22118 1.01553 1.02174 0.95831 1.21775 0.98962 0.97584 0.83071 1.47780 1.22843 1.59023 1.06105 1.21835 0.85037 0.96512 1.03143 1.20324 0.83691 0.78216 0.85503 1.90692 1.22511 1.39565 1.85960 1.23544 1.05928 1.04330 0.96166 1.85377 1.26637 1.75225 0.96146 1.22858 1.09810 1.43132 0.92522 0.91018 1.24983 0.94904 0.94911 0.98736 1.70018 1.15618 1.39013 1.25620 0.86178 0.78936 0.79108 0.81343 1.20244 1.20726 1.19714 1.67758 1.07531 1.30711 1.23131 0.89476 0.90072 0.90301 0.84318 0.89726 0.90267 0.90235 0.75462 0.92753 0.91965 0.91238 0.88069 0.90360 0.92735 0.90513 0.91367 0.89545 0.89301 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.22 36.01 0.37 -0.59 16 2 C 0.22 2.70 6.82 -82.27 -0.56 2.14 16 3 C -0.30 -3.20 9.53 -39.31 -0.37 -3.57 16 4 C 0.22 2.49 6.82 -82.27 -0.56 1.93 16 5 C -0.10 -0.79 10.22 36.00 0.37 -0.42 16 6 N -0.58 -7.83 10.39 -10.15 -0.11 -7.94 16 7 C 0.58 8.16 8.40 -322.81 -2.71 5.45 16 8 N -0.69 -8.29 4.50 -55.79 -0.25 -8.54 16 9 C 0.14 1.68 2.88 -67.92 -0.20 1.49 16 10 H 0.10 1.58 7.50 -51.93 -0.39 1.19 16 11 C -0.16 -1.54 9.50 37.16 0.35 -1.19 16 12 C 0.11 1.27 5.07 -4.04 -0.02 1.25 16 13 N -0.62 -8.74 2.73 -181.57 -0.50 -9.23 16 14 C 0.08 0.84 9.02 59.85 0.54 1.38 16 15 C 0.53 10.37 7.69 -10.98 -0.08 10.29 16 16 O -0.51 -11.78 15.44 5.56 0.09 -11.70 16 17 C -0.15 -3.14 4.71 36.00 0.17 -2.97 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 23 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 N -0.57 -8.22 9.14 -10.16 -0.09 -8.32 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.08 0.42 8.10 -51.92 -0.42 0.00 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.41 4.27 7.18 -40.82 -0.29 3.98 16 36 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.29 7.42 -51.93 -0.39 0.91 16 40 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 41 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 42 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 43 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 44 H 0.09 1.76 8.11 -51.91 -0.42 1.34 16 45 H 0.09 1.72 7.40 -51.91 -0.38 1.34 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -36.68 397.32 -11.07 -47.75 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.18 Total: 2.94 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.51 Total: 2.01 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.21 Total: -59.72 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.68 -11.07 -47.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115631021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.596 kcal (2) G-P(sol) polarization free energy of solvation -36.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds