Wall clock time and date at job start Tue Mar 31 2020 20:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38603 * 120.40030 * 2 1 4 4 C 1.38613 * 118.55834 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.40140 * 179.97438 * 4 3 2 6 6 N 1.32266 * 119.19604 * 359.97438 * 4 3 2 7 7 C 1.32499 * 120.74409 * 0.02562 * 6 4 3 8 8 N 1.38399 * 119.21926 * 179.97438 * 7 6 4 9 9 C 1.46504 * 119.99884 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47218 * 35.00106 * 9 8 7 11 11 C 1.53003 * 109.47035 * 275.00129 * 9 8 7 12 12 C 1.53006 * 109.47096 * 155.00054 * 9 8 7 13 13 N 1.46499 * 109.47075 * 305.00259 * 12 9 8 14 14 C 1.46499 * 120.00225 * 89.99694 * 13 12 9 15 15 C 1.34780 * 119.99546 * 270.00256 * 13 12 9 16 16 O 1.21279 * 120.00031 * 359.97438 * 15 13 12 17 17 C 1.50699 * 119.99563 * 180.02562 * 15 13 12 18 18 S 1.81004 * 109.46896 * 179.97438 * 17 15 13 19 19 C 1.76205 * 99.99950 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00169 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99783 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47446 * 89.99860 * 23 21 19 25 25 H 1.48504 * 109.46971 * 210.00124 * 23 21 19 26 26 H 1.48499 * 109.47141 * 329.99603 * 23 21 19 27 27 N 1.32272 * 120.40404 * 180.24645 * 2 1 3 28 28 H 1.08993 * 109.47214 * 90.00201 * 1 2 3 29 29 H 1.08999 * 109.47207 * 210.00361 * 1 2 3 30 30 H 1.09006 * 109.47133 * 330.00048 * 1 2 3 31 31 H 1.08000 * 120.72472 * 359.97438 * 3 2 1 32 32 H 1.09009 * 109.46978 * 270.02190 * 5 4 3 33 33 H 1.09008 * 109.47351 * 30.01553 * 5 4 3 34 34 H 1.08996 * 109.47275 * 150.02326 * 5 4 3 35 35 H 0.96996 * 120.00184 * 359.97438 * 8 7 6 36 36 H 1.09008 * 109.47004 * 299.99620 * 11 9 8 37 37 H 1.08992 * 109.47624 * 59.99846 * 11 9 8 38 38 H 1.08996 * 109.46853 * 180.02562 * 11 9 8 39 39 H 1.08993 * 109.46802 * 184.99948 * 12 9 8 40 40 H 1.09000 * 109.46667 * 65.00058 * 12 9 8 41 41 H 1.09002 * 109.47391 * 270.00005 * 14 13 12 42 42 H 1.09001 * 109.46813 * 150.00061 * 14 13 12 43 43 H 1.09004 * 109.47041 * 30.00189 * 14 13 12 44 44 H 1.09004 * 109.47017 * 299.99442 * 17 15 13 45 45 H 1.09002 * 109.47507 * 59.99434 * 17 15 13 46 46 H 0.97001 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5938 1.1509 0.0005 5 6 4.3978 2.4255 0.0000 6 7 4.2015 -0.0239 0.0016 7 6 3.5013 -1.1487 0.0015 8 7 4.1697 -2.3606 0.0021 9 6 3.4125 -3.6148 0.0027 10 1 2.5041 -3.4910 -0.5868 11 6 3.0413 -3.9857 1.4399 12 6 4.2681 -4.7274 -0.6065 13 7 4.7229 -4.3201 -1.9382 14 6 5.9887 -3.5987 -2.0912 15 6 3.9765 -4.6091 -3.0227 16 8 2.9288 -5.2067 -2.8960 17 6 4.4446 -4.1907 -4.3927 18 16 3.2352 -4.7199 -5.6311 19 6 4.0127 -4.1196 -7.0940 20 1 4.9580 -3.6015 -7.0294 21 6 3.4101 -4.3128 -8.3293 22 7 2.2582 -4.9447 -8.4081 23 14 4.2340 -3.6758 -9.8801 24 1 5.1297 -4.7242 -10.4312 25 1 3.1970 -3.3318 -10.8859 26 1 5.0300 -2.4648 -9.5560 27 7 2.1764 -1.1408 -0.0049 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6869 2.1412 -0.0004 32 1 4.5917 2.7323 -1.0279 33 1 3.8388 3.2080 0.5134 34 1 5.3443 2.2583 0.5139 35 1 5.1395 -2.3796 0.0021 36 1 3.9498 -4.1096 2.0294 37 1 2.4318 -3.1932 1.8738 38 1 2.4783 -4.9190 1.4403 39 1 3.6753 -5.6383 -0.6878 40 1 5.1322 -4.9119 0.0318 41 1 5.8059 -2.5261 -2.0255 42 1 6.4259 -3.8339 -3.0616 43 1 6.6761 -3.8992 -1.3004 44 1 4.5481 -3.1061 -4.4257 45 1 5.4080 -4.6542 -4.6048 46 1 1.8372 -5.0800 -9.2715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115631021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:42 Heat of formation + Delta-G solvation = -7.923728 kcal Electronic energy + Delta-G solvation = -27000.225866 eV Core-core repulsion = 23243.444014 eV Total energy + Delta-G solvation = -3756.781851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.98207 -40.97078 -38.35791 -36.15282 -35.63820 -34.61949 -34.03854 -31.50751 -30.77236 -30.17437 -28.25329 -28.21767 -27.73200 -26.49094 -24.14985 -23.08465 -21.87448 -20.69384 -19.59514 -18.80012 -18.41282 -17.89253 -17.27887 -16.94018 -16.90071 -16.40118 -16.32737 -16.03478 -15.79607 -14.97824 -14.73338 -14.58227 -14.47460 -14.29180 -14.09436 -13.96796 -13.79686 -13.62785 -13.47795 -13.30982 -13.23032 -13.18645 -12.97007 -12.92009 -12.87105 -12.83509 -12.60158 -12.15441 -11.80047 -11.74767 -11.22105 -11.17178 -11.13672 -10.91412 -10.32019 -10.05316 -9.77452 -9.00363 -8.71284 -8.37628 -6.16649 0.22731 0.28664 1.22037 1.40072 1.42444 1.52446 1.54548 1.85295 2.11508 2.24437 2.91358 2.96275 3.17861 3.22488 3.55187 3.65984 3.73141 3.81459 4.06745 4.13781 4.22163 4.27587 4.33019 4.39441 4.41013 4.52475 4.53704 4.59717 4.68338 4.70728 4.74370 4.77069 4.81500 4.86694 4.95141 4.97744 5.04249 5.19160 5.22193 5.37701 5.50624 5.53075 5.90591 6.16005 6.19677 6.24698 6.52890 7.03128 7.10003 7.43703 8.71776 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.003017 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.823978 B = 9278.097091 C =10291.566883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.196 3.804 3 C -0.294 4.294 4 C 0.201 3.799 5 C -0.099 4.099 6 N -0.595 5.595 7 C 0.556 3.444 8 N -0.682 5.682 9 C 0.149 3.851 10 H 0.053 0.947 11 C -0.146 4.146 12 C 0.110 3.890 13 N -0.606 5.606 14 C 0.071 3.929 15 C 0.531 3.469 16 O -0.560 6.560 17 C -0.123 4.123 18 S -0.149 6.149 19 C -0.548 4.548 20 H 0.080 0.920 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.260 1.260 27 N -0.599 5.599 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.171 0.829 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.416 0.584 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 12.953 23.041 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.050 3.950 3 C -0.320 4.320 4 C 0.054 3.946 5 C -0.156 4.156 6 N -0.320 5.320 7 C 0.198 3.802 8 N -0.320 5.320 9 C 0.042 3.958 10 H 0.071 0.929 11 C -0.205 4.205 12 C -0.013 4.013 13 N -0.339 5.339 14 C -0.071 4.071 15 C 0.318 3.682 16 O -0.438 6.438 17 C -0.274 4.274 18 S 0.078 5.922 19 C -0.696 4.696 20 H 0.098 0.902 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.184 1.184 27 N -0.324 5.324 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.189 0.811 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.717 10.959 23.137 26.232 hybrid contribution 1.084 1.457 -1.356 2.267 sum 6.801 12.416 21.781 25.978 Atomic orbital electron populations 1.20844 0.86329 1.04832 1.03949 1.22032 0.98471 0.87655 0.86859 1.22510 0.95407 1.00803 1.13238 1.22082 0.92360 0.93580 0.86566 1.20851 0.99877 0.90560 1.04328 1.67750 1.41300 0.98133 1.24821 1.19533 0.85569 0.87004 0.88081 1.44123 1.08596 1.00506 1.78799 1.21249 0.94650 0.82325 0.97558 0.92877 1.22010 1.02446 1.01762 0.94328 1.21996 1.00607 0.96644 0.82036 1.47745 1.22980 1.57570 1.05635 1.22125 0.83922 0.96145 1.04922 1.20089 0.83634 0.78297 0.86158 1.90675 1.24569 1.42045 1.86556 1.23351 1.04273 1.04532 0.95226 1.85541 1.30955 1.76376 0.99339 1.23178 1.10137 1.43382 0.92912 0.90186 1.26136 0.95444 0.94796 1.02645 1.70181 1.17407 1.40328 1.26742 0.84949 0.77936 0.78911 0.76153 1.19028 1.20108 1.18355 1.67787 1.08113 1.32166 1.24345 0.89786 0.90810 0.87207 0.81150 0.89100 0.87638 0.90092 0.74518 0.90321 0.93565 0.90596 0.89395 0.85587 0.92808 0.90626 0.86929 0.88878 0.87266 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 10.22 71.24 0.73 -1.09 16 2 C 0.20 4.81 6.82 42.58 0.29 5.11 16 3 C -0.29 -5.94 9.53 22.45 0.21 -5.73 16 4 C 0.20 4.34 6.82 42.58 0.29 4.63 16 5 C -0.10 -1.26 10.22 71.24 0.73 -0.53 16 6 N -0.59 -15.69 10.39 -186.04 -1.93 -17.62 16 7 C 0.56 15.78 8.40 261.49 2.20 17.98 16 8 N -0.68 -16.00 4.50 -330.42 -1.49 -17.48 16 9 C 0.15 3.57 2.88 44.99 0.13 3.70 16 10 H 0.05 1.80 7.50 -2.39 -0.02 1.78 16 11 C -0.15 -2.76 9.50 71.98 0.68 -2.08 16 12 C 0.11 2.38 5.07 86.38 0.44 2.82 16 13 N -0.61 -16.32 2.73 -846.75 -2.31 -18.63 16 14 C 0.07 1.33 9.02 127.77 1.15 2.48 16 15 C 0.53 20.90 7.69 87.66 0.67 21.58 16 16 O -0.56 -26.94 15.44 -3.02 -0.05 -26.99 16 17 C -0.12 -5.22 4.71 71.24 0.34 -4.89 16 18 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 19 C -0.55 -32.21 9.50 67.95 0.65 -31.57 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.85 5.49 84.86 0.47 1.32 16 22 N -0.91 -56.81 13.22 21.65 0.29 -56.52 16 23 Si 1.00 44.29 29.55 68.60 2.03 46.32 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 N -0.60 -17.92 9.14 -186.04 -1.70 -19.62 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 1.20 8.10 -2.38 -0.02 1.18 16 31 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.11 0.77 8.10 -2.38 -0.02 0.75 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.42 7.93 7.18 -92.71 -0.67 7.26 16 36 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 2.22 7.42 -2.39 -0.02 2.20 16 40 H 0.13 1.58 7.89 -2.39 -0.02 1.56 16 41 H 0.05 1.07 7.39 -2.39 -0.02 1.05 16 42 H 0.08 1.48 6.44 -2.39 -0.02 1.46 16 43 H 0.11 1.18 7.89 -2.38 -0.02 1.16 16 44 H 0.09 3.80 8.11 -2.39 -0.02 3.79 16 45 H 0.11 4.16 7.40 -2.39 -0.02 4.14 16 46 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -85.25 397.32 2.97 -82.28 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.32 Total: 24.30 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 8.97 Total: 13.74 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -7.14 Total: -129.88 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -85.25 2.97 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115631021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.361 kcal (2) G-P(sol) polarization free energy of solvation -85.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds