Wall clock time and date at job start Tue Mar 31 2020 20:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35320 * 126.12378 * 2 1 4 4 C 1.39866 * 107.91770 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.90002 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47337 * 95.00084 * 5 4 3 7 7 C 1.46904 * 111.00011 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.88521 * 328.87714 * 7 6 5 9 9 C 1.55160 * 111.00249 * 204.99832 * 7 6 5 10 10 C 1.54316 * 102.94268 * 206.42592 * 9 7 6 11 11 N 1.47026 * 107.27365 * 22.19228 * 10 9 7 12 12 C 1.34771 * 125.65100 * 180.79395 * 11 10 9 13 13 O 1.21280 * 119.99952 * 180.02562 * 12 11 10 14 14 C 1.50705 * 119.99988 * 0.02691 * 12 11 10 15 15 S 1.80993 * 109.46992 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00132 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99797 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00331 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00111 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46975 * 60.00437 * 20 18 16 22 22 H 1.48494 * 109.46964 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47208 * 299.99927 * 20 18 16 24 24 C 1.47425 * 108.70074 * 1.05989 * 11 10 9 25 25 N 1.30848 * 108.20542 * 0.26423 * 4 3 2 26 26 N 1.34943 * 126.12782 * 180.02562 * 2 1 3 27 27 C 1.46508 * 126.03818 * 359.96512 * 26 2 1 28 28 H 1.09002 * 109.47000 * 89.97909 * 1 2 3 29 29 H 1.08999 * 109.46978 * 209.97395 * 1 2 3 30 30 H 1.08998 * 109.47309 * 329.97705 * 1 2 3 31 31 H 1.07995 * 126.03878 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47184 * 335.00238 * 5 4 3 33 33 H 1.09002 * 109.47333 * 215.00189 * 5 4 3 34 34 H 1.00899 * 110.99606 * 303.95382 * 6 5 4 35 35 H 1.08997 * 110.71793 * 88.05922 * 9 7 6 36 36 H 1.09003 * 110.87062 * 324.86265 * 9 7 6 37 37 H 1.09004 * 109.88447 * 262.78098 * 10 9 7 38 38 H 1.09000 * 109.88516 * 141.60887 * 10 9 7 39 39 H 1.08993 * 109.46871 * 299.99760 * 14 12 11 40 40 H 1.09000 * 109.46865 * 59.99842 * 14 12 11 41 41 H 0.97001 * 120.00554 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.36478 * 94.71036 * 24 11 10 43 43 H 1.08998 * 110.36859 * 217.03414 * 24 11 10 44 44 H 1.08994 * 109.46826 * 89.99919 * 27 26 2 45 45 H 1.08994 * 109.46956 * 210.00453 * 27 26 2 46 46 H 1.09005 * 109.46538 * 330.00160 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 -0.0006 5 6 4.8542 1.5396 -0.0013 6 7 5.3224 1.7291 1.3781 7 6 6.5137 2.5878 1.4164 8 1 7.1102 2.4654 0.5123 9 6 7.3619 2.3059 2.6847 10 6 8.0922 3.6453 2.9169 11 7 7.3100 4.6917 2.2423 12 6 7.6240 6.0015 2.1979 13 8 6.9019 6.7786 1.6100 14 6 8.8724 6.5006 2.8789 15 16 9.0154 8.2891 2.6409 16 6 10.5153 8.5950 3.5136 17 1 11.0404 7.7788 3.9873 18 6 11.0224 9.8847 3.5914 19 7 10.3826 10.8794 3.0137 20 14 12.6121 10.2089 4.5172 21 1 13.7131 9.4272 3.8992 22 1 12.9357 11.6567 4.4531 23 1 12.4508 9.8006 5.9359 24 6 6.1221 4.0716 1.6277 25 7 3.6334 -0.6524 -0.0067 26 7 2.3026 -1.0899 -0.0005 27 6 1.8539 -2.4846 -0.0004 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5142 31 1 1.9740 2.1211 0.0004 32 1 4.6023 2.5070 -0.4356 33 1 5.6418 1.0706 -0.5911 34 1 4.5885 2.1032 1.9608 35 1 8.0766 1.5039 2.5002 36 1 6.7225 2.0630 3.5334 37 1 9.0947 3.5997 2.4915 38 1 8.1496 3.8560 3.9848 39 1 8.8183 6.2788 3.9446 40 1 9.7433 6.0063 2.4485 41 1 10.7367 11.7808 3.0684 42 1 5.2657 4.1462 2.2979 43 1 5.8989 4.5449 0.6715 44 1 1.7422 -2.8303 -1.0280 45 1 2.5901 -3.1030 0.5131 46 1 0.8957 -2.5579 0.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181106831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:04 Heat of formation + Delta-G solvation = 47.284613 kcal Electronic energy + Delta-G solvation = -25530.338626 eV Core-core repulsion = 21775.950788 eV Total energy + Delta-G solvation = -3754.387838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59325 -39.85947 -37.71764 -35.59103 -33.59752 -32.41249 -32.37303 -31.02142 -29.59050 -28.54920 -27.40562 -26.78257 -25.46853 -24.69269 -23.09597 -21.11166 -20.70370 -19.70892 -19.29021 -17.70417 -16.93988 -16.61771 -16.58750 -15.99411 -15.85020 -14.81700 -14.79982 -14.73542 -14.58416 -14.02592 -13.94647 -13.82282 -13.76284 -13.66552 -13.28197 -12.98084 -12.87245 -12.74438 -12.63976 -12.52517 -12.48268 -12.10680 -11.80594 -11.69514 -11.52046 -11.02483 -11.02353 -10.93573 -10.80405 -10.74991 -9.81327 -9.50479 -9.40740 -9.04179 -8.85522 -8.72847 -8.45622 -8.22009 -6.48536 -6.19689 -3.90471 1.50947 2.13262 2.37889 2.92315 3.08106 3.25070 3.27213 3.30646 3.61589 3.94665 4.10098 4.20945 4.22419 4.38069 4.50680 4.57972 4.61616 4.69863 4.82987 4.93606 4.98383 5.00475 5.08938 5.13033 5.15425 5.18757 5.28351 5.33177 5.39373 5.46724 5.53294 5.62798 5.68019 5.69955 5.82280 5.86795 5.88726 6.00793 6.16742 6.30832 6.40209 6.66333 6.68783 7.00957 7.44439 7.60978 7.68949 8.36871 8.57348 9.25339 10.87699 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035992 B = 0.001645 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.764007 B =17012.141061 C =17568.284283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.079 3.921 3 C -0.268 4.268 4 C 0.079 3.921 5 C 0.138 3.862 6 N -0.667 5.667 7 C 0.076 3.924 8 H 0.096 0.904 9 C -0.117 4.117 10 C 0.100 3.900 11 N -0.624 5.624 12 C 0.548 3.452 13 O -0.517 6.517 14 C -0.146 4.146 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.082 3.918 25 N -0.276 5.276 26 N -0.375 5.375 27 C 0.101 3.899 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.347 0.653 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 -27.945 -4.806 33.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.298 4.298 4 C -0.088 4.088 5 C 0.007 3.993 6 N -0.298 5.298 7 C -0.035 4.035 8 H 0.114 0.886 9 C -0.155 4.155 10 C -0.023 4.023 11 N -0.362 5.362 12 C 0.337 3.663 13 O -0.391 6.391 14 C -0.297 4.297 15 S 0.165 5.835 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.044 4.044 25 N -0.098 5.098 26 N -0.158 5.158 27 C -0.041 4.041 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.164 0.836 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.000 -28.310 -5.728 34.033 hybrid contribution 0.909 0.779 1.160 1.667 sum -17.091 -27.531 -4.568 32.725 Atomic orbital electron populations 1.20456 0.87352 1.03874 1.03336 1.21083 0.94661 0.87335 1.01669 1.21176 0.91767 0.99124 1.17705 1.22052 0.95053 0.91600 1.00081 1.20271 0.92400 0.95874 0.90713 1.60503 1.08553 1.51200 1.09560 1.22803 0.92195 0.88972 0.99547 0.88582 1.22612 0.98918 0.96095 0.97911 1.22061 0.95629 0.86764 0.97884 1.48391 1.25202 1.06793 1.55779 1.20052 0.86775 0.79656 0.79836 1.90704 1.51823 1.53823 1.42785 1.23503 0.96913 1.06537 1.02734 1.85386 1.32436 0.93950 1.71686 1.22825 1.09583 0.96543 1.39445 0.90962 1.24986 0.97990 0.95014 0.95536 1.70007 1.38621 1.00207 1.41466 0.86223 0.81988 0.77378 0.79907 1.19930 1.20811 1.19940 1.22887 0.89090 0.93507 0.98885 1.77392 0.95846 1.12491 1.24080 1.48489 1.03962 1.05971 1.57410 1.21830 1.00989 0.77994 1.03283 0.90183 0.91216 0.89512 0.83582 0.92557 0.89323 0.83398 0.89680 0.90118 0.91144 0.91165 0.89276 0.89254 0.92137 0.91724 0.90514 0.90819 0.89192 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.12 36.01 0.36 0.00 16 2 C 0.08 0.62 6.93 -82.26 -0.57 0.05 16 3 C -0.27 -2.41 10.65 -40.01 -0.43 -2.83 16 4 C 0.08 0.81 6.73 -82.40 -0.55 0.25 16 5 C 0.14 1.22 6.11 -4.98 -0.03 1.19 16 6 N -0.67 -5.92 6.40 -105.72 -0.68 -6.60 16 7 C 0.08 0.70 3.38 -65.56 -0.22 0.48 16 8 H 0.10 0.89 7.83 -51.93 -0.41 0.48 16 9 C -0.12 -1.02 6.65 -24.90 -0.17 -1.19 16 10 C 0.10 1.11 6.49 -3.07 -0.02 1.09 16 11 N -0.62 -9.20 3.33 -170.52 -0.57 -9.77 16 12 C 0.55 10.86 7.87 -10.99 -0.09 10.77 16 13 O -0.52 -12.26 16.12 5.56 0.09 -12.17 16 14 C -0.15 -3.07 5.35 36.01 0.19 -2.88 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 20 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.08 0.98 6.50 -2.53 -0.02 0.96 16 25 N -0.28 -3.15 12.58 33.67 0.42 -2.73 16 26 N -0.38 -3.28 4.01 -63.88 -0.26 -3.54 16 27 C 0.10 0.45 11.27 59.85 0.67 1.12 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.18 7.08 -51.93 -0.37 -0.19 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.35 2.97 8.18 -39.29 -0.32 2.64 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.06 0.75 7.75 -51.93 -0.40 0.34 16 43 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.17 7.05 -51.93 -0.37 -0.19 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -37.42 397.88 -9.47 -46.89 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.32 Total: -1.01 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.66 Total: -4.07 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.34 Total: -48.26 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.42 -9.47 -46.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.180 kcal (2) G-P(sol) polarization free energy of solvation -37.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds